Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids

Dong, Jie; Chen, Yan; Benites, Veronica Teixeira; Baidoo, Edward E. K.; Petzold, Christopher J.; Beller, Harry R.; Eudes, Aymerick; Scheller, Henrik V.; Adams, Paul D.; Mukhopadhyay, Aindrila; Simmons, Blake A.; Singer, Steven W.

doi:10.1002/bit.26995

Title: Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids

Authors:

Dong, Jie ^[1]; Chen, Yan ^[1]; Benites, Veronica Teixeira ^[1]; Baidoo, Edward E. K. ^[1]; Petzold, Christopher J. ^[1];

^[2]; Eudes, Aymerick ^[3]; Scheller, Henrik V. ^[3]; Adams, Paul D. ^[4]; Mukhopadhyay, Aindrila ^[5]; Simmons, Blake A. ^[1];

^[1]

Joint BioEnergy Institute Emeryville California, Biological Systems and Engineering Division Lawrence Berkeley National Laboratory Berkeley California
Joint BioEnergy Institute Emeryville California, Earth and Environmental Sciences Lawrence Berkeley National Laboratory Berkeley California
Joint BioEnergy Institute Emeryville California, Environmental Genomics and Systems Biology Division Lawrence Berkeley National Laboratory Berkeley California
Joint BioEnergy Institute Emeryville California, Molecular Biophysics and Integrated Bioimaging Division Lawrence Berkeley National Laboratory Berkeley California
Joint BioEnergy Institute Emeryville California, Biological Systems and Engineering Division Lawrence Berkeley National Laboratory Berkeley California, Environmental Genomics and Systems Biology Division Lawrence Berkeley National Laboratory Berkeley California

Publication Date:: 2019-04-29

Sponsoring Org.:: USDOE

OSTI Identifier:: 1509940

Grant/Contract Number:: DE‐AC02‐05CH11231

Resource Type:: Publisher's Accepted Manuscript

Journal Name:: Biotechnology and Bioengineering

Additional Journal Information:: Journal Name: Biotechnology and Bioengineering Journal Volume: 116 Journal Issue: 8; Journal ID: ISSN 0006-3592

Publisher:: Wiley Blackwell (John Wiley & Sons)

Country of Publication:: United States

Language:: English

Citation Formats


                    Dong, Jie, Chen, Yan, Benites, Veronica Teixeira, Baidoo, Edward E. K., Petzold, Christopher J., Beller, Harry R., Eudes, Aymerick, Scheller, Henrik V., Adams, Paul D., Mukhopadhyay, Aindrila, Simmons, Blake A., and Singer, Steven W. Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids.  United States: N. p., 2019. 
Web.  doi:10.1002/bit.26995.

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                    Dong, Jie, Chen, Yan, Benites, Veronica Teixeira, Baidoo, Edward E. K., Petzold, Christopher J., Beller, Harry R., Eudes, Aymerick, Scheller, Henrik V., Adams, Paul D., Mukhopadhyay, Aindrila, Simmons, Blake A., & Singer, Steven W. Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids.  United States.  https://doi.org/10.1002/bit.26995

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                    Dong, Jie, Chen, Yan, Benites, Veronica Teixeira, Baidoo, Edward E. K., Petzold, Christopher J., Beller, Harry R., Eudes, Aymerick, Scheller, Henrik V., Adams, Paul D., Mukhopadhyay, Aindrila, Simmons, Blake A., and Singer, Steven W. Mon .  
"Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids".  United States.  https://doi.org/10.1002/bit.26995.

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@article{osti_1509940,

  title        = {Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids},

  author       = {Dong, Jie and Chen, Yan and Benites, Veronica Teixeira and Baidoo, Edward E. K. and Petzold, Christopher J. and Beller, Harry R. and Eudes, Aymerick and Scheller, Henrik V. and Adams, Paul D. and Mukhopadhyay, Aindrila and Simmons, Blake A. and Singer, Steven W.},

  abstractNote = {},

  doi          = {10.1002/bit.26995},

  journal      = {Biotechnology and Bioengineering},

  number       = 8,

  volume       = 116,

  place        = {United States},

  year         = {2019},

  month        = {4}

}

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https://doi.org/10.1002/bit.26995

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Works referenced in this record:

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Title: Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids

Citation Formats

Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency journal, January 2015

The generation of fermentation inhibitors during dilute acid hydrolysis of softwood journal, February 1999

Engineering of Bacterial Methyl Ketone Synthesis for Biofuels journal, October 2011

Identification and properties of an inducible phenylacyl-CoA dehydrogenase in Pseudomonas putida KT2440 journal, August 2007

Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin journal, March 2015

Production of Polyhydroxyalkanoates with High 3-Hydroxydodecanoate Monomer Content by fadB and fadA Knockout Mutant of Pseudomonas putida KT2442 journal, August 2007

Regulation of the araC gene of Escherichia coli: catabolite repression, autoregulation, and effect on araBAD expression. journal, July 1984

Membrane Stresses Induced by Overproduction of Free Fatty Acids in Escherichia coli journal, September 2011

Production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) P(3HB-co-3HV) with a broad range of 3HV content at high yields by Burkholderia sacchari IPT 189 journal, July 2007

Metabolism of lignin-related compounds by Rhodococcus rhodochrous: bioconversion of anisoin journal, December 1991

Engineering high-level production of fatty alcohols by Saccharomyces cerevisiae from lignocellulosic feedstocks journal, July 2017

Engineering of Ralstonia eutropha H16 for Autotrophic and Heterotrophic Production of Methyl Ketones journal, May 2013

Construction ofpha-Operon-Defined Knockout Mutants ofPseudomonas putida KT2442 and their Applications in Poly(hydroxyalkanoate) Production journal, February 2007

Chemicals from biomass: technological versus environmental feasibility. A review journal, November 2016

Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression journal, November 2014

Natural products as biofuels and bio-based chemicals: fatty acids and isoprenoids journal, January 2015

Chemical composition and response to dilute-acid pretreatment and enzymatic saccharification of alfalfa, reed canarygrass, and switchgrass journal, October 2006

Lignin Depolymerization and Conversion A Review of Thermochemical Methods journal, November 2010

Substantial improvements in methyl ketone production in E. coli and insights on the pathway from in vitro studies journal, November 2014

Opportunities and challenges in biological lignin valorization journal, December 2016

The Catalytic Valorization of Lignin for the Production of Renewable Chemicals journal, June 2010

Adipic acid production from lignin journal, January 2015

Improving methyl ketone production in Escherichia coli by heterologous expression of NADH-dependent FabG journal, March 2018

Complex Physiology and Compound Stress Responses during Fermentation of Alkali-Pretreated Corn Stover Hydrolysate by an Escherichia coli Ethanologen journal, March 2012

Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification: Reduction in lignin DP enhances saccharification journal, March 2012

Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans-metabolism journal, November 2018

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions journal, October 2016

Evidence for the Essential Function of 2,4-Dienoyl-coenzyme A Reductase in the β-Oxidation of Unsaturated Fatty Acids in Vivo journal, October 1989

Lignin valorization through integrated biological funneling and chemical catalysis journal, August 2014

Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids journal, March 2012

Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli journal, November 2011

Engineering Pseudomonas putida S12 for Efficient Utilization of D-Xylose and L-Arabinose journal, June 2008

Succinic acid production on xylose-enriched biorefinery streams by Actinobacillus succinogenes in batch fermentation journal, February 2016

The emerging role for bacteria in lignin degradation and bio-product formation journal, June 2011

Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals journal, August 2017

Osmotic stress in colony and planktonic cells of Pseudomonas putida mt-2 revealed significant differences in adaptive response mechanisms journal, March 2017

Engineering β-oxidation in Yarrowia lipolytica for methyl ketone production journal, July 2018

Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency
journal, January 2015

The generation of fermentation inhibitors during dilute acid hydrolysis of softwood
journal, February 1999

Engineering of Bacterial Methyl Ketone Synthesis for Biofuels
journal, October 2011

Identification and properties of an inducible phenylacyl-CoA dehydrogenase in Pseudomonas putida KT2440
journal, August 2007

Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin
journal, March 2015

Production of Polyhydroxyalkanoates with High 3-Hydroxydodecanoate Monomer Content by fadB and fadA Knockout Mutant of Pseudomonas putida KT2442
journal, August 2007

Regulation of the araC gene of Escherichia coli: catabolite repression, autoregulation, and effect on araBAD expression.
journal, July 1984

Membrane Stresses Induced by Overproduction of Free Fatty Acids in Escherichia coli
journal, September 2011

Production of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) P(3HB-co-3HV) with a broad range of 3HV content at high yields by Burkholderia sacchari IPT 189
journal, July 2007

Metabolism of lignin-related compounds by Rhodococcus rhodochrous: bioconversion of anisoin
journal, December 1991

Engineering high-level production of fatty alcohols by Saccharomyces cerevisiae from lignocellulosic feedstocks
journal, July 2017

Engineering of Ralstonia eutropha H16 for Autotrophic and Heterotrophic Production of Methyl Ketones
journal, May 2013

Construction ofpha-Operon-Defined Knockout Mutants ofPseudomonas putida KT2442 and their Applications in Poly(hydroxyalkanoate) Production
journal, February 2007

Chemicals from biomass: technological versus environmental feasibility. A review
journal, November 2016

Pseudomonas 2.0: genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression
journal, November 2014

Natural products as biofuels and bio-based chemicals: fatty acids and isoprenoids
journal, January 2015

Chemical composition and response to dilute-acid pretreatment and enzymatic saccharification of alfalfa, reed canarygrass, and switchgrass
journal, October 2006

Lignin Depolymerization and Conversion A Review of Thermochemical Methods
journal, November 2010

Substantial improvements in methyl ketone production in E. coli and insights on the pathway from in vitro studies
journal, November 2014

Opportunities and challenges in biological lignin valorization
journal, December 2016

The Catalytic Valorization of Lignin for the Production of Renewable Chemicals
journal, June 2010

Adipic acid production from lignin
journal, January 2015

Improving methyl ketone production in Escherichia coli by heterologous expression of NADH-dependent FabG
journal, March 2018

Complex Physiology and Compound Stress Responses during Fermentation of Alkali-Pretreated Corn Stover Hydrolysate by an Escherichia coli Ethanologen
journal, March 2012

Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification: Reduction in lignin DP enhances saccharification
journal, March 2012

Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans-metabolism
journal, November 2018

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions
journal, October 2016

Evidence for the Essential Function of 2,4-Dienoyl-coenzyme A Reductase in the β-Oxidation of Unsaturated Fatty Acids in Vivo
journal, October 1989

Lignin valorization through integrated biological funneling and chemical catalysis
journal, August 2014

Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
journal, March 2012

Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli
journal, November 2011

Engineering Pseudomonas putida S12 for Efficient Utilization of D-Xylose and L-Arabinose
journal, June 2008

Succinic acid production on xylose-enriched biorefinery streams by Actinobacillus succinogenes in batch fermentation
journal, February 2016

The emerging role for bacteria in lignin degradation and bio-product formation
journal, June 2011

Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals
journal, August 2017

Osmotic stress in colony and planktonic cells of Pseudomonas putida mt-2 revealed significant differences in adaptive response mechanisms
journal, March 2017

Engineering β-oxidation in Yarrowia lipolytica for methyl ketone production
journal, July 2018