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Title: Distribution of mechanical stress in the Escherichia coli cell envelope

Abstract

The cell envelope in Gram-negative bacteria comprises two distinct membranes with a cell wall between them. There has been a growing interest in understanding the mechanical adaptation of this cell envelope to the osmotic pressure (or turgor pressure), which is generated by the difference in the concentration of solutes between the cytoplasm and the external environment. However, it remains unexplored how the cell wall, the inner membrane (IM), and the outer membrane (OM) effectively protect the cell from this pressure by bearing the resulting surface tension, thus preventing the formation of inner membrane bulges, abnormal cell morphology, spheroplasts and cell lysis. In this study, we have used molecular dynamics (MD) simulations combined with experiments to resolve how and to what extent models of the IM, OM, and cell wall respond to changes in surface tension. We calculated the area compressibility modulus of all three components in simulations from tension-area isotherms. Experiments on monolayers mimicking individual leaflets of the IM and OM were also used to characterize their compressibility. While the membranes become softer as they expand, the cell wall exhibits significant strain stiffening at moderate to high tensions. We integrate these results into a model of the cell envelope inmore » which the OM and cell wall share the tension at low turgor pressure (0.3 atm) but the tension in the cell wall dominates at high values (>1 atm).« less

Authors:
; ORCiD logo; ; ORCiD logo; ORCiD logo
Publication Date:
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1576681
Alternate Identifier(s):
OSTI ID: 1504012
Grant/Contract Number:  
SC0014664; AC05-00OR22725
Resource Type:
Published Article
Journal Name:
Biochimica et Biophysica Acta. Biomembranes
Additional Journal Information:
Journal Name: Biochimica et Biophysica Acta. Biomembranes Journal Volume: 1860 Journal Issue: 12; Journal ID: ISSN 0005-2736
Publisher:
Elsevier
Country of Publication:
Netherlands
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Membrane mechanics; Area compressibility; Turgor pressure; Bacterial cell wall; Lipopolysaccharides

Citation Formats

Hwang, Hyea, Paracini, Nicolò, Parks, Jerry M., Lakey, Jeremy H., and Gumbart, James C. Distribution of mechanical stress in the Escherichia coli cell envelope. Netherlands: N. p., 2018. Web. doi:10.1016/j.bbamem.2018.09.020.
Hwang, Hyea, Paracini, Nicolò, Parks, Jerry M., Lakey, Jeremy H., & Gumbart, James C. Distribution of mechanical stress in the Escherichia coli cell envelope. Netherlands. https://doi.org/10.1016/j.bbamem.2018.09.020
Hwang, Hyea, Paracini, Nicolò, Parks, Jerry M., Lakey, Jeremy H., and Gumbart, James C. Sat . "Distribution of mechanical stress in the Escherichia coli cell envelope". Netherlands. https://doi.org/10.1016/j.bbamem.2018.09.020.
@article{osti_1576681,
title = {Distribution of mechanical stress in the Escherichia coli cell envelope},
author = {Hwang, Hyea and Paracini, Nicolò and Parks, Jerry M. and Lakey, Jeremy H. and Gumbart, James C.},
abstractNote = {The cell envelope in Gram-negative bacteria comprises two distinct membranes with a cell wall between them. There has been a growing interest in understanding the mechanical adaptation of this cell envelope to the osmotic pressure (or turgor pressure), which is generated by the difference in the concentration of solutes between the cytoplasm and the external environment. However, it remains unexplored how the cell wall, the inner membrane (IM), and the outer membrane (OM) effectively protect the cell from this pressure by bearing the resulting surface tension, thus preventing the formation of inner membrane bulges, abnormal cell morphology, spheroplasts and cell lysis. In this study, we have used molecular dynamics (MD) simulations combined with experiments to resolve how and to what extent models of the IM, OM, and cell wall respond to changes in surface tension. We calculated the area compressibility modulus of all three components in simulations from tension-area isotherms. Experiments on monolayers mimicking individual leaflets of the IM and OM were also used to characterize their compressibility. While the membranes become softer as they expand, the cell wall exhibits significant strain stiffening at moderate to high tensions. We integrate these results into a model of the cell envelope in which the OM and cell wall share the tension at low turgor pressure (0.3 atm) but the tension in the cell wall dominates at high values (>1 atm).},
doi = {10.1016/j.bbamem.2018.09.020},
journal = {Biochimica et Biophysica Acta. Biomembranes},
number = 12,
volume = 1860,
place = {Netherlands},
year = {Sat Dec 01 00:00:00 EST 2018},
month = {Sat Dec 01 00:00:00 EST 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1016/j.bbamem.2018.09.020

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Cited by: 55 works
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Works referenced in this record:

Response of Escherichia coli growth rate to osmotic shock
journal, May 2014

  • Rojas, E.; Theriot, J. A.; Huang, K. C.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 21
  • DOI: 10.1073/pnas.1402591111

Nonlinear elasticity in biological gels
journal, May 2005

  • Storm, Cornelis; Pastore, Jennifer J.; MacKintosh, F. C.
  • Nature, Vol. 435, Issue 7039
  • DOI: 10.1038/nature03521

Protein area occupancy at the center of the red blood cell membrane
journal, February 2008

  • Dupuy, A. D.; Engelman, D. M.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 8
  • DOI: 10.1073/pnas.0712379105

Constant surface tension simulations of lipid bilayers: The sensitivity of surface areas and compressibilities
journal, July 1999

  • Feller, Scott E.; Pastor, Richard W.
  • The Journal of Chemical Physics, Vol. 111, Issue 3
  • DOI: 10.1063/1.479313

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale
journal, September 2014

  • Liu, Joanne K.; O’Brien, Edward J.; Lerman, Joshua A.
  • BMC Systems Biology, Vol. 8, Issue 1
  • DOI: 10.1186/s12918-014-0110-6

Monolayer Film Behavior of Lipopolysaccharide from Pseudomonas aeruginosa at the Air−Water Interface
journal, October 2008

  • Abraham, Thomas; Schooling, Sarah R.; Beveridge, Terry J.
  • Biomacromolecules, Vol. 9, Issue 10
  • DOI: 10.1021/bm800562r

Elasticity and Phase Behavior of DPPC Membrane Modulated by Cholesterol, Ergosterol, and Ethanol
journal, October 2005


The Biophysics of the Gram-Negative Periplasmic Space
journal, January 1998


Cryo-Transmission Electron Microscopy of Frozen-Hydrated Sections of Escherichia coli and Pseudomonas aeruginosa
journal, October 2003


The Bacterial Cell Envelope
journal, April 2010


Scalable molecular dynamics with NAMD
journal, January 2005

  • Phillips, James C.; Braun, Rosemary; Wang, Wei
  • Journal of Computational Chemistry, Vol. 26, Issue 16, p. 1781-1802
  • DOI: 10.1002/jcc.20289

Electroporation of the E. coli and S. Aureus Membranes: Molecular Dynamics Simulations of Complex Bacterial Membranes
journal, November 2011

  • Piggot, Thomas J.; Holdbrook, Daniel A.; Khalid, Syma
  • The Journal of Physical Chemistry B, Vol. 115, Issue 45
  • DOI: 10.1021/jp207013v

MreB Actin-Mediated Segregation of a Specific Region of a Bacterial Chromosome
journal, February 2005


Morphology, Growth, and Size Limit of Bacterial Cells
journal, July 2010


Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria
journal, June 2015

  • Rassam, Patrice; Copeland, Nikki A.; Birkholz, Oliver
  • Nature, Vol. 523, Issue 7560
  • DOI: 10.1038/nature14461

Molecular Dynamics Simulations of Hydrophilic Pores in Lipid Bilayers
journal, April 2004


Effect of Chain Length and Unsaturation on Elasticity of Lipid Bilayers
journal, July 2000


Structure of lipid bilayers
journal, November 2000

  • Nagle, John F.; Tristram-Nagle, Stephanie
  • Biochimica et Biophysica Acta (BBA) - Reviews on Biomembranes, Vol. 1469, Issue 3
  • DOI: 10.1016/S0304-4157(00)00016-2

Covalent lipoprotein from the outer membrane of escherichia coli
journal, October 1975


Lateral pressure in membranes
journal, October 1996


Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli
journal, December 1991


Growth of the Stress-Bearing and Shape-Maintaining Murein Sacculus of Escherichia coli
journal, January 1998


Thickness and Elasticity of Gram-Negative Murein Sacculi Measured by Atomic Force Microscopy
journal, November 1999


Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis
journal, August 2016

  • Arunmanee, Wanatchaporn; Pathania, Monisha; Solovyova, Alexandra S.
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 34
  • DOI: 10.1073/pnas.1602382113

Murein-lipoprotein of Escherichia coli: A protein involved in the stabilization of bacterial cell envelope
journal, January 1978

  • Suzuki, Hideho; Nishimura, Yukinobu; Yasuda, Seiichi
  • Molecular and General Genetics MGG, Vol. 167, Issue 1
  • DOI: 10.1007/BF00270315

Mechanical properties of lipid bilayers from molecular dynamics simulation
journal, November 2015


Phosphatidylethanolamine-Phosphatidylglycerol Bilayer as a Model of the Inner Bacterial Membrane
journal, February 2005


Lipopolysaccharide Endotoxins
journal, June 2002


Molecular Basis of Bacterial Outer Membrane Permeability Revisited
journal, December 2003


OmpA: A Flexible Clamp for Bacterial Cell Wall Attachment
journal, December 2016


Mechanics of membrane bulging during cell-wall disruption in Gram-negative bacteria
journal, April 2011


Molecular imaging of glycan chains couples cell-wall polysaccharide architecture to bacterial cell morphology
journal, March 2018


Communication across the bacterial cell envelope depends on the size of the periplasm
journal, December 2017


GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
journal, September 2015


CHARMM-GUI Membrane Builder toward realistic biological membrane simulations
journal, August 2014

  • Wu, Emilia L.; Cheng, Xi; Jo, Sunhwan
  • Journal of Computational Chemistry, Vol. 35, Issue 27
  • DOI: 10.1002/jcc.23702

Inclusion of Many-Body Effects in the Additive CHARMM Protein CMAP Potential Results in Enhanced Cooperativity of α-Helix and β-Hairpin Formation
journal, September 2012


Macromolecular crowding: obvious but underappreciated
journal, October 2001


Peptidoglycan transformations during Bacillus subtilis sporulation : Peptidoglycan remodelling
journal, March 2013

  • Tocheva, Elitza I.; López-Garrido, Javier; Hughes, H. Velocity
  • Molecular Microbiology, Vol. 88, Issue 4
  • DOI: 10.1111/mmi.12201

Constant pressure molecular dynamics simulation: The Langevin piston method
journal, September 1995

  • Feller, Scott E.; Zhang, Yuhong; Pastor, Richard W.
  • The Journal of Chemical Physics, Vol. 103, Issue 11
  • DOI: 10.1063/1.470648

Architecture and assembly of the Gram-positive cell wall: Gram-positive peptidoglycan structure
journal, April 2013

  • Beeby, Morgan; Gumbart, James C.; Roux, Benoît
  • Molecular Microbiology, Vol. 88, Issue 4
  • DOI: 10.1111/mmi.12203

Dynamics of Escherichia coli ’s passive response to a sudden decrease in external osmolarity
journal, September 2016

  • Buda, Renata; Liu, Yunxiao; Yang, Jin
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 40
  • DOI: 10.1073/pnas.1522185113

Critical Temperature of 1-Palmitoyl-2-oleoyl- sn -glycero-3-phosphoethanolamine Monolayers and Its Possible Biological Relevance
journal, July 2017

  • Borrell, Jordi H.; Domènech, Òscar
  • The Journal of Physical Chemistry B, Vol. 121, Issue 28
  • DOI: 10.1021/acs.jpcb.7b04021

Structural Characterization of a Model Gram-Negative Bacterial Surface Using Lipopolysaccharides from Rough Strains of Escherichia coli
journal, May 2013

  • Le Brun, Anton P.; Clifton, Luke A.; Halbert, Candice E.
  • Biomacromolecules, Vol. 14, Issue 6
  • DOI: 10.1021/bm400356m

Role of the Native Outer-Membrane Environment on the Transporter BtuB
journal, October 2016


Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
journal, June 2010

  • Klauda, Jeffery B.; Venable, Richard M.; Freites, J. Alfredo
  • The Journal of Physical Chemistry B, Vol. 114, Issue 23
  • DOI: 10.1021/jp101759q

Quantitative determination of ion distributions in bacterial lipopolysaccharide membranes by grazing-incidence X-ray fluorescence
journal, May 2010

  • Schneck, E.; Schubert, T.; Konovalov, O. V.
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 20
  • DOI: 10.1073/pnas.0913737107

A unified formulation of the constant temperature molecular dynamics methods
journal, July 1984

  • Nosé, Shuichi
  • The Journal of Chemical Physics, Vol. 81, Issue 1
  • DOI: 10.1063/1.447334

Membrane models of E. coli containing cyclic moieties in the aliphatic lipid chain
journal, May 2012

  • Pandit, Kunal R.; Klauda, Jeffery B.
  • Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1818, Issue 5
  • DOI: 10.1016/j.bbamem.2012.01.009

Protein Diffusion in the Periplasm of E. coli under Osmotic Stress
journal, January 2011


Molecular dynamics simulations of rupture in lipid bilayers
journal, February 2010

  • Tomasini, Michael D.; Rinaldi, Carlos; Tomassone, M. Silvina
  • Experimental Biology and Medicine, Vol. 235, Issue 2
  • DOI: 10.1258/ebm.2009.009187

Core structure of the outer membrane lipoprotein from Escherichia coli at 1.9 å resolution 1 1Edited by D. Rees
journal, June 2000


Membrane stiffness is modified by integral membrane proteins
journal, January 2016

  • Fowler, Philip W.; Hélie, Jean; Duncan, Anna
  • Soft Matter, Vol. 12, Issue 37
  • DOI: 10.1039/C6SM01186A

Coarse-grained simulations of membranes under tension
journal, March 2010

  • Neder, Jörg; West, Beate; Nielaba, Peter
  • The Journal of Chemical Physics, Vol. 132, Issue 11
  • DOI: 10.1063/1.3352583

Entropic Tension in Crowded Membranes
journal, March 2012


Simulation of Pore Formation in Lipid Bilayers by Mechanical Stress and Electric Fields
journal, May 2003

  • Tieleman, D. Peter; Leontiadou, Hari; Mark, Alan E.
  • Journal of the American Chemical Society, Vol. 125, Issue 21
  • DOI: 10.1021/ja029504i

Cryo-EM structure of the ribosome–SecYE complex in the membrane environment
journal, April 2011

  • Frauenfeld, Jens; Gumbart, James; Sluis, Eli O. van der
  • Nature Structural & Molecular Biology, Vol. 18, Issue 5
  • DOI: 10.1038/nsmb.2026

Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
journal, June 1993

  • Darden, Tom; York, Darrin; Pedersen, Lee
  • The Journal of Chemical Physics, Vol. 98, Issue 12
  • DOI: 10.1063/1.464397

Pal Lipoprotein of Escherichia coli Plays a Major Role in Outer Membrane Integrity
journal, February 2002


Direct Measurement of Cell Wall Stress Stiffening and Turgor Pressure in Live Bacterial Cells
journal, October 2011


Strain Stiffening in Synthetic and Biopolymer Networks
journal, May 2010

  • Erk, Kendra A.; Henderson, Kevin J.; Shull, Kenneth R.
  • Biomacromolecules, Vol. 11, Issue 5
  • DOI: 10.1021/bm100136y

Mechanisms for maintaining cell shape in rod-shaped Gram-negative bacteria: Rod-shape maintenance in Gram-negative bacteria
journal, April 2011


Microsecond Molecular Dynamics Simulations of Lipid Mixing
journal, September 2014

  • Hong, Chunkit; Tieleman, D. Peter; Wang, Yi
  • Langmuir, Vol. 30, Issue 40
  • DOI: 10.1021/la502363b

The outer membrane is an essential load-bearing element in Gram-negative bacteria
journal, July 2018


Water Permeability and Mechanical Strength of Polyunsaturated Lipid Bilayers
journal, July 2000


Polymorphic transitions in single crystals: A new molecular dynamics method
journal, December 1981

  • Parrinello, M.; Rahman, A.
  • Journal of Applied Physics, Vol. 52, Issue 12
  • DOI: 10.1063/1.328693

Peptidoglycan structure and architecture
journal, March 2008


Architecture of peptidoglycan: more data and more models
journal, February 2010


Escherichia coli Peptidoglycan Structure and Mechanics as Predicted by Atomic-Scale Simulations
journal, February 2014


Pressure−Area Isotherm of a Lipid Monolayer from Molecular Dynamics Simulations
journal, December 2007

  • Baoukina, Svetlana; Monticelli, Luca; Marrink, Siewert J.
  • Langmuir, Vol. 23, Issue 25
  • DOI: 10.1021/la702286h

Canonical dynamics: Equilibrium phase-space distributions
journal, March 1985


Molecular organization of Gram-negative peptidoglycan
journal, November 2008

  • Gan, L.; Chen, S.; Jensen, G. J.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 48
  • DOI: 10.1073/pnas.0808035105

Atomic force microscopy and theoretical considerations of surface properties and turgor pressures of bacteria
journal, February 2002


Fast, Multiphase Volume Adaptation to Hyperosmotic Shock by Escherichia coli
journal, April 2012


Elastic deformation and failure of lipid bilayer membranes containing cholesterol
journal, October 1990


Effect of membrane tension on the physical properties of DOPC lipid bilayer membrane
journal, September 2012

  • Reddy, A. Srinivas; Warshaviak, Dora Toledo; Chachisvilis, Mirianas
  • Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1818, Issue 9
  • DOI: 10.1016/j.bbamem.2012.05.006

Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations
journal, September 2000

  • Lindahl, Erik; Edholm, Olle
  • The Journal of Chemical Physics, Vol. 113, Issue 9
  • DOI: 10.1063/1.1287423

Elasticity of the sacculus of Escherichia coli.
journal, January 1992


Bacterial turgor pressure can be measured by atomic force microscopy
journal, July 2000


Atomistic simulation of lipid and DiI dynamics in membrane bilayers under tension
journal, January 2011

  • Muddana, Hari S.; Gullapalli, Ramachandra R.; Manias, Evangelos
  • Phys. Chem. Chem. Phys., Vol. 13, Issue 4
  • DOI: 10.1039/C0CP00430H

Molecular dynamics simulations of lipid membranes with lateral force: Rupture and dynamic properties
journal, March 2014

  • Xie, Jun Yu; Ding, Guang Hong; Karttunen, Mikko
  • Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1838, Issue 3
  • DOI: 10.1016/j.bbamem.2013.12.011

Optical Measurement of Cell Membrane Tension
journal, November 2006


VMD: Visual molecular dynamics
journal, February 1996


Elastic Behavior of Cross-Linked and Bundled Actin Networks
journal, May 2004


Bacterial lipopolysaccharides form physically cross-linked, two-dimensional gels in the presence of divalent cations
journal, January 2015

  • Herrmann, Moritz; Schneck, Emanuel; Gutsmann, Thomas
  • Soft Matter, Vol. 11, Issue 30
  • DOI: 10.1039/C5SM01002K