Genomic Epidemiology of Gonococcal Resistance to Extended-Spectrum Cephalosporins, Macrolides, and Fluoroquinolones in the United States, 2000–2013
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journal
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September 2016 |
KMC 2: fast and resource-frugal k-mer counting
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journal
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January 2015 |
Quinolone resistance-determining region in the DNA gyrase gyrA gene of Escherichia coli.
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journal
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June 1990 |
Antimicrobial Susceptibility Testing: A Review of General Principles and Contemporary Practices
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journal
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December 2009 |
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
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journal
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January 2013 |
Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae
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journal
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January 2018 |
The Use of Machine Learning Methodologies to Analyse Antibiotic and Biocide Susceptibility in Staphylococcus aureus
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journal
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February 2013 |
Quinolone-resistant mutations of the gyrA gene of Escherichia coli
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journal
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January 1988 |
Epidemiology, Clinical Presentation, Laboratory Diagnosis, Antimicrobial Resistance, and Antimicrobial Management of Invasive Salmonella Infections
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journal
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July 2015 |
PATRIC as a unique resource for studying antimicrobial resistance
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journal
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July 2017 |
Rapid Identification and Antibiotic Susceptibility Testing of Salmonella enterica Serovar Typhi Isolated from Blood: Implications for Therapy
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journal
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October 2001 |
Modal Codon Usage: Assessing the Typical Codon Usage of a Genome
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journal
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December 2009 |
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
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journal
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November 2016 |
Comparison of Typing Methods with a New Procedure Based on Sequence Characterization for Salmonella Serovar Prediction
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journal
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April 2013 |
Genomic sequencing of Neisseria gonorrhoeae to respond to the urgent threat of antimicrobial-resistant gonorrhea
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journal
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April 2017 |
Salmonella enterica : Survival, Colonization, and Virulence Differences among Serovars
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journal
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January 2015 |
Hospitalization and Antimicrobial Resistance in Salmonella Outbreaks, 1984–2002
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journal
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June 2005 |
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
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journal
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October 2006 |
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
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journal
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March 2010 |
Making the Leap from Research Laboratory to Clinic: Challenges and Opportunities for Next-Generation Sequencing in Infectious Disease Diagnostics
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journal
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December 2015 |
XGBoost: A Scalable Tree Boosting System
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conference
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January 2016 |
Blood culture-based diagnosis of bacteraemia: state of the art
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journal
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April 2015 |
Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons
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journal
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September 2016 |
Clinical Outcomes of Nalidixic Acid, Ceftriaxone, and Multidrug-Resistant Nontyphoidal Salmonella Infections Compared with Pansusceptible Infections in FoodNet Sites, 2006–2008
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journal
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May 2014 |
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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journal
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January 2013 |
WebLogo: A Sequence Logo Generator
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journal
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May 2004 |
Antimicrobial Resistance Prediction in PATRIC and RAST
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journal
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June 2016 |
Characterizing the Native Codon Usages of a Genome: An Axis Projection Approach
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journal
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August 2010 |
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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journal
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May 2012 |
A Common Mechanism of Cellular Death Induced by Bactericidal Antibiotics
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journal
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September 2007 |
On the Surprising Behavior of Distance Metrics in High Dimensional Space
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book
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January 2001 |
Effect of Antibiotic Therapy in Acute Salmonellosis on the Fecal Excretion of Salmonellae
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journal
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September 1969 |
Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
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journal
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May 2013 |
Understanding Machine Learning
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book
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July 2014 |
Evaluation of Machine Learning and Rules-Based Approaches for Predicting Antimicrobial Resistance Profiles in Gram-negative Bacilli from Whole Genome Sequence Data
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journal
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November 2016 |
Antimicrobial resistance: risk associated with antibiotic overuse and initiatives to reduce the problem
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journal
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September 2014 |
WGS to predict antibiotic MICs for Neisseria gonorrhoeae
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journal
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March 2017 |
Genomic analyses of Neisseria gonorrhoeae reveal an association of the gonococcal genetic island with antimicrobial resistance
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journal
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December 2016 |
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
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journal
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October 2017 |
BLAST+: architecture and applications
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journal
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January 2009 |
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
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journal
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February 2015 |
Antimicrobial resistance surveillance in the genomic age: AMR surveillance in the genomic age
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journal
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November 2016 |
Antimicrobial‐Resistant Nontyphoidal Salmonella Is Associated with Excess Bloodstream Infections and Hospitalizations
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journal
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February 2005 |
Clinical and microbiological implications of time-to-positivity of blood cultures in patients with Gram-negative bacilli bacteremia
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journal
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February 2013 |
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
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journal
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December 2015 |
Establishing Genotypic Cutoff Values To Measure Antimicrobial Resistance in Salmonella
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journal
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December 2016 |
Human Health Consequences of Antimicrobial Drug--Resistant Salmonella and Other Foodborne Pathogens
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journal
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December 2005 |
National Antimicrobial Resistance Monitoring System: Two Decades of Advancing Public Health Through Integrated Surveillance of Antimicrobial Resistance
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journal
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October 2017 |
Oxidation of the Guanine Nucleotide Pool Underlies Cell Death by Bactericidal Antibiotics
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journal
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April 2012 |
Transforming clinical microbiology with bacterial genome sequencing
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journal
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August 2012 |
Jalview Version 2--a multiple sequence alignment editor and analysis workbench
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journal
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January 2009 |
Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences
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journal
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April 2014 |
Duration of hypotension before initiation of effective antimicrobial therapy is the critical determinant of survival in human septic shock*
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journal
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January 2006 |
Using whole genome sequencing to identify resistance determinants and predict antimicrobial resistance phenotypes for year 2015 invasive pneumococcal disease isolates recovered in the United States
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journal
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December 2016 |
Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella
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journal
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July 2016 |
A molecular trigger for intercontinental epidemics of group A Streptococcus
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journal
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August 2015 |
Machine learning for the prediction of antibacterial susceptibility in Mycobacterium tuberculosis
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conference
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June 2014 |
Selection criteria for an antimicrobial susceptibility testing system.
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journal
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January 1993 |
Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
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journal
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March 2021 |
Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander
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journal
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April 2020 |
Why does the Aβ peptide of Alzheimer share structural similarity with antimicrobial peptides?
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journal
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March 2020 |
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads.
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text
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January 2017 |
BayesHammer: Bayesian clustering for error correction in single-cell sequencing
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text
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January 2012 |
KMC 2: Fast and resource-frugal $k$-mer counting
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text
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January 2014 |