Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray)
Abstract
Natural rubber is currently produced nearly exclusively from latex of the Para rubber tree, Hevea brasiliensis. The desire to reduce the environmental cost of rubber production, fears of pathogen susceptibility in clonal Hevea plantations, volatility in the price of natural rubber, and increasing labor costs have motivated efforts to diversify the supply of natural rubber by developing alternative rubber crops such as guayule (Parthenium argentatum Gray). In Hevea, latex is produced as an exudate following wounding while in guayule, rubber is deposited within the cortical parenchyma and its production is strongly influenced by environmental conditions. To better understand the enzymology and regulation of guayule rubber biosynthesis and to identify genes with potential uses in the improvement of rubber yields, we conducted de novo transcriptome assembly and differential gene expression analyses of this process in guayule. This analysis supports a role for rubber in the defense against pathogens, identified new enzymes potentially involved in the biosynthesis of rubber as well as transcription factors specifically expressed in rubber-producing tissues. Data presented here will be useful in the improvement of guayule as an alternative source of natural rubber and in better understanding the biosynthesis of this critical polymer. In particular, some of themore »
- Authors:
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1618607
- Alternate Identifier(s):
- OSTI ID: 1502858
- Report Number(s):
- LBNL-CRADA-2001189
Journal ID: ISSN 1471-2229; 71; PII: 1669
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Published Article
- Journal Name:
- BMC Plant Biology
- Additional Journal Information:
- Journal Name: BMC Plant Biology Journal Volume: 19 Journal Issue: 1; Journal ID: ISSN 1471-2229
- Publisher:
- Springer Science + Business Media
- Country of Publication:
- United Kingdom
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Stonebloom, Solomon H., and Scheller, Henrik Vibe. Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray). United Kingdom: N. p., 2019.
Web. doi:10.1186/s12870-019-1669-2.
Stonebloom, Solomon H., & Scheller, Henrik Vibe. Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray). United Kingdom. https://doi.org/10.1186/s12870-019-1669-2
Stonebloom, Solomon H., and Scheller, Henrik Vibe. Tue .
"Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray)". United Kingdom. https://doi.org/10.1186/s12870-019-1669-2.
@article{osti_1618607,
title = {Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray)},
author = {Stonebloom, Solomon H. and Scheller, Henrik Vibe},
abstractNote = {Natural rubber is currently produced nearly exclusively from latex of the Para rubber tree, Hevea brasiliensis. The desire to reduce the environmental cost of rubber production, fears of pathogen susceptibility in clonal Hevea plantations, volatility in the price of natural rubber, and increasing labor costs have motivated efforts to diversify the supply of natural rubber by developing alternative rubber crops such as guayule (Parthenium argentatum Gray). In Hevea, latex is produced as an exudate following wounding while in guayule, rubber is deposited within the cortical parenchyma and its production is strongly influenced by environmental conditions. To better understand the enzymology and regulation of guayule rubber biosynthesis and to identify genes with potential uses in the improvement of rubber yields, we conducted de novo transcriptome assembly and differential gene expression analyses of this process in guayule. This analysis supports a role for rubber in the defense against pathogens, identified new enzymes potentially involved in the biosynthesis of rubber as well as transcription factors specifically expressed in rubber-producing tissues. Data presented here will be useful in the improvement of guayule as an alternative source of natural rubber and in better understanding the biosynthesis of this critical polymer. In particular, some of the candidate transcription factors are likely to control the rubber biosynthesis pathway and are good targets for molecular breeding or engineering of guayule plants with higher and more consistent production of rubber.},
doi = {10.1186/s12870-019-1669-2},
journal = {BMC Plant Biology},
number = 1,
volume = 19,
place = {United Kingdom},
year = {Tue Feb 12 00:00:00 EST 2019},
month = {Tue Feb 12 00:00:00 EST 2019}
}
https://doi.org/10.1186/s12870-019-1669-2
Web of Science
Figures / Tables:
Works referenced in this record:
Immunogenicity studies of guayule and guayule latex in occupationally exposed workers
journal, January 2010
- Hamilton, Robert G.; Cornish, Katrina
- Industrial Crops and Products, Vol. 31, Issue 1
A Lettuce ( Lactuca sativa ) Homolog of Human Nogo-B Receptor Interacts with cis -Prenyltransferase and Is Necessary for Natural Rubber Biosynthesis
journal, December 2014
- Qu, Yang; Chakrabarty, Romit; Tran, Hue T.
- Journal of Biological Chemistry, Vol. 290, Issue 4
Plant homeodomain-leucine zipper I transcription factors exhibit different functional AHA motifs that selectively interact with TBP or/and TFIIB
journal, February 2014
- Capella, Matías; Ré, Delfina A.; Arce, Agustín L.
- Plant Cell Reports, Vol. 33, Issue 6
The Accumulation of Oleosins Determines the Size of Seed Oilbodies in Arabidopsis
journal, July 2006
- Siloto, Rodrigo M. P.; Findlay, Kim; Lopez-Villalobos, Arturo
- The Plant Cell, Vol. 18, Issue 8
Highlights on Hevea brasiliensis (pro)hevein proteins
journal, August 2016
- Berthelot, Karine; Peruch, Frédéric; Lecomte, Sophie
- Biochimie, Vol. 127
RD26 mediates crosstalk between drought and brassinosteroid signalling pathways
journal, February 2017
- Ye, Huaxun; Liu, Sanzhen; Tang, Buyun
- Nature Communications, Vol. 8, Issue 1
Distribution, Development and Structure of Resin Ducts in Guayule (Parthenium argentatum Gray)
journal, March 1988
- Joseph, Joy P.; Shah, J. J.; Inamdar, J. A.
- Annals of Botany, Vol. 61, Issue 3
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
journal, November 2009
- Robinson, M. D.; McCarthy, D. J.; Smyth, G. K.
- Bioinformatics, Vol. 26, Issue 1
The rubber tree genome reveals new insights into rubber production and species adaptation
journal, May 2016
- Tang, Chaorong; Yang, Meng; Fang, Yongjun
- Nature Plants, Vol. 2, Issue 6
Arabidopsis COLD SHOCK DOMAIN PROTEIN2 is a RNA chaperone that is regulated by cold and developmental signals
journal, December 2007
- Sasaki, Kentaro; Kim, Myung-Hee; Imai, Ryozo
- Biochemical and Biophysical Research Communications, Vol. 364, Issue 3
Effects of Temperature on Rubber Accumulation by the Guayule Plant
journal, December 1943
- Bonner, James
- Botanical Gazette, Vol. 105, Issue 2
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
journal, July 2013
- Haas, Brian J.; Papanicolaou, Alexie; Yassour, Moran
- Nature Protocols, Vol. 8, Issue 8
The low temperature induced rate of 3-hydroxy-3-methylglutaryl-CoA reductase in Parthenium argentatum Gray limits the theoretical rate of rubber formation
journal, November 2014
- Benedict, C. R.; Rosenfield, C. L.
- Industrial Crops and Products, Vol. 61
Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network
journal, March 2015
- Park, Sunchung; Lee, Chin-Mei; Doherty, Colleen J.
- The Plant Journal, Vol. 82, Issue 2
cis -Polyisoprene Synthesis in Guayule Plants ( Parthenium argentatum Gray) Exposed to Low, Nonfreezing Temperatures
journal, March 1984
- Goss, Rachel A.; Benedict, Chauncey R.; Keithly, James H.
- Plant Physiology, Vol. 74, Issue 3
Night temperature, rubber production, and carbon exchange in guayule
journal, January 2007
- Veatch-Blohm, M. E.; Ray, D. T.; Gehrels, A.
- Industrial Crops and Products, Vol. 25, Issue 1
A transgene design for enhancing oil content in Arabidopsis and Camelina seeds
journal, February 2018
- Zhu, Yerong; Xie, Linan; Chen, Grace Q.
- Biotechnology for Biofuels, Vol. 11, Issue 1
RNA-Seq analysis in MeV
journal, October 2011
- Howe, E. A.; Sinha, R.; Schlauch, D.
- Bioinformatics, Vol. 27, Issue 22
Current trends of rubber plantation expansion may threaten biodiversity and livelihoods
journal, September 2015
- Ahrends, Antje; Hollingsworth, Peter M.; Ziegler, Alan D.
- Global Environmental Change, Vol. 34
The Effect of soil Temperature on Guayule Plants
journal, July 1950
- Benedict, H. M.
- Plant Physiology, Vol. 25, Issue 3
Induction of rubber transferase activity in guayule (Parthenium argentatum Gray) by low temperatures
journal, March 2003
- Cornish, Katrina; Backhaus, Ralph A.
- Industrial Crops and Products, Vol. 17, Issue 2
Overexpression of a Populus euphratica CBF4 gene in poplar confers tolerance to multiple stresses
journal, October 2016
- Tian, Qianqian; Chen, Jinhuan; Wang, Dan
- Plant Cell, Tissue and Organ Culture (PCTOC), Vol. 128, Issue 2
Seasonal Variations in Rubber Biosynthesis, 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase, and Rubber Transferase Activities in Parthenium argentatum in the Chihuahuan Desert
journal, October 1993
- Ji, W.; Benedict, C. R.; Foster, M. A.
- Plant Physiology, Vol. 103, Issue 2
Specialization of Oleosins in Oil Body Dynamics during Seed Development in Arabidopsis Seeds
journal, February 2014
- Miquel, Martine; Trigui, Ghassen; d’Andréa, Sabine
- Plant Physiology, Vol. 164, Issue 4
Guayule ploidy levels in a native population
journal, May 1997
- Kuruvadi, Sathyanarayanaiah; Rodríguez, María Esther Alcalá; López-Benítez, Alfonso
- Industrial Crops and Products, Vol. 6, Issue 2
Cytochrome P450 CYP79A2 from Arabidopsis thaliana L. Catalyzes the Conversion of l-Phenylalanine to Phenylacetaldoxime in the Biosynthesis of Benzylglucosinolate
journal, May 2000
- Wittstock, Ute; Halkier, Barbara Ann
- Journal of Biological Chemistry, Vol. 275, Issue 19
AtMYB14 Regulates Cold Tolerance in Arabidopsis
journal, June 2012
- Chen, Yan; Chen, Zhangliang; Kang, Juqing
- Plant Molecular Biology Reporter, Vol. 31, Issue 1
The Major Protein of Guayule Rubber Particles Is a Cytochrome P450: CHARACTERIZATION BASED ON cDNA CLONING AND SPECTROSCOPIC ANALYSIS OF THE SOLUBILIZED ENZYME AND ITS REACTION PRODUCTS
journal, April 1995
- Pan, Zhiqiang; Durst, Francis; Werck-Reichhart, Daniele
- Journal of Biological Chemistry, Vol. 270, Issue 15
Complex Ploidy Level Variation in Guayule Breeding Programs
journal, January 2011
- Gore, Michael A.; Coyle, Gwen; Friebe, Bernd
- Crop Science, Vol. 51, Issue 1
Effect of environmental conditions on growth and rubber production of guayule (Parthenium argentatum)
journal, January 1985
- Downes, Rw; Tonnet, Ml
- Australian Journal of Agricultural Research, Vol. 36, Issue 2
Transcriptome and gene expression analysis in cold-acclimated guayule (Parthenium argentatum) rubber-producing tissue
journal, July 2012
- Ponciano, Grisel; McMahan, Colleen M.; Xie, Wenshuang
- Phytochemistry, Vol. 79, p. 57-66
Identification of a New Class of Lipid Droplet-Associated Proteins in Plants
journal, July 2013
- Horn, Patrick J.; James, Christopher N.; Gidda, Satinder K.
- Plant Physiology, Vol. 162, Issue 4
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