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Title: Erratum to: The JBEI quantitative metabolic modeling library (jQMM): A python library for modeling microbial metabolism

Journal Article · · BMC Bioinformatics
 [1];  [2];  [3];  [3];  [3];  [1];  [4];  [5];  [6]
  1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States); DOE Agile BioFoundry, Emeryville, CA (United States)
  2. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States); Indian Institute of Technology (IIT), Kharagpur (India)
  3. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Univ. of California, Berkeley, CA (United States)
  5. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States); Univ. of California, Berkeley, CA (United States); Technical Univ. of Denmark, Horsholm (Denmark)
  6. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States); DOE Agile BioFoundry, Emeryville, CA (United States); BCAM, Basque Center for Applied Mathematics, Bilbao (Spain)

Following publication of this article [1], it has come to our attention that an incomplete version of Fig. 7 was included in this article. The complete figure is shown below with the missing text included to the left of the chart.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1510743
Journal Information:
BMC Bioinformatics, Journal Name: BMC Bioinformatics Journal Issue: 1 Vol. 18; ISSN 1471-2105
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

References (40)

Correlation analysis of targeted proteins and metabolites to assess and engineer microbial isopentenol production: Targeted Proteomics-Based Correlation Analysis journal May 2014
13 C-metabolic flux analysis for batch culture of Escherichia coli and its pyk and pgi gene knockout mutants based on mass isotopomer distribution of intracellular metabolites journal January 2010
13C Metabolic Flux Analysis journal July 2001
The compatibility of potential bioderived fuels with Jet A-1 aviation kerosene journal April 2014
Engineering Cellular Metabolism journal March 2016
Redirecting carbon flux into malonyl-CoA to improve resveratrol titers: Proof of concept for genetic interventions predicted by OptForce computational framework journal November 2013
High-throughput discovery metabolomics journal February 2015
Sustainable consumption within a sustainable economy – beyond green growth and green economies journal January 2014
Modeling soil metabolic processes using isotopologue pairs of position-specific 13C-labeled glucose and pyruvate journal September 2011
Effect of temperature on metabolic activity of intact microbial communities: Evidence for altered metabolic pathway activity but not for increased maintenance respiration and reduced carbon use efficiency journal October 2011
Systems biotechnology for strain improvement journal July 2005
Elementary metabolite units (EMU): A novel framework for modeling isotopic distributions journal January 2007
Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production journal September 2013
A targeted proteomics toolkit for high-throughput absolute quantification of Escherichia coli proteins journal November 2014
Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering journal March 2015
Addressing the Need for Alternative Transportation Fuels: The Joint BioEnergy Institute journal January 2008
Systems metabolic engineering of Escherichia coli for L ‐threonine production journal January 2007
Engineering synergy in biotechnology journal April 2014
The challenges of integrating multi-omic data sets journal October 2010
Accelerated microbial turnover but constant growth efficiency with warming in soil journal September 2014
Improved reproducibility by assuring confidence in measurements in biomedical research journal August 2014
Synthetic and systems biology for microbial production of commodity chemicals journal April 2016
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox journal March 2007
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods journal February 2012
Natural products as biofuels and bio-based chemicals: fatty acids and isoprenoids journal January 2015
Regulatory on/off minimization of metabolic flux changes after genetic perturbations journal May 2005
Analysis of optimality in natural and perturbed metabolic networks journal November 2002
13CFLUX2—high-performance software suite for 13C-metabolic flux analysis journal October 2012
INCA: a computational platform for isotopically non-stationary metabolic flux analysis journal January 2014
Biochemical and Structural Studies of NADH-Dependent FabG Used To Increase the Bacterial Production of Fatty Acids under Anaerobic Conditions journal November 2013
Proteome Analysis of Metabolically Engineered Escherichia coli Producing Poly(3-Hydroxybutyrate) journal January 2001
Metabolic remodeling of white adipose tissue in obesity journal August 2014
OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis journal January 2009
Rational design of 13C-labeling experiments for metabolic flux analysis in mammalian cells journal January 2012
COBRApy: COnstraints-Based Reconstruction and Analysis for Python journal January 2013
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) journal August 2003
Bon-EV: an improved multiple testing procedure for controlling false discovery rates journal January 2017
A Method to Constrain Genome-Scale Models with 13C Labeling Data journal September 2015
The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism journal April 2017
The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism dataset April 2017