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Title: Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops

Abstract

Since the proposal of Brachypodium distachyon as a model for the grasses, over 500 Bdi-miRNAs have been annotated in miRBase making Brachypodium second in number only to rice. Other monocots, such as switchgrass, are completely absent from the miRBase database. While a significant number of miRNAs have been identified which are highly conserved across plants, little research has been done with respect to the conservation of miRNA targets. Plant responses to abiotic stresses are regulated by diverse pathways many of which involve miRNAs; however, it can be difficult to identify miRNA guided gene regulation when the miRNA is not the primary regulator of the target mRNA.

Authors:
 [1];  [1];  [1];  [2];  [1]; ORCiD logo [1]
  1. Univ. of Delaware, Newark, DE (United States)
  2. Hallym Univ., Chuncheon (Republic of Korea)
Publication Date:
Research Org.:
Univ. of Delaware, Newark, DE (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
OSTI Identifier:
1504900
Grant/Contract Number:  
FG02-07ER64450
Resource Type:
Accepted Manuscript
Journal Name:
BMC Genomics
Additional Journal Information:
Journal Volume: 19; Journal Issue: 1; Journal ID: ISSN 1471-2164
Publisher:
Springer
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 09 BIOMASS FUELS; PARE; Degradome; SmRNA; miRNA; Abiotic stress; Brachypodium; Sorghum; Switchgrass; Bioenergy

Citation Formats

Franke, Karl R., Schmidt, Skye A., Park, Sunhee, Jeong, Dong -Hoon, Accerbi, Monica, and Green, Pamela J.. Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops. United States: N. p., 2018. Web. doi:10.1186/s12864-018-4911-7.
Franke, Karl R., Schmidt, Skye A., Park, Sunhee, Jeong, Dong -Hoon, Accerbi, Monica, & Green, Pamela J.. Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops. United States. doi:10.1186/s12864-018-4911-7.
Franke, Karl R., Schmidt, Skye A., Park, Sunhee, Jeong, Dong -Hoon, Accerbi, Monica, and Green, Pamela J.. Fri . "Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops". United States. doi:10.1186/s12864-018-4911-7. https://www.osti.gov/servlets/purl/1504900.
@article{osti_1504900,
title = {Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops},
author = {Franke, Karl R. and Schmidt, Skye A. and Park, Sunhee and Jeong, Dong -Hoon and Accerbi, Monica and Green, Pamela J.},
abstractNote = {Since the proposal of Brachypodium distachyon as a model for the grasses, over 500 Bdi-miRNAs have been annotated in miRBase making Brachypodium second in number only to rice. Other monocots, such as switchgrass, are completely absent from the miRBase database. While a significant number of miRNAs have been identified which are highly conserved across plants, little research has been done with respect to the conservation of miRNA targets. Plant responses to abiotic stresses are regulated by diverse pathways many of which involve miRNAs; however, it can be difficult to identify miRNA guided gene regulation when the miRNA is not the primary regulator of the target mRNA.},
doi = {10.1186/s12864-018-4911-7},
journal = {BMC Genomics},
number = 1,
volume = 19,
place = {United States},
year = {2018},
month = {7}
}

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Works referenced in this record:

Basic local alignment search tool
journal, October 1990

  • Altschul, Stephen F.; Gish, Warren; Miller, Webb
  • Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410
  • DOI: 10.1016/S0022-2836(05)80360-2