Seascape genomics of eastern oyster ( Crassostrea virginica ) along the Atlantic coast of Canada
Abstract
Abstract Interactions between environmental factors and complex life‐history characteristics of marine organisms produce the genetic diversity and structure observed within species. Our main goal was to test for genetic differentiation among eastern oyster populations from the coastal region of Canadian Maritimes against expected genetic homogeneity caused by historical events, taking into account spatial and environmental (temperature, salinity, turbidity) variation. This was achieved by genotyping 486 individuals originating from 13 locations using RADSeq. A total of 11,321 filtered SNPs were used in a combination of population genomics and environmental association analyses. We revealed significant neutral genetic differentiation (mean F ST = 0.009) between sampling locations, and the occurrence of six major genetic clusters within the studied system. Redundancy analyses (RDAs) revealed that spatial and environmental variables explained 3.1% and 4.9% of the neutral genetic variation and 38.6% and 12.2% of the putatively adaptive genetic variation, respectively. These results indicate that these environmental factors play a role in the distribution of both neutral and putatively adaptive genetic diversity in the system. Moreover, polygenic selection was suggested by genotype–environment association analysis and significant correlations between additive polygenic scores and temperature and salinity. We discuss our results in the context of their conservation and managementmore »
- Authors:
-
[1];
[2];
[3];
[3];
- Institut de Biologie Intégrative et des Systèmes (IBIS) Université Laval Québec Québec Canada, Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario Canada, Fisheries and Oceans Canada Moncton New Brunswick Canada, L’Étang Ruisseau Bar Ltd. Shippagan New Brunswick Canada
- Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS) Université Laval Québec Québec Canada
- Fisheries and Oceans Canada Moncton New Brunswick Canada
- L’Étang Ruisseau Bar Ltd. Shippagan New Brunswick Canada
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1488871
- Alternate Identifier(s):
- OSTI ID: 1488873
- Resource Type:
- Published Article
- Journal Name:
- Evolutionary Applications
- Additional Journal Information:
- Journal Name: Evolutionary Applications Journal Volume: 12 Journal Issue: 3; Journal ID: ISSN 1752-4571
- Publisher:
- Wiley-Blackwell
- Country of Publication:
- United Kingdom
- Language:
- English
Citation Formats
Bernatchez, Simon, Xuereb, Amanda, Laporte, Martin, Benestan, Laura, Steeves, Royce, Laflamme, Mark, Bernatchez, Louis, and Mallet, Martin A. Seascape genomics of eastern oyster ( Crassostrea virginica ) along the Atlantic coast of Canada. United Kingdom: N. p., 2018.
Web. doi:10.1111/eva.12741.
Bernatchez, Simon, Xuereb, Amanda, Laporte, Martin, Benestan, Laura, Steeves, Royce, Laflamme, Mark, Bernatchez, Louis, & Mallet, Martin A. Seascape genomics of eastern oyster ( Crassostrea virginica ) along the Atlantic coast of Canada. United Kingdom. https://doi.org/10.1111/eva.12741
Bernatchez, Simon, Xuereb, Amanda, Laporte, Martin, Benestan, Laura, Steeves, Royce, Laflamme, Mark, Bernatchez, Louis, and Mallet, Martin A. Wed .
"Seascape genomics of eastern oyster ( Crassostrea virginica ) along the Atlantic coast of Canada". United Kingdom. https://doi.org/10.1111/eva.12741.
@article{osti_1488871,
title = {Seascape genomics of eastern oyster ( Crassostrea virginica ) along the Atlantic coast of Canada},
author = {Bernatchez, Simon and Xuereb, Amanda and Laporte, Martin and Benestan, Laura and Steeves, Royce and Laflamme, Mark and Bernatchez, Louis and Mallet, Martin A.},
abstractNote = {Abstract Interactions between environmental factors and complex life‐history characteristics of marine organisms produce the genetic diversity and structure observed within species. Our main goal was to test for genetic differentiation among eastern oyster populations from the coastal region of Canadian Maritimes against expected genetic homogeneity caused by historical events, taking into account spatial and environmental (temperature, salinity, turbidity) variation. This was achieved by genotyping 486 individuals originating from 13 locations using RADSeq. A total of 11,321 filtered SNPs were used in a combination of population genomics and environmental association analyses. We revealed significant neutral genetic differentiation (mean F ST = 0.009) between sampling locations, and the occurrence of six major genetic clusters within the studied system. Redundancy analyses (RDAs) revealed that spatial and environmental variables explained 3.1% and 4.9% of the neutral genetic variation and 38.6% and 12.2% of the putatively adaptive genetic variation, respectively. These results indicate that these environmental factors play a role in the distribution of both neutral and putatively adaptive genetic diversity in the system. Moreover, polygenic selection was suggested by genotype–environment association analysis and significant correlations between additive polygenic scores and temperature and salinity. We discuss our results in the context of their conservation and management implications for the eastern oyster.},
doi = {10.1111/eva.12741},
journal = {Evolutionary Applications},
number = 3,
volume = 12,
place = {United Kingdom},
year = {2018},
month = {12}
}
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