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Title: Deep‐sea hydrothermal vent metagenome‐assembled genomes provide insight into the phylum Nanoarchaeota

Authors:
 [1];  [2];  [1]; ORCiD logo [1]
  1. Department of BiologyPortland State University Portland OR 97201 USA
  2. Department of BiologyCalifornia State University Northridge CA 91330 USA
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1501747
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
Environmental Microbiology Reports
Additional Journal Information:
Journal Name: Environmental Microbiology Reports Journal Volume: 11 Journal Issue: 2; Journal ID: ISSN 1758-2229
Publisher:
Wiley-Blackwell
Country of Publication:
United States
Language:
English

Citation Formats

St. John, Emily, Flores, Gilberto E., Meneghin, Jennifer, and Reysenbach, Anna‐Louise. Deep‐sea hydrothermal vent metagenome‐assembled genomes provide insight into the phylum Nanoarchaeota. United States: N. p., 2019. Web. doi:10.1111/1758-2229.12740.
St. John, Emily, Flores, Gilberto E., Meneghin, Jennifer, & Reysenbach, Anna‐Louise. Deep‐sea hydrothermal vent metagenome‐assembled genomes provide insight into the phylum Nanoarchaeota. United States. doi:10.1111/1758-2229.12740.
St. John, Emily, Flores, Gilberto E., Meneghin, Jennifer, and Reysenbach, Anna‐Louise. Mon . "Deep‐sea hydrothermal vent metagenome‐assembled genomes provide insight into the phylum Nanoarchaeota". United States. doi:10.1111/1758-2229.12740.
@article{osti_1501747,
title = {Deep‐sea hydrothermal vent metagenome‐assembled genomes provide insight into the phylum Nanoarchaeota},
author = {St. John, Emily and Flores, Gilberto E. and Meneghin, Jennifer and Reysenbach, Anna‐Louise},
abstractNote = {},
doi = {10.1111/1758-2229.12740},
journal = {Environmental Microbiology Reports},
number = 2,
volume = 11,
place = {United States},
year = {2019},
month = {3}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.1111/1758-2229.12740

Citation Metrics:
Cited by: 1 work
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Works referenced in this record:

Uncultivated microbes in need of their own taxonomy
journal, July 2017

  • Konstantinidis, Konstantinos T.; Rosselló-Móra, Ramon; Amann, Rudolf
  • The ISME Journal, Vol. 11, Issue 11
  • DOI: 10.1038/ismej.2017.113

Life without RNase P
journal, May 2008

  • Randau, Lennart; Schröder, Imke; Söll, Dieter
  • Nature, Vol. 453, Issue 7191
  • DOI: 10.1038/nature06833

An updated evolutionary classification of CRISPR–Cas systems
journal, September 2015

  • Makarova, Kira S.; Wolf, Yuri I.; Alkhnbashi, Omer S.
  • Nature Reviews Microbiology, Vol. 13, Issue 11, p. 722-736
  • DOI: 10.1038/nrmicro3569

Nanoarchaeal 16S rRNA gene sequences are widely dispersed in hyperthermophilic and mesophilic halophilic environments
journal, June 2008


RNase P: interface of the RNA and protein worlds
journal, June 2006

  • Evans, Donald; Marquez, Steven M.; Pace, Norman R.
  • Trends in Biochemical Sciences, Vol. 31, Issue 6
  • DOI: 10.1016/j.tibs.2006.04.007

Enzymatic Characterization of AMP Phosphorylase and Ribose-1,5-Bisphosphate Isomerase Functioning in an Archaeal AMP Metabolic Pathway
journal, October 2012

  • Aono, R.; Sato, T.; Yano, A.
  • Journal of Bacteriology, Vol. 194, Issue 24
  • DOI: 10.1128/JB.01335-12

Extreme genome reduction in symbiotic bacteria
journal, November 2011

  • McCutcheon, John P.; Moran, Nancy A.
  • Nature Reviews Microbiology, Vol. 10, Issue 1
  • DOI: 10.1038/nrmicro2670

Transfer RNA genes in pieces
journal, June 2008


Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
journal, January 2018


High abundances of viruses in a deep-sea hydrothermal vent system indicates viral mediated microbial mortality
journal, August 2005

  • Ortmann, Alice C.; Suttle, Curtis A.
  • Deep Sea Research Part I: Oceanographic Research Papers, Vol. 52, Issue 8
  • DOI: 10.1016/j.dsr.2005.04.002

Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment
journal, July 2016

  • Wurch, Louie; Giannone, Richard J.; Belisle, Bernard S.
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms12115

Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5′- and 3′-halves
journal, February 2005

  • Randau, Lennart; Münch, Richard; Hohn, Michael J.
  • Nature, Vol. 433, Issue 7025
  • DOI: 10.1038/nature03233

Multi-omics analysis provides insight to the Ignicoccus hospitalis-Nanoarchaeum equitans association
journal, September 2017

  • Rawle, Rachel A.; Hamerly, Timothy; Tripet, Brian P.
  • Biochimica et Biophysica Acta (BBA) - General Subjects, Vol. 1861, Issue 9
  • DOI: 10.1016/j.bbagen.2017.06.001

The phosphofructokinase-B (MJ0406) from Methanocaldococcus jannaschii represents a nucleoside kinase with a broad substrate specificity
journal, October 2006


Microbial life in Bourlyashchy, the hottest thermal pool of Uzon Caldera, Kamchatka
journal, September 2015


Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis
journal, September 2018


A new symbiotic nanoarchaeote (Candidatus Nanoclepta minutus) and its host (Zestosphaera tikiterensis gen. nov., sp. nov.) from a New Zealand hot spring
journal, January 2019


A pentose bisphosphate pathway for nucleoside degradation in Archaea
journal, March 2015

  • Aono, Riku; Sato, Takaaki; Imanaka, Tadayuki
  • Nature Chemical Biology, Vol. 11, Issue 5
  • DOI: 10.1038/nchembio.1786

Yellowstone Lake Nanoarchaeota
journal, January 2013


The cytochrome bd respiratory oxygen reductases
journal, November 2011

  • Borisov, Vitaliy B.; Gennis, Robert B.; Hemp, James
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1807, Issue 11
  • DOI: 10.1016/j.bbabio.2011.06.016

Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot Springs
journal, September 2015

  • Munson-McGee, Jacob H.; Field, Erin K.; Bateson, Mary
  • Applied and Environmental Microbiology, Vol. 81, Issue 22
  • DOI: 10.1128/AEM.01539-15

The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism
journal, October 2003

  • Waters, E.; Hohn, M. J.; Ahel, I.
  • Proceedings of the National Academy of Sciences, Vol. 100, Issue 22
  • DOI: 10.1073/pnas.1735403100

Structural Basis for a Unique ATP Synthase Core Complex from Nanoarcheaum equitans
journal, September 2015

  • Mohanty, Soumya; Jobichen, Chacko; Chichili, Vishnu Priyanka Reddy
  • Journal of Biological Chemistry, Vol. 290, Issue 45
  • DOI: 10.1074/jbc.M115.677492

Phosphoenolpyruvate synthase plays an essential role for glycolysis in the modified Embden-Meyerhof pathway in Thermococcus kodakarensis
journal, August 2006


Colonization of nascent, deep-sea hydrothermal vents by a novel Archaeal and Nanoarchaeal assemblage
journal, January 2006


CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
journal, May 2015

  • Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T.
  • Genome Research, Vol. 25, Issue 7
  • DOI: 10.1101/gr.186072.114

Reductive genome evolution in Buchnera aphidicola
journal, January 2003

  • van Ham, R. C. H. J.; Kamerbeek, J.; Palacios, C.
  • Proceedings of the National Academy of Sciences, Vol. 100, Issue 2
  • DOI: 10.1073/pnas.0235981100

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations
journal, September 2018

  • Castelle, Cindy J.; Brown, Christopher T.; Anantharaman, Karthik
  • Nature Reviews Microbiology, Vol. 16, Issue 10
  • DOI: 10.1038/s41579-018-0076-2

Detection of 16S rDNA Sequences Representing the Novel Phylum “Nanoarchaeota”: Indication for a Wide Distribution in High Temperature Biotopes
journal, January 2002

  • Hohn, Michael J.; Hedlund, Brian P.; Huber, Harald
  • Systematic and Applied Microbiology, Vol. 25, Issue 4
  • DOI: 10.1078/07232020260517698

A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
journal, May 2002

  • Huber, Harald; Hohn, Michael J.; Rachel, Reinhard
  • Nature, Vol. 417, Issue 6884
  • DOI: 10.1038/417063a

Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents
journal, October 2017


The archaellum: how archaea swim
journal, January 2015


Anvi’o: an advanced analysis and visualization platform for ‘omics data
journal, January 2015

  • Eren, A. Murat; Esen, Özcan C.; Quince, Christopher
  • PeerJ, Vol. 3
  • DOI: 10.7717/peerj.1319