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Title: Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification

Abstract

Abstract Human hair contains minimal intact nuclear DNA for human identification in forensic and archaeological applications. In contrast, proteins offer a pathway to exploit hair evidence for human identification owing to their persistence, abundance, and derivation from DNA. Individualizing single nucleotide polymorphisms (SNPs) are often conserved as single amino acid polymorphisms in genetically variant peptides (GVPs). Detection of GVP markers in the hair proteome via high-resolution tandem mass spectrometry permits inference of SNPs with known statistical probabilities. To adopt this approach for forensic investigations, hair proteomic variation and its effects on GVP identification must first be characterized. This research aimed to assess variation in single-inch head, arm, and pubic hair, and discover body location-invariant GVP markers to distinguish individuals. Comparison of protein profiles revealed greater body location-specific variation in keratin-associated proteins and intracellular proteins, allowing body location differentiation. However, robust GVP markers derive primarily from keratins that do not exhibit body location-specific differential expression, supporting GVP identification independence from hair proteomic variation at the various body locations. Further, pairwise comparisons of GVP profiles with 8 SNPs demonstrated greatest interindividual variation and high intraindividual consistency, enabling similar differentiative potential of individuals using single hairs irrespective of body location origin.

Authors:
; ; ORCiD logo; ORCiD logo;
Publication Date:
Research Org.:
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Org.:
USDOE; LLNL Laboratory Directed Research and Development (LDRD) Program
OSTI Identifier:
1619638
Alternate Identifier(s):
OSTI ID: 1515356
Report Number(s):
LLNL-JRNL-757511
Journal ID: ISSN 2045-2322; 7641; PII: 44007
Grant/Contract Number:  
AC52-07NA27344
Resource Type:
Published Article
Journal Name:
Scientific Reports
Additional Journal Information:
Journal Name: Scientific Reports Journal Volume: 9 Journal Issue: 1; Journal ID: ISSN 2045-2322
Publisher:
Nature Publishing Group
Country of Publication:
United Kingdom
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; genetic markers; proteomics

Citation Formats

Chu, Fanny, Mason, Katelyn E., Anex, Deon S., Jones, A. Daniel, and Hart, Bradley R. Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification. United Kingdom: N. p., 2019. Web. doi:10.1038/s41598-019-44007-7.
Chu, Fanny, Mason, Katelyn E., Anex, Deon S., Jones, A. Daniel, & Hart, Bradley R. Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification. United Kingdom. https://doi.org/10.1038/s41598-019-44007-7
Chu, Fanny, Mason, Katelyn E., Anex, Deon S., Jones, A. Daniel, and Hart, Bradley R. Tue . "Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification". United Kingdom. https://doi.org/10.1038/s41598-019-44007-7.
@article{osti_1619638,
title = {Hair Proteome Variation at Different Body Locations on Genetically Variant Peptide Detection for Protein-Based Human Identification},
author = {Chu, Fanny and Mason, Katelyn E. and Anex, Deon S. and Jones, A. Daniel and Hart, Bradley R.},
abstractNote = {Abstract Human hair contains minimal intact nuclear DNA for human identification in forensic and archaeological applications. In contrast, proteins offer a pathway to exploit hair evidence for human identification owing to their persistence, abundance, and derivation from DNA. Individualizing single nucleotide polymorphisms (SNPs) are often conserved as single amino acid polymorphisms in genetically variant peptides (GVPs). Detection of GVP markers in the hair proteome via high-resolution tandem mass spectrometry permits inference of SNPs with known statistical probabilities. To adopt this approach for forensic investigations, hair proteomic variation and its effects on GVP identification must first be characterized. This research aimed to assess variation in single-inch head, arm, and pubic hair, and discover body location-invariant GVP markers to distinguish individuals. Comparison of protein profiles revealed greater body location-specific variation in keratin-associated proteins and intracellular proteins, allowing body location differentiation. However, robust GVP markers derive primarily from keratins that do not exhibit body location-specific differential expression, supporting GVP identification independence from hair proteomic variation at the various body locations. Further, pairwise comparisons of GVP profiles with 8 SNPs demonstrated greatest interindividual variation and high intraindividual consistency, enabling similar differentiative potential of individuals using single hairs irrespective of body location origin.},
doi = {10.1038/s41598-019-44007-7},
journal = {Scientific Reports},
number = 1,
volume = 9,
place = {United Kingdom},
year = {Tue May 21 00:00:00 EDT 2019},
month = {Tue May 21 00:00:00 EDT 2019}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1038/s41598-019-44007-7

Citation Metrics:
Cited by: 16 works
Citation information provided by
Web of Science

Figures / Tables:

Figure 1 Figure 1: Comparison of numbers of identified (a) proteins, (b) unique peptides, (c) amino acids, and missense SNPs inferred from (d) major and (e) minor GVPs at different body locations. Black lines represent statistically significant comparisons and significance levels are represented as: p ≤ 0.05 (*), p ≤ 0.01 (**),more » and p ≤ 0.001 (***). Pubic hair samples yield statistically greater numbers of proteins, peptides, amino acids, and inferred SNPs (two-way ANOVA and Tukey HSD; n = 36).« less

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