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Title: Structural basis for the modulation of plant cytosolic triosephosphate isomerase activity by mimicry of redox‐based modifications

Authors:
 [1];  [1];  [2];  [1];  [1];  [1];  [2];  [3]; ORCiD logo [1]
  1. Laboratorio Nacional de Genómica para la Biodiversidad Centro de Investigación y de Estudios Avanzados del IPN Apartado Postal 629, Irapuato Guanajuato México CP 36821 México
  2. Departamento de Bioquímica Facultad de Medicina Universidad Nacional Autónoma de México Circuito Exterior s/n Ciudad Universitaria Apartado Postal 70‐243 Mexico City 04510 México
  3. Departamento de Bioquímica y Biología Estructural Instituto de Fisiología Celular Universidad Nacional Autónoma de México Circuito Exterior s/n Ciudad Universitaria Apartado Postal 70‐243 México City 04510 México
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1526080
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
The Plant Journal
Additional Journal Information:
Journal Name: The Plant Journal; Journal ID: ISSN 0960-7412
Publisher:
Wiley-Blackwell
Country of Publication:
United Kingdom
Language:
English

Citation Formats

Castro‐Torres, Eduardo, Jiménez‐Sandoval, Pedro, Romero‐Romero, Sergio, Fuentes‐Pascacio, Alma, López‐Castillo, Laura M., Díaz‐Quezada, Corina, Fernández‐Velasco, D. Alejandro, Torres‐Larios, Alfredo, and Brieba, Luis G. Structural basis for the modulation of plant cytosolic triosephosphate isomerase activity by mimicry of redox‐based modifications. United Kingdom: N. p., 2019. Web. doi:10.1111/tpj.14375.
Castro‐Torres, Eduardo, Jiménez‐Sandoval, Pedro, Romero‐Romero, Sergio, Fuentes‐Pascacio, Alma, López‐Castillo, Laura M., Díaz‐Quezada, Corina, Fernández‐Velasco, D. Alejandro, Torres‐Larios, Alfredo, & Brieba, Luis G. Structural basis for the modulation of plant cytosolic triosephosphate isomerase activity by mimicry of redox‐based modifications. United Kingdom. doi:10.1111/tpj.14375.
Castro‐Torres, Eduardo, Jiménez‐Sandoval, Pedro, Romero‐Romero, Sergio, Fuentes‐Pascacio, Alma, López‐Castillo, Laura M., Díaz‐Quezada, Corina, Fernández‐Velasco, D. Alejandro, Torres‐Larios, Alfredo, and Brieba, Luis G. Thu . "Structural basis for the modulation of plant cytosolic triosephosphate isomerase activity by mimicry of redox‐based modifications". United Kingdom. doi:10.1111/tpj.14375.
@article{osti_1526080,
title = {Structural basis for the modulation of plant cytosolic triosephosphate isomerase activity by mimicry of redox‐based modifications},
author = {Castro‐Torres, Eduardo and Jiménez‐Sandoval, Pedro and Romero‐Romero, Sergio and Fuentes‐Pascacio, Alma and López‐Castillo, Laura M. and Díaz‐Quezada, Corina and Fernández‐Velasco, D. Alejandro and Torres‐Larios, Alfredo and Brieba, Luis G.},
abstractNote = {},
doi = {10.1111/tpj.14375},
journal = {The Plant Journal},
number = ,
volume = ,
place = {United Kingdom},
year = {2019},
month = {6}
}

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Works referenced in this record:

Regulation of plant cytosolic glyceraldehyde 3-phosphate dehydrogenase isoforms by thiol modifications
journal, June 2008


Structure of yeast triosephosphate isomerase at 1.9-.ANG. resolution
journal, July 1990

  • Lolis, Elias; Alber, Tom; Davenport, Robert C.
  • Biochemistry, Vol. 29, Issue 28
  • DOI: 10.1021/bi00480a009

Presenting your structures: the CCP 4 mg molecular-graphics software
journal, March 2011

  • McNicholas, S.; Potterton, E.; Wilson, K. S.
  • Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4
  • DOI: 10.1107/S0907444911007281

Structure and Inactivation of Triosephosphate Isomerase from Entamoeba histolytica
journal, September 2002

  • Rodrı́guez-Romero, Adela; Hernández-Santoyo, Alejandra; del Pozo Yauner, Luis
  • Journal of Molecular Biology, Vol. 322, Issue 4
  • DOI: 10.1016/S0022-2836(02)00809-4

Three hTIM Mutants that Provide New Insights on why TIM is a Dimer
journal, March 1996

  • Mainfroid, Véronique; Terpstra, Peter; Beauregard, Marc
  • Journal of Molecular Biology, Vol. 257, Issue 2
  • DOI: 10.1006/jmbi.1996.0174

Cytosolic Triosephosphate Isomerase from Arabidopsis thaliana Is Reversibly Modified by Glutathione on Cysteines 127 and 218
journal, December 2016

  • Dumont, Sébastien; Bykova, Natalia V.; Pelletier, Guillaume
  • Frontiers in Plant Science, Vol. 7
  • DOI: 10.3389/fpls.2016.01942

Plant cytoplasmic GAPDH: redox post-translational modifications and moonlighting properties
journal, January 2013


The sulfinic acid switch in proteins
journal, January 2004

  • Jacob, Claus; Holme, Andrea L.; Fry, Fiona H.
  • Org. Biomol. Chem., Vol. 2, Issue 14
  • DOI: 10.1039/B406180B

Comparison of the refined crystal structures of liganded and unliganded chicken, yeast and trypanosomal triosephosphate isomerase
journal, April 1992


Impact of an N-terminal Polyhistidine Tag on Protein Thermal Stability
journal, January 2018


Phylogeny of Calvin cycle enzymes supports Plantae monophyly
journal, October 2007

  • Reyes-Prieto, Adrian; Bhattacharya, Debashish
  • Molecular Phylogenetics and Evolution, Vol. 45, Issue 1
  • DOI: 10.1016/j.ympev.2007.02.026

Substrate-Induced Dimerization of Engineered Monomeric Variants of Triosephosphate Isomerase from Trichomonas vaginalis
journal, November 2015


Structure and conformational stability of the triosephosphate isomerase from Zea mays. Comparison with the chemical unfolding pathways of other eukaryotic TIMs
journal, November 2018

  • Romero-Romero, Sergio; Becerril-Sesín, Luis A.; Costas, Miguel
  • Archives of Biochemistry and Biophysics, Vol. 658
  • DOI: 10.1016/j.abb.2018.09.022

Crystallography and Site-directed Mutagenesis of Yeast Triosephosphate Isomerase: What Can We Learn about Catalysis from a "Simple" Enzyme?
journal, January 1987

  • Alber, T. C.; Davenport, R. C.; Giammona, D. A.
  • Cold Spring Harbor Symposia on Quantitative Biology, Vol. 52, Issue 0
  • DOI: 10.1101/SQB.1987.052.01.069

First Proteomic Study of S-Glutathionylation in Cyanobacteria
journal, September 2014

  • Chardonnet, Solenne; Sakr, Samer; Cassier-Chauvat, Corinne
  • Journal of Proteome Research, Vol. 14, Issue 1
  • DOI: 10.1021/pr500625a

Shotgun redox proteomics identifies specifically modified cysteines in key metabolic enzymes under oxidative stress in Saccharomyces cerevisiae
journal, May 2009


Triosephosphate isomerase catalysis is diffusion controlled
journal, February 1988

  • Blacklow, Stephen C.; Raines, Ronald T.; Lim, Wendell A.
  • Biochemistry, Vol. 27, Issue 4
  • DOI: 10.1021/bi00404a013

Strong hydrophobic nature of cysteine residues in proteins
journal, September 1999


Conformational stability of dimeric proteins: Quantitative studies by equilibrium denaturation
journal, December 1994


The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis
journal, September 2017

  • Flügel, Franziska; Timm, Stefan; Arrivault, Stéphanie
  • The Plant Cell, Vol. 29, Issue 10
  • DOI: 10.1105/tpc.17.00256

Dimer destabilization in superoxide dismutase may result in disease-causing properties: Structures of motor neuron disease mutants
journal, March 2004

  • Hough, M. A.; Grossmann, J. G.; Antonyuk, S. V.
  • Proceedings of the National Academy of Sciences, Vol. 101, Issue 16
  • DOI: 10.1073/pnas.0305143101

Stress-Induced Protein S -Glutathionylation in Arabidopsis
journal, July 2005

  • Dixon, David P.; Skipsey, Mark; Grundy, Nicholas M.
  • Plant Physiology, Vol. 138, Issue 4
  • DOI: 10.1104/pp.104.058917

A Cytosolic Triosephosphate Isomerase Is a Key Component in XA3/XA26-Mediated Resistance
journal, August 2018

  • Liu, Yanyan; Cao, Yinglong; Zhang, Qinglu
  • Plant Physiology, Vol. 178, Issue 2
  • DOI: 10.1104/pp.18.00348

Cysteine Reactivity Distinguishes Redox Sensing by the Heat-Inducible and Constitutive Forms of Heat Shock Protein 70
journal, November 2012


Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization–Not Catalytic Inactivity–of the Mutant Enzymes
journal, December 2006


Detrimental effect of the 6 His C-terminal tag on YedY enzymatic activity and influence of the TAT signal sequence on YedY synthesis
journal, January 2013

  • Sabaty, Monique; Grosse, Sandrine; Adryanczyk, Geraldine
  • BMC Biochemistry, Vol. 14, Issue 1
  • DOI: 10.1186/1471-2091-14-28

Identification and Quantification of S-Nitrosylation by Cysteine Reactive Tandem Mass Tag Switch Assay
journal, November 2011

  • Murray, Christopher I.; Uhrigshardt, Helge; O'Meally, Robert N.
  • Molecular & Cellular Proteomics, Vol. 11, Issue 2
  • DOI: 10.1074/mcp.M111.013441

Cellular and biochemical characterization of two closely related triosephosphate isomerases from Trichomonas vaginalis
journal, August 2012

  • Figueroa-Angulo, Elisa E.; Estrella-HernÁNdez, Priscila; Salgado-Lugo, Holjes
  • Parasitology, Vol. 139, Issue 13
  • DOI: 10.1017/S003118201200114X

Strategies to maintain redox homeostasis during photosynthesis under changing conditions
journal, April 2005

  • Scheibe, Renate; Backhausen, Jan E.; Emmerlich, Vera
  • Journal of Experimental Botany, Vol. 56, Issue 416
  • DOI: 10.1093/jxb/eri181

The TIM-barrel fold: a versatile framework for efficient enzymes
journal, March 2001


iMOSFLM : a new graphical interface for diffraction-image processing with MOSFLM
journal, March 2011

  • Battye, T. Geoff G.; Kontogiannis, Luke; Johnson, Owen
  • Acta Crystallographica Section D Biological Crystallography, Vol. 67, Issue 4
  • DOI: 10.1107/S0907444910048675

Redox Regulation in Photosynthetic Organisms: Focus on Glutathionylation
journal, March 2012

  • Zaffagnini, Mirko; Bedhomme, Mariette; Marchand, Christophe H.
  • Antioxidants & Redox Signaling, Vol. 16, Issue 6
  • DOI: 10.1089/ars.2011.4255

Unfolding of Triosephosphate Isomerase from Trypanosoma brucei: Identification of Intermediates and Insight into the Denaturation Pathway Using Tryptophan Mutants
journal, March 2002

  • Chánez-Cárdenas, María Elena; Fernández-Velasco, D. Alejandro; Vázquez-Contreras, Edgar
  • Archives of Biochemistry and Biophysics, Vol. 399, Issue 2
  • DOI: 10.1006/abbi.2001.2749

Sulfhydryl reagent susceptibility in proteins with high sequence similarity. Triosephosphate isomerase from Trypanosoma brucei, Trypanosoma cruzi and Leishmania mexicana
journal, May 1998


Triosephosphate isomerase: a highly evolved biocatalyst
journal, August 2010

  • Wierenga, R. K.; Kapetaniou, E. G.; Venkatesan, R.
  • Cellular and Molecular Life Sciences, Vol. 67, Issue 23
  • DOI: 10.1007/s00018-010-0473-9

Redox regulation of the Calvin–Benson cycle: something old, something new
journal, January 2013

  • Michelet, Laure; Zaffagnini, Mirko; Morisse, Samuel
  • Frontiers in Plant Science, Vol. 4
  • DOI: 10.3389/fpls.2013.00470

A guide to the effects of a large portion of the residues of triosephosphate isomerase on catalysis, stability, druggability, and human disease: A TIM Guide
journal, April 2017

  • Olivares-Illana, Vanesa; Riveros-Rosas, Hector; Cabrera, Nallely
  • Proteins: Structure, Function, and Bioinformatics, Vol. 85, Issue 7
  • DOI: 10.1002/prot.25299

Segmental motion in catalysis: investigation of a hydrogen bond critical for loop closure in the reaction of triosephosphate isomerase
journal, September 1992

  • Sampson, Nicole S.; Knowles, Jeremy R.
  • Biochemistry, Vol. 31, Issue 36
  • DOI: 10.1021/bi00151a015

Segmental movement: definition of the structural requirements for loop closure in catalysis by triosephosphate isomerase
journal, September 1992

  • Sampson, Nicole S.; Knowles, Jeremy R.
  • Biochemistry, Vol. 31, Issue 36
  • DOI: 10.1021/bi00151a014

Conserved Cysteine 126 in Triosephosphate Isomerase Is Required Not for Enzymatic Activity but for Proper Folding and Stability
journal, March 2004

  • González-Mondragón, Edith; Zubillaga, Rafael A.; Saavedra, Emma
  • Biochemistry, Vol. 43, Issue 11
  • DOI: 10.1021/bi036077s

A competent catalytic active site is necessary for substrate induced dimer assembly in triosephosphate isomerase
journal, November 2017

  • Jimenez-Sandoval, Pedro; Vique-Sanchez, Jose Luis; Hidalgo, Marisol López
  • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1865, Issue 11
  • DOI: 10.1016/j.bbapap.2017.07.014

Reversibility and two state behaviour in the thermal unfolding of oligomeric TIM barrel proteins
journal, January 2015

  • Romero-Romero, Sergio; Costas, Miguel; Rodríguez-Romero, Adela
  • Physical Chemistry Chemical Physics, Vol. 17, Issue 32
  • DOI: 10.1039/C5CP01599E

Effects of the polyhistidine tag on kinetics and other properties of trehalose synthase from Deinococcus geothermalis.
journal, June 2013

  • Panek, Anna; Pietrow, Olga; Filipkowski, Paweł
  • Acta Biochimica Polonica, Vol. 60, Issue 2
  • DOI: 10.18388/abp.2013_1966

Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic Bacteria Synechocystis
journal, November 2018

  • Castro-Torres, Eduardo; Jimenez-Sandoval, Pedro; Fernández-de Gortari, Eli
  • Frontiers in Molecular Biosciences, Vol. 5
  • DOI: 10.3389/fmolb.2018.00103

Triosephosphate Isomerase by Consensus Design: Dramatic Differences in Physical Properties and Activity of Related Variants
journal, October 2011

  • Sullivan, Brandon J.; Durani, Venuka; Magliery, Thomas J.
  • Journal of Molecular Biology, Vol. 413, Issue 1
  • DOI: 10.1016/j.jmb.2011.08.001

Design, creation, and characterization of a stable, monomeric triosephosphate isomerase.
journal, February 1994

  • Borchert, T. V.; Abagyan, R.; Jaenicke, R.
  • Proceedings of the National Academy of Sciences, Vol. 91, Issue 4
  • DOI: 10.1073/pnas.91.4.1515

Refined 1.83 Å structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 m-ammonium sulphate
journal, August 1991


High-Resolution Crystal Structure and Redox Properties of Chloroplastic Triosephosphate Isomerase from Chlamydomonas reinhardtii
journal, January 2014

  • Zaffagnini, Mirko; Michelet, Laure; Sciabolini, Chiara
  • Molecular Plant, Vol. 7, Issue 1
  • DOI: 10.1093/mp/sst139

Oxidation mimicking substitution of conservative cysteine in recoverin suppresses its membrane association
journal, February 2011

  • Permyakov, Sergei E.; Zernii, Evgeni Yu; Knyazeva, Ekaterina L.
  • Amino Acids, Vol. 42, Issue 4
  • DOI: 10.1007/s00726-011-0843-0

The emerging roles of protein glutathionylation in chloroplasts
journal, April 2012


Analyzing the effect of decreasing cytosolic triosephosphate isomerase on Solanum tuberosum hairy root cells using a kinetic-metabolic model
journal, October 2012

  • Valancin, Alexandre; Srinivasan, Balasubrahmanyan; Rivoal, Jean
  • Biotechnology and Bioengineering, Vol. 110, Issue 3
  • DOI: 10.1002/bit.24747

Structural and Functional Perturbation of Giardia lamblia Triosephosphate Isomerase by Modification of a Non-Catalytic, Non-Conserved Region
journal, July 2013

  • Hernández-Alcántara, Gloria; Torres-Larios, Alfredo; Enríquez-Flores, Sergio
  • PLoS ONE, Vol. 8, Issue 7
  • DOI: 10.1371/journal.pone.0069031

Different strategies to recover the activity of monomeric triosephosphate isomerase by directed evolution
journal, March 2001

  • Saab-Rincón, Gloria; Juárez, Victor Rivelino; Osuna, Joel
  • Protein Engineering, Design and Selection, Vol. 14, Issue 3
  • DOI: 10.1093/protein/14.3.149

Susceptibility to proteolysis of triosephosphate isomerase from two pathogenic parasites: Characterization of an enzyme with an intact and a nicked monomer: Proteolysis of Triosephosphate Isomerase
journal, June 2002

  • Reyes-Vivas, Horacio; Martínez-Martínez, Eduardo; Mendoza-Hernández, Guillermo
  • Proteins: Structure, Function, and Bioinformatics, Vol. 48, Issue 3
  • DOI: 10.1002/prot.10179

S-Glutathionylation of Cysteine 99 in the APE1 Protein Impairs Abasic Endonuclease Activity
journal, December 2011

  • Kim, Yun-Jeong; Kim, Daemyung; Illuzzi, Jennifer L.
  • Journal of Molecular Biology, Vol. 414, Issue 3
  • DOI: 10.1016/j.jmb.2011.10.023

Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress
journal, January 2007

  • Ralser, Markus; Wamelink, Mirjam M.; Kowald, Axel
  • Journal of Biology, Vol. 6, Issue 4
  • DOI: 10.1186/jbiol61

Different catalytic properties of two highly homologous triosephosphate isomerase monomers
journal, May 2009

  • Zárate-Pérez, Francisco; Chánez-Cárdenas, María Elena; Arreola, Rodrigo
  • Biochemical and Biophysical Research Communications, Vol. 382, Issue 3
  • DOI: 10.1016/j.bbrc.2009.03.085

Thermal Unfolding of Triosephosphate Isomerase from Entamoeba histolytica : Dimer Dissociation Leads to Extensive Unfolding
journal, November 2008

  • Tellez, Luis A.; Blancas-Mejia, Luis M.; Carrillo-Nava, Ernesto
  • Biochemistry, Vol. 47, Issue 44
  • DOI: 10.1021/bi801360k