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Title: Observed variation in soil properties can drive large variation in modelled forest functioning and composition during tropical forest secondary succession

Abstract

Censuses of tropical forest plots reveal large variation in biomass and plant composition. This paper evaluates whether such variation can emerge solely from realistic variation in a set of commonly measured soil chemical and physical properties. Controlled simulations were performed using a mechanistic model that includes forest dynamics, microbe-mediated biogeochemistry, and competition for nitrogen and phosphorus. Observations from 18 forest inventory plots in Guanacaste, Costa Rica were used to determine realistic variation in soil properties. In simulations of secondary succession, the across-plot range in plant biomass reached 30% of the mean and was attributable primarily to nutrient limitation and secondarily to soil texture differences that affected water availability. The contributions of different plant functional types to total biomass varied widely across plots and depended on soil nutrient status. In Central America, soil-induced variation in plant biomass increased with mean annual precipitation because of changes in nutrient limitation. In Central America, large variation in plant biomass and ecosystem composition arises mechanistically from realistic variation in soil properties. Finally, the degree of biomass and compositional variation is climate sensitive. In general, model predictions can be improved through better representation of soil nutrient processes, including their spatial variation.

Authors:
ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [3]; ORCiD logo [3]; ORCiD logo [1]; ORCiD logo [4]; ORCiD logo [5]; ORCiD logo [6]
  1. Univ. of Notre Dame, IN (United States)
  2. Univ. of Oklahoma, Norman, OK (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  3. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  4. Utah State Univ., Logan, UT (United States)
  5. Univ. of Notre Dame, IN (United States); Harvard Univ., Cambridge, MA (United States)
  6. Univ. of Minnesota, St Paul, MN (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC); National Science Foundation (NSF)
OSTI Identifier:
1581362
Alternate Identifier(s):
OSTI ID: 1511778
Grant/Contract Number:  
AC02-05CH11231; SC0014363; DEB-1053237; AC05-00OR22725
Resource Type:
Accepted Manuscript
Journal Name:
New Phytologist
Additional Journal Information:
Journal Volume: 223; Journal Issue: 4; Journal ID: ISSN 0028-646X
Publisher:
Wiley
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; ecosystem composition; ED2-MEND-N-COM; forest biomass; soil nutrients; soil texture; spatial variation; terrestrial ecosystem modelling; tropical forests

Citation Formats

Medvigy, David, Wang, Gangsheng, Zhu, Qing, Riley, William J., Trierweiler, Annette M., Waring, Bonnie G., Xu, Xiangtao, and Powers, Jennifer S. Observed variation in soil properties can drive large variation in modelled forest functioning and composition during tropical forest secondary succession. United States: N. p., 2019. Web. doi:10.1111/nph.15848.
Medvigy, David, Wang, Gangsheng, Zhu, Qing, Riley, William J., Trierweiler, Annette M., Waring, Bonnie G., Xu, Xiangtao, & Powers, Jennifer S. Observed variation in soil properties can drive large variation in modelled forest functioning and composition during tropical forest secondary succession. United States. https://doi.org/10.1111/nph.15848
Medvigy, David, Wang, Gangsheng, Zhu, Qing, Riley, William J., Trierweiler, Annette M., Waring, Bonnie G., Xu, Xiangtao, and Powers, Jennifer S. Sat . "Observed variation in soil properties can drive large variation in modelled forest functioning and composition during tropical forest secondary succession". United States. https://doi.org/10.1111/nph.15848. https://www.osti.gov/servlets/purl/1581362.
@article{osti_1581362,
title = {Observed variation in soil properties can drive large variation in modelled forest functioning and composition during tropical forest secondary succession},
author = {Medvigy, David and Wang, Gangsheng and Zhu, Qing and Riley, William J. and Trierweiler, Annette M. and Waring, Bonnie G. and Xu, Xiangtao and Powers, Jennifer S.},
abstractNote = {Censuses of tropical forest plots reveal large variation in biomass and plant composition. This paper evaluates whether such variation can emerge solely from realistic variation in a set of commonly measured soil chemical and physical properties. Controlled simulations were performed using a mechanistic model that includes forest dynamics, microbe-mediated biogeochemistry, and competition for nitrogen and phosphorus. Observations from 18 forest inventory plots in Guanacaste, Costa Rica were used to determine realistic variation in soil properties. In simulations of secondary succession, the across-plot range in plant biomass reached 30% of the mean and was attributable primarily to nutrient limitation and secondarily to soil texture differences that affected water availability. The contributions of different plant functional types to total biomass varied widely across plots and depended on soil nutrient status. In Central America, soil-induced variation in plant biomass increased with mean annual precipitation because of changes in nutrient limitation. In Central America, large variation in plant biomass and ecosystem composition arises mechanistically from realistic variation in soil properties. Finally, the degree of biomass and compositional variation is climate sensitive. In general, model predictions can be improved through better representation of soil nutrient processes, including their spatial variation.},
doi = {10.1111/nph.15848},
journal = {New Phytologist},
number = 4,
volume = 223,
place = {United States},
year = {Sat Apr 13 00:00:00 EDT 2019},
month = {Sat Apr 13 00:00:00 EDT 2019}
}

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Works referenced in this record:

Shift from ecosystem P to N limitation at precipitation gradient in tropical dry forests at Yucatan, Mexico
journal, September 2016


Diversity and structure of regenerating tropical dry forests in Costa Rica: Geographic patterns and environmental drivers
journal, September 2009

  • Powers, Jennifer S.; Becknell, Justin M.; Irving, Jennifer
  • Forest Ecology and Management, Vol. 258, Issue 6
  • DOI: 10.1016/j.foreco.2008.10.036

Deforestation and forest restoration in Guanacaste, Costa Rica: Putting conservation policies in context
journal, September 2009

  • Calvo-Alvarado, J.; McLennan, B.; Sánchez-Azofeifa, A.
  • Forest Ecology and Management, Vol. 258, Issue 6
  • DOI: 10.1016/j.foreco.2008.10.035

Ecosystem heterogeneity and diversity mitigate Amazon forest resilience to frequent extreme droughts
journal, May 2018

  • Longo, Marcos; Knox, Ryan G.; Levine, Naomi M.
  • New Phytologist, Vol. 219, Issue 3
  • DOI: 10.1111/nph.15185

Evaluation of ecosystem dynamics, plant geography and terrestrial carbon cycling in the LPJ dynamic global vegetation model
journal, February 2003


Nutrient limitation of soil microbial processes in tropical forests
journal, November 2017

  • Camenzind, Tessa; Hättenschwiler, Stephan; Treseder, Kathleen K.
  • Ecological Monographs, Vol. 88, Issue 1
  • DOI: 10.1002/ecm.1279

The regional variation of aboveground live biomass in old-growth Amazonian forests
journal, July 2006


Soil parent material—A major driver of plant nutrient limitations in terrestrial ecosystems
journal, April 2017

  • Augusto, Laurent; Achat, David L.; Jonard, Mathieu
  • Global Change Biology, Vol. 23, Issue 9
  • DOI: 10.1111/gcb.13691

Determination of World Plant Formations From Simple Climatic Data
journal, April 1947


Diversity in plant hydraulic traits explains seasonal and inter-annual variations of vegetation dynamics in seasonally dry tropical forests
journal, May 2016

  • Xu, Xiangtao; Medvigy, David; Powers, Jennifer S.
  • New Phytologist, Vol. 212, Issue 1
  • DOI: 10.1111/nph.14009

Influence of carbon-nitrogen cycle coupling on land model response to CO 2 fertilization and climate variability : INFLUENCE OF CARBON-NITROGEN COUPLING
journal, December 2007

  • Thornton, Peter E.; Lamarque, Jean-François; Rosenbloom, Nan A.
  • Global Biogeochemical Cycles, Vol. 21, Issue 4
  • DOI: 10.1029/2006GB002868

Potential Biomass Accumulation in Amazonian Regrowth Forests
journal, November 2001


Evolved Strategies in Nitrogen Acquisition by Plants
journal, November 1981

  • Gutschick, Vincent P.
  • The American Naturalist, Vol. 118, Issue 5
  • DOI: 10.1086/283858

Biomass resilience of Neotropical secondary forests
journal, February 2016

  • Poorter, Lourens; Bongers, Frans; Aide, T. Mitchell
  • Nature, Vol. 530, Issue 7589
  • DOI: 10.1038/nature16512

Jensen’s inequality predicts effects of environmental variation
journal, September 1999


Distribution Patterns of Tropical Dry Forest Trees Along a Mesoscale Water Availability Gradient: Tree Distribution Along Water Availability Gradient
journal, October 2010


Incorporating phosphorus cycling into global modeling efforts: a worthwhile, tractable endeavor
journal, June 2015

  • Reed, Sasha C.; Yang, Xiaojuan; Thornton, Peter E.
  • New Phytologist, Vol. 208, Issue 2
  • DOI: 10.1111/nph.13521

Topography shapes the structure, composition and function of tropical forest landscapes
journal, April 2018

  • Jucker, Tommaso; Bongalov, Boris; Burslem, David F. R. P.
  • Ecology Letters, Vol. 21, Issue 7
  • DOI: 10.1111/ele.12964

Environmental correlates of tree biomass, basal area, wood specific gravity and stem density gradients in Borneo's tropical forests: Forest carbon and structure gradients
journal, October 2009


Geological Substrates Shape Tree Species and Trait Distributions in African Moist Forests
journal, August 2012


Basin-wide variations in Amazon forest structure and function are mediated by both soils and climate
journal, January 2012


Pervasive phosphorus limitation of tree species but not communities in tropical forests
journal, March 2018

  • Turner, Benjamin L.; Brenes-Arguedas, Tania; Condit, Richard
  • Nature, Vol. 555, Issue 7696
  • DOI: 10.1038/nature25789

Resilience of seed production to a severe El Niño-induced drought across functional groups and dispersal types
journal, August 2018

  • O'Brien, Michael J.; Peréz-Aviles, Daniel; Powers, Jennifer S.
  • Global Change Biology, Vol. 24, Issue 11
  • DOI: 10.1111/gcb.14416

Leaf and stem economics spectra drive diversity of functional plant traits in a dynamic global vegetation model
journal, April 2015

  • Sakschewski, Boris; von Bloh, Werner; Boit, Alice
  • Global Change Biology, Vol. 21, Issue 7
  • DOI: 10.1111/gcb.12870

Terrestrial Gross Carbon Dioxide Uptake: Global Distribution and Covariation with Climate
journal, July 2010


Quantification of geodiversity and its loss
journal, January 2010


Geodiversity: developing the paradigm
journal, January 2008


Edaphic variation and the mesoscale distribution of tree species in a neotropical rain forest
journal, January 1998


Plant–microbe interactions along a gradient of soil fertility in tropical dry forest
journal, June 2016

  • Waring, Bonnie G.; Gei, Maria G.; Rosenthal, Lisa
  • Journal of Tropical Ecology, Vol. 32, Issue 4
  • DOI: 10.1017/S0266467416000286

A global overview of the conservation status of tropical dry forests
journal, March 2006


Factors of Soil Formation
journal, January 1941


Key role of symbiotic dinitrogen fixation in tropical forest secondary succession
journal, September 2013

  • Batterman, Sarah A.; Hedin, Lars O.; van Breugel, Michiel
  • Nature, Vol. 502, Issue 7470
  • DOI: 10.1038/nature12525

Development of a 50-Year High-Resolution Global Dataset of Meteorological Forcings for Land Surface Modeling
journal, July 2006

  • Sheffield, Justin; Goteti, Gopi; Wood, Eric F.
  • Journal of Climate, Vol. 19, Issue 13
  • DOI: 10.1175/JCLI3790.1

The biogeochemical heterogeneity of tropical forests
journal, August 2008


Soil nutrients influence spatial distributions of tropical tree species
journal, January 2007

  • John, Robert; Dalling, James W.; Harms, Kyle E.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 3
  • DOI: 10.1073/pnas.0604666104

Beyond climate control on species range: The importance of soil data to predict distribution of Amazonian plant species
journal, November 2017

  • Figueiredo, Fernando O. G.; Zuquim, Gabriela; Tuomisto, Hanna
  • Journal of Biogeography, Vol. 45, Issue 1
  • DOI: 10.1111/jbi.13104

Soil moisture drives microbial controls on carbon decomposition in two subtropical forests
journal, March 2019


Quantification of modelling uncertainties in a large ensemble of climate change simulations
journal, August 2004

  • Murphy, James M.; Sexton, David M. H.; Barnett, David N.
  • Nature, Vol. 430, Issue 7001
  • DOI: 10.1038/nature02771

Legume abundance along successional and rainfall gradients in Neotropical forests
journal, May 2018

  • Gei, Maga; Rozendaal, Danaë M. A.; Poorter, Lourens
  • Nature Ecology & Evolution, Vol. 2, Issue 7
  • DOI: 10.1038/s41559-018-0559-6

Nutrient limitation reduces land carbon uptake in simulations with a model of combined carbon, nitrogen and phosphorus cycling
journal, January 2012


Microbial dormancy improves development and experimental validation of ecosystem model
journal, July 2014

  • Wang, Gangsheng; Jagadamma, Sindhu; Mayes, Melanie A.
  • The ISME Journal, Vol. 9, Issue 1
  • DOI: 10.1038/ismej.2014.120

A new theory of plant-microbe nutrient competition resolves inconsistencies between observations and model predictions
journal, March 2017

  • Zhu, Qing; Riley, William J.; Tang, Jinyun
  • Ecological Applications, Vol. 27, Issue 3
  • DOI: 10.1002/eap.1490

Relationship between soils and Amazon forest biomass: a landscape-scale study
journal, June 1999

  • Laurance, William F.; Fearnside, Philip M.; Laurance, Susan G.
  • Forest Ecology and Management, Vol. 118, Issue 1-3
  • DOI: 10.1016/S0378-1127(98)00494-0

Aboveground biomass in mature and secondary seasonally dry tropical forests: A literature review and global synthesis
journal, July 2012


Microbial community-level regulation explains soil carbon responses to long-term litter manipulations
journal, October 2017


Recent trends and drivers of regional sources and sinks of carbon dioxide
journal, January 2015


Edaphic Factors are a More Important Control on Surface Fine Roots than Stand Age in Secondary Tropical Dry Forests
journal, May 2012


Next-generation dynamic global vegetation models: learning from community ecology
journal, March 2013

  • Scheiter, Simon; Langan, Liam; Higgins, Steven I.
  • New Phytologist, Vol. 198, Issue 3
  • DOI: 10.1111/nph.12210

Detection of large above-ground biomass variability in lowland forest ecosystems by airborne LiDAR
journal, January 2013


Variation in aboveground tree live biomass in a central Amazonian Forest: Effects of soil and topography
journal, October 2006

  • de Castilho, Carolina V.; Magnusson, William E.; de Araújo, R. Nazaré O.
  • Forest Ecology and Management, Vol. 234, Issue 1-3
  • DOI: 10.1016/j.foreco.2006.06.024

Nitrogen cycling and feedbacks in a global dynamic land model: MODELING THE LAND NITROGEN CYCLE
journal, January 2010

  • Gerber, Stefan; Hedin, Lars O.; Oppenheimer, Michael
  • Global Biogeochemical Cycles, Vol. 24, Issue 1
  • DOI: 10.1029/2008GB003336

Ecosystem model spin-up: Estimating steady state conditions in a coupled terrestrial carbon and nitrogen cycle model
journal, November 2005


Nitrogen and phosphorous limitation reduces the effects of land use change on land carbon uptake or emission
journal, January 2015


Nitrogen, phosphorus, and cation use efficiency in stands of regenerating tropical dry forest
journal, March 2015


Taking off the training wheels: the properties of a dynamic vegetation model without climate envelopes, CLM4.5(ED)
journal, January 2015

  • Fisher, R. A.; Muszala, S.; Verteinstein, M.
  • Geoscientific Model Development, Vol. 8, Issue 11
  • DOI: 10.5194/gmd-8-3593-2015

Weaker soil carbon–climate feedbacks resulting from microbial and abiotic interactions
journal, November 2014


Modelling the impact of future changes in climate, CO2 concentration and land use on natural ecosystems and the terrestrial carbon sink
journal, April 2004


Accounting for landscape heterogeneity improves spatial predictions of tree vulnerability to drought
journal, July 2018

  • Schwantes, Amanda M.; Parolari, Anthony J.; Swenson, Jennifer J.
  • New Phytologist, Vol. 220, Issue 1
  • DOI: 10.1111/nph.15274

Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses
journal, January 2013

  • Wang, Gangsheng; Post, Wilfred M.; Mayes, Melanie A.
  • Ecological Applications, Vol. 23, Issue 1
  • DOI: 10.1890/12-0681.1

Pervasive and strong effects of plants on soil chemistry: a meta-analysis of individual plant ‘Zinke’ effects
journal, August 2015

  • Waring, Bonnie G.; Álvarez-Cansino, Leonor; Barry, Kathryn E.
  • Proceedings of the Royal Society B: Biological Sciences, Vol. 282, Issue 1812
  • DOI: 10.1098/rspb.2015.1001

Stand age and soils as drivers of plant functional traits and aboveground biomass in secondary tropical dry forest
journal, June 2014

  • Becknell, Justin M.; Powers, Jennifer S.
  • Canadian Journal of Forest Research, Vol. 44, Issue 6
  • DOI: 10.1139/cjfr-2013-0331

Explicitly representing soil microbial processes in Earth system models: Soil microbes in earth system models
journal, October 2015

  • Wieder, William R.; Allison, Steven D.; Davidson, Eric A.
  • Global Biogeochemical Cycles, Vol. 29, Issue 10
  • DOI: 10.1002/2015GB005188

Soil-carbon response to warming dependent on microbial physiology
journal, April 2010

  • Allison, Steven D.; Wallenstein, Matthew D.; Bradford, Mark A.
  • Nature Geoscience, Vol. 3, Issue 5
  • DOI: 10.1038/ngeo846

Ecosystem heterogeneity determines the ecological resilience of the Amazon to climate change
journal, December 2015

  • Levine, Naomi M.; Zhang, Ke; Longo, Marcos
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 3
  • DOI: 10.1073/pnas.1511344112

Plant community responses to stand‐level nutrient fertilization in a secondary tropical dry forest
journal, April 2019

  • Waring, Bonnie G.; Pérez‐Aviles, Daniel; Murray, Jessica G.
  • Ecology
  • DOI: 10.1002/ecy.2691

Potassium, phosphorus, or nitrogen limit root allocation, tree growth, or litter production in a lowland tropical forest
journal, August 2011

  • Wright, S. Joseph; Yavitt, Joseph B.; Wurzburger, Nina
  • Ecology, Vol. 92, Issue 8
  • DOI: 10.1890/10-1558.1

Species distributions in response to individual soil nutrients and seasonal drought across a community of tropical trees
journal, February 2013

  • Condit, R.; Engelbrecht, B. M. J.; Pino, D.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 13
  • DOI: 10.1073/pnas.1218042110

Mechanistic scaling of ecosystem function and dynamics in space and time: Ecosystem Demography model version 2
journal, January 2009

  • Medvigy, D.; Wofsy, S. C.; Munger, J. W.
  • Journal of Geophysical Research, Vol. 114, Issue G1
  • DOI: 10.1029/2008JG000812

The role of local-scale heterogeneities in terrestrial ecosystem modeling
journal, February 2015

  • Pappas, Christoforos; Fatichi, Simone; Rimkus, Stefan
  • Journal of Geophysical Research: Biogeosciences, Vol. 120, Issue 2
  • DOI: 10.1002/2014JG002735

Modeling Global Soil Carbon and Soil Microbial Carbon by Integrating Microbial Processes into the Ecosystem Process Model TRIPLEX-GHG: GLOBAL SOIL CARBON AND MICROBIAL CARBON
journal, October 2017

  • Wang, Kefeng; Peng, Changhui; Zhu, Qiuan
  • Journal of Advances in Modeling Earth Systems, Vol. 9, Issue 6
  • DOI: 10.1002/2017MS000920

The role of phosphorus dynamics in tropical forests – a modeling study using CLM-CNP
journal, January 2014


An integrated pan-tropical biomass map using multiple reference datasets
journal, January 2016

  • Avitabile, Valerio; Herold, Martin; Heuvelink, Gerard B. M.
  • Global Change Biology, Vol. 22, Issue 4
  • DOI: 10.1111/gcb.13139

Distribution of aboveground live biomass in the Amazon basin: AGLB IN THE AMAZON BASIN
journal, January 2007


Edaphic factors, successional status and functional traits drive habitat associations of trees in naturally regenerating tropical dry forests
journal, September 2018

  • Werden, Leland K.; Becknell, Justin M.; Powers, Jennifer S.
  • Functional Ecology, Vol. 32, Issue 12
  • DOI: 10.1111/1365-2435.13206

A Method for Scaling Vegetation Dynamics: The Ecosystem Demography Model (ED)
journal, November 2001

  • Moorcroft, P. R.; Hurtt, G. C.; Pacala, S. W.
  • Ecological Monographs, Vol. 71, Issue 4
  • DOI: 10.2307/3100036

Relationships among net primary productivity, nutrients and climate in tropical rain forest: a pan-tropical analysis: Errata
journal, November 2011


Basin-wide variations in Amazon forest structure and function are mediated by both soils and climate
text, January 2012


Recent trends and drivers of regional sources and sinks of carbon dioxide
text, January 2015


Topography shapes the structure, composition and function of tropical forest landscapes.
text, January 2018

  • Jucker, Tommaso; Bongalov, Boris; Burslem, David FRP
  • Apollo - University of Cambridge Repository
  • DOI: 10.17863/cam.24658

Factors of Soil Formation
journal, December 1981


The role of phosphorus dynamics in tropical forests – a modeling study using CLM-CNP
journal, January 2013


Resilience of seed production to a severe El Niño‐induced drought across functional groups and dispersal types
text, January 2018

  • O'Brien, Michael J.; Peréz‐Aviles, Daniel; Powers, Jennifer S.
  • Wiley-Blackwell Publishing, Inc.
  • DOI: 10.5167/uzh-216973

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