A New Calmodulin-Binding Protein Expresses in the Context of Secondary Cell Wall Biosynthesis and Impacts Biomass Properties in Populus
Abstract
A greater understanding of biosynthesis, signaling and regulatory pathways involved in determining stem growth and secondary cell wall chemistry is important for enabling pathway engineering and genetic optimization of biomass properties. The present study describes a new functional role of PdIQD10, a Populus gene belonging to the IQ67-Domain1 family of IQD genes, in impacting biomass formation and chemistry. Expression studies showed that PdIQD10 has enhanced expression in developing xylem and tension-stressed tissues in Populus deltoides. Molecular dynamics simulation and yeast two-hybrid interaction experiments suggest interactions with two calmodulin proteins, CaM247 and CaM014, supporting the sequence-predicted functional role of the PdIQD10 as a calmodulin-binding protein. PdIQD10 was found to interact with specific Populus isoforms of the Kinesin Light Chain protein family, shown previously to function as microtubule-guided, cargo binding and delivery proteins in Arabidopsis. Subcellular localization studies showed that PdIQD10 localizes in the nucleus and plasma membrane regions. Promoter-binding assays suggest that a known master transcriptional regulator of secondary cell wall biosynthesis (PdWND1B) may be upstream of an HD-ZIP III gene that is in turn upstream of PdIQD10 gene in the transcriptional network. RNAi-mediated downregulation of PdIQD10 expression resulted in plants with altered biomass properties including higher cellulose, wall glucose contentmore »
- Authors:
-
[7];
[7];
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Norsk Institutt for Biookonomi, As (Norway)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Georgia Inst. of Technology, Atlanta, GA (United States)
- The Univ. of Tennessee, Knoxville, TN (United States); Norsk Institutt for Biookonomi, As (Norway)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- ArborGen Inc., Ridgeville, SC (United States)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); National Renewable Energy Lab. (NREL), Golden, CO (United States); Norsk Institutt for Biookonomi, As (Norway)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); National Renewable Energy Lab. (NREL), Golden, CO (United States)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); The Univ. of Tennessee, Knoxville, TN (United States)
- Publication Date:
- Research Org.:
- National Renewable Energy Laboratory (NREL), Golden, CO (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1490993
- Alternate Identifier(s):
- OSTI ID: 1542250
- Report Number(s):
- NREL/JA-2700-70612
Journal ID: ISSN 1664-462X
- Grant/Contract Number:
- AC36-08GO28308; AC05-00OR22725
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Plant Science
- Additional Journal Information:
- Journal Volume: 9; Journal ID: ISSN 1664-462X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 09 BIOMASS FUELS; secondary cell wall; cellulose; signaling; kinesin; calcium-calmodulin; biomass; IQD; Populus
Citation Formats
Badmi, Raghuram, Payyavula, Raja S., Bali, Garima, Guo, Hao -Bo, Jawdy, Sara S., Gunter, Lee E., Yang, Xiaohan, Winkeler, Kimberly A., Collins, Cassandra, Rottmann, William H., Yee, Kelsey, Rodriguez, Jr., Miguel, Sykes, Robert W., Decker, Stephen R., Davis, Mark F., Ragauskas, Arthur J., Tuskan, Gerald A., and Kalluri, Udaya C. A New Calmodulin-Binding Protein Expresses in the Context of Secondary Cell Wall Biosynthesis and Impacts Biomass Properties in Populus. United States: N. p., 2018.
Web. doi:10.3389/fpls.2018.01669.
Badmi, Raghuram, Payyavula, Raja S., Bali, Garima, Guo, Hao -Bo, Jawdy, Sara S., Gunter, Lee E., Yang, Xiaohan, Winkeler, Kimberly A., Collins, Cassandra, Rottmann, William H., Yee, Kelsey, Rodriguez, Jr., Miguel, Sykes, Robert W., Decker, Stephen R., Davis, Mark F., Ragauskas, Arthur J., Tuskan, Gerald A., & Kalluri, Udaya C. A New Calmodulin-Binding Protein Expresses in the Context of Secondary Cell Wall Biosynthesis and Impacts Biomass Properties in Populus. United States. https://doi.org/10.3389/fpls.2018.01669
Badmi, Raghuram, Payyavula, Raja S., Bali, Garima, Guo, Hao -Bo, Jawdy, Sara S., Gunter, Lee E., Yang, Xiaohan, Winkeler, Kimberly A., Collins, Cassandra, Rottmann, William H., Yee, Kelsey, Rodriguez, Jr., Miguel, Sykes, Robert W., Decker, Stephen R., Davis, Mark F., Ragauskas, Arthur J., Tuskan, Gerald A., and Kalluri, Udaya C. Wed .
"A New Calmodulin-Binding Protein Expresses in the Context of Secondary Cell Wall Biosynthesis and Impacts Biomass Properties in Populus". United States. https://doi.org/10.3389/fpls.2018.01669. https://www.osti.gov/servlets/purl/1490993.
@article{osti_1490993,
title = {A New Calmodulin-Binding Protein Expresses in the Context of Secondary Cell Wall Biosynthesis and Impacts Biomass Properties in Populus},
author = {Badmi, Raghuram and Payyavula, Raja S. and Bali, Garima and Guo, Hao -Bo and Jawdy, Sara S. and Gunter, Lee E. and Yang, Xiaohan and Winkeler, Kimberly A. and Collins, Cassandra and Rottmann, William H. and Yee, Kelsey and Rodriguez, Jr., Miguel and Sykes, Robert W. and Decker, Stephen R. and Davis, Mark F. and Ragauskas, Arthur J. and Tuskan, Gerald A. and Kalluri, Udaya C.},
abstractNote = {A greater understanding of biosynthesis, signaling and regulatory pathways involved in determining stem growth and secondary cell wall chemistry is important for enabling pathway engineering and genetic optimization of biomass properties. The present study describes a new functional role of PdIQD10, a Populus gene belonging to the IQ67-Domain1 family of IQD genes, in impacting biomass formation and chemistry. Expression studies showed that PdIQD10 has enhanced expression in developing xylem and tension-stressed tissues in Populus deltoides. Molecular dynamics simulation and yeast two-hybrid interaction experiments suggest interactions with two calmodulin proteins, CaM247 and CaM014, supporting the sequence-predicted functional role of the PdIQD10 as a calmodulin-binding protein. PdIQD10 was found to interact with specific Populus isoforms of the Kinesin Light Chain protein family, shown previously to function as microtubule-guided, cargo binding and delivery proteins in Arabidopsis. Subcellular localization studies showed that PdIQD10 localizes in the nucleus and plasma membrane regions. Promoter-binding assays suggest that a known master transcriptional regulator of secondary cell wall biosynthesis (PdWND1B) may be upstream of an HD-ZIP III gene that is in turn upstream of PdIQD10 gene in the transcriptional network. RNAi-mediated downregulation of PdIQD10 expression resulted in plants with altered biomass properties including higher cellulose, wall glucose content and greater biomass quantity. These results present evidence in support of a new functional role for an IQD gene family member, PdIQD10, in secondary cell wall biosynthesis and biomass formation in Populus.},
doi = {10.3389/fpls.2018.01669},
journal = {Frontiers in Plant Science},
number = ,
volume = 9,
place = {United States},
year = {Wed Dec 05 00:00:00 EST 2018},
month = {Wed Dec 05 00:00:00 EST 2018}
}
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Works referencing / citing this record:
Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
journal, October 2019
- Furches, Anna; Kainer, David; Weighill, Deborah
- Frontiers in Plant Science, Vol. 10