Comparative genomics and physiology of the genus Methanohalophilus , a prevalent methanogen in hydraulically fractured shale
- Authors:
-
- Soil and Crop Sciences, Colorado State UniversityFort CollinsCOUSA
- Department of MicrobiologyUniversity of TennesseeKnoxvilleTNUSA
- EMSL, Pacific Northwest National LabRichlandWAUSA
- Depatment of MicrobiologyThe Ohio State UniversityColumbusOHUSA
- School of Earth SciencesThe Ohio State UniversityColumbusOHUSA
- Molecular and Cellular Imaging Center, The Ohio State University Wooster OH USA
- Department of Geology and Geography West Virginia University Morgantown WV USA
- DowDuPont Industrial Biosciences Wilmington DE USA
- Publication Date:
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1485703
- Grant/Contract Number:
- DE‐AC02‐05CH11231
- Resource Type:
- Publisher's Accepted Manuscript
- Journal Name:
- Environmental Microbiology
- Additional Journal Information:
- Journal Name: Environmental Microbiology Journal Volume: 20 Journal Issue: 12; Journal ID: ISSN 1462-2912
- Publisher:
- Wiley-Blackwell
- Country of Publication:
- United Kingdom
- Language:
- English
Citation Formats
Borton, Mikayla A., Daly, Rebecca A., O'Banion, Bridget, Hoyt, David W., Marcus, Daniel N., Welch, Susan, Hastings, Sybille S., Meulia, Tea, Wolfe, Richard A., Booker, Anne E., Sharma, Shikha, Cole, David R., Wunch, Kenneth, Moore, Joseph D., Darrah, Thomas H., Wilkins, Michael J., and Wrighton, Kelly C. Comparative genomics and physiology of the genus Methanohalophilus , a prevalent methanogen in hydraulically fractured shale. United Kingdom: N. p., 2018.
Web. doi:10.1111/1462-2920.14467.
Borton, Mikayla A., Daly, Rebecca A., O'Banion, Bridget, Hoyt, David W., Marcus, Daniel N., Welch, Susan, Hastings, Sybille S., Meulia, Tea, Wolfe, Richard A., Booker, Anne E., Sharma, Shikha, Cole, David R., Wunch, Kenneth, Moore, Joseph D., Darrah, Thomas H., Wilkins, Michael J., & Wrighton, Kelly C. Comparative genomics and physiology of the genus Methanohalophilus , a prevalent methanogen in hydraulically fractured shale. United Kingdom. https://doi.org/10.1111/1462-2920.14467
Borton, Mikayla A., Daly, Rebecca A., O'Banion, Bridget, Hoyt, David W., Marcus, Daniel N., Welch, Susan, Hastings, Sybille S., Meulia, Tea, Wolfe, Richard A., Booker, Anne E., Sharma, Shikha, Cole, David R., Wunch, Kenneth, Moore, Joseph D., Darrah, Thomas H., Wilkins, Michael J., and Wrighton, Kelly C. Thu .
"Comparative genomics and physiology of the genus Methanohalophilus , a prevalent methanogen in hydraulically fractured shale". United Kingdom. https://doi.org/10.1111/1462-2920.14467.
@article{osti_1485703,
title = {Comparative genomics and physiology of the genus Methanohalophilus , a prevalent methanogen in hydraulically fractured shale},
author = {Borton, Mikayla A. and Daly, Rebecca A. and O'Banion, Bridget and Hoyt, David W. and Marcus, Daniel N. and Welch, Susan and Hastings, Sybille S. and Meulia, Tea and Wolfe, Richard A. and Booker, Anne E. and Sharma, Shikha and Cole, David R. and Wunch, Kenneth and Moore, Joseph D. and Darrah, Thomas H. and Wilkins, Michael J. and Wrighton, Kelly C.},
abstractNote = {},
doi = {10.1111/1462-2920.14467},
journal = {Environmental Microbiology},
number = 12,
volume = 20,
place = {United Kingdom},
year = {2018},
month = {12}
}
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1111/1462-2920.14467
https://doi.org/10.1111/1462-2920.14467
Other availability
Cited by: 20 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
An updated evolutionary classification of CRISPR–Cas systems
journal, September 2015
- Makarova, Kira S.; Wolf, Yuri I.; Alkhnbashi, Omer S.
- Nature Reviews Microbiology, Vol. 13, Issue 11, p. 722-736
High abundance and expression of transposases in bacteria from the Baltic Sea
journal, July 2017
- Vigil-Stenman, Theoden; Ininbergs, Karolina; Bergman, Birgitta
- The ISME Journal, Vol. 11, Issue 11
Anvi’o: an advanced analysis and visualization platform for ‘omics data
journal, January 2015
- Eren, A. Murat; Esen, Özcan C.; Quince, Christopher
- PeerJ, Vol. 3
New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11
journal, December 2016
- Solden, Lindsey M.; Hoyt, David W.; Collins, William B.
- The ISME Journal, Vol. 11, Issue 3
Bioenergetic Aspects of Halophilism
journal, June 1999
- Oren, Aharon
- Microbiology and Molecular Biology Reviews, Vol. 63, Issue 2
The Genome Sequence of Methanohalophilus mahii SLP T Reveals Differences in the Energy Metabolism among Members of the Methanosarcinaceae Inhabiting Freshwater and Saline Environments
journal, January 2010
- Spring, Stefan; Scheuner, Carmen; Lapidus, Alla
- Archaea, Vol. 2010
Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
journal, February 2012
- Wu, Martin; Scott, Alexandra J.
- Bioinformatics, Vol. 28, Issue 7
Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Methanohalophilus portucalensis Strain FDF-1 T
journal, January 2018
- L’Haridon, Stéphane; Corre, Erwan; Guan, Yue
- Genome Announcements, Vol. 6, Issue 3
Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks
journal, January 2015
- Langdon, W. B.
- BioData Mining, Vol. 8, Issue 1
The CRISPR-associated Csx1 protein of Pyrococcus furiosus is an adenosine-specific endoribonuclease
journal, December 2015
- Sheppard, Nolan F.; Glover, Claiborne V. C.; Terns, Rebecca M.
- RNA, Vol. 22, Issue 2
A Critical Review of the Risks to Water Resources from Unconventional Shale Gas Development and Hydraulic Fracturing in the United States
journal, March 2014
- Vengosh, Avner; Jackson, Robert B.; Warner, Nathaniel
- Environmental Science & Technology, Vol. 48, Issue 15
InterProScan: protein domains identifier
journal, July 2005
- Quevillon, E.; Silventoinen, V.; Pillai, S.
- Nucleic Acids Research, Vol. 33, Issue Web Server
Molecular recordings by directed CRISPR spacer acquisition
journal, June 2016
- Shipman, Seth L.; Nivala, Jeff; Macklis, Jeffrey D.
- Science, Vol. 353, Issue 6298
A Three-Component Microbial Consortium from Deep-Sea Salt-Saturated Anoxic Lake Thetis Links Anaerobic Glycine Betaine Degradation with Methanogenesis
journal, September 2015
- Cono, Violetta; Arcadi, Erika; Spada, Gina
- Microorganisms, Vol. 3, Issue 3
Gene and translation initiation site prediction in metagenomic sequences
journal, July 2012
- Hyatt, Doug; LoCascio, Philip F.; Hauser, Loren J.
- Bioinformatics, Vol. 28, Issue 17
Metagenomic Analysis of the Human Distal Gut Microbiome
journal, June 2006
- Gill, S. R.; Pop, M.; DeBoy, R. T.
- Science, Vol. 312, Issue 5778
Review and re-analysis of domain-specific 16S primers
journal, December 2003
- Baker, G. C.; Smith, J. J.; Cowan, D. A.
- Journal of Microbiological Methods, Vol. 55, Issue 3
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR.
journal, January 1996
- Suzuki, M. T.; Giovannoni, S. J.
- Applied and environmental microbiology, Vol. 62, Issue 2
Bacterial Communities Associated with Production Facilities of Two Newly Drilled Thermogenic Natural Gas Wells in the Barnett Shale (Texas, USA)
journal, May 2012
- Davis, James P.; Struchtemeyer, Christopher G.; Elshahed, Mostafa S.
- Microbial Ecology, Vol. 64, Issue 4
Microbial communities evolve faster in extreme environments
journal, August 2014
- Li, Sheng-Jin; Hua, Zheng-Shuang; Huang, Li-Nan
- Scientific Reports, Vol. 4, Issue 1
Microbial communities in flowback water impoundments from hydraulic fracturing for recovery of shale gas
journal, August 2013
- Murali Mohan, Arvind; Hartsock, Angela; Hammack, Richard W.
- FEMS Microbiology Ecology, Vol. 86, Issue 3
Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales
journal, September 2016
- Daly, Rebecca A.; Borton, Mikayla A.; Wilkins, Michael J.
- Nature Microbiology, Vol. 1, Issue 10
A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase
journal, October 2014
- Ticak, T.; Kountz, D. J.; Girosky, K. E.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 43
Natural Gas From Shale Bursts Onto the Scene
journal, June 2010
- Kerr, R. A.
- Science, Vol. 328, Issue 5986, p. 1624-1626
Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions
journal, November 2017
- Angle, Jordan C.; Morin, Timothy H.; Solden, Lindsey M.
- Nature Communications, Vol. 8, Issue 1
From complete genome sequence to ‘complete’ understanding?
journal, August 2010
- Galperin, Michael Y.; Koonin, Eugene V.
- Trends in Biotechnology, Vol. 28, Issue 8
Prochlorococcus: the structure and function of collective diversity
journal, December 2014
- Biller, Steven J.; Berube, Paul M.; Lindell, Debbie
- Nature Reviews Microbiology, Vol. 13, Issue 1
Natural Gas Plays in the Marcellus Shale: Challenges and Potential Opportunities
journal, August 2010
- Kargbo, David M.; Wilhelm, Ron G.; Campbell, David J.
- Environmental Science & Technology, Vol. 44, Issue 15, p. 5679-5684
Evidence for extensive gene flow and Thermotoga subpopulations in subsurface and marine environments
journal, December 2014
- Nesbø, Camilla L.; S. Swithers, Kristen; Dahle, Håkon
- The ISME Journal, Vol. 9, Issue 7
Marine Black Shales: Depositional Mechanisms and Environments of Ancient Deposits
journal, May 1994
- Arthur, M. A.; Sageman, B. B.
- Annual Review of Earth and Planetary Sciences, Vol. 22, Issue 1
Type and amount of organic amendments affect enhanced biogenic methane production from coal and microbial community structure
journal, January 2018
- Davis, Katherine J.; Lu, Shipeng; Barnhart, Elliott P.
- Fuel, Vol. 211
Methanohalophilus levihalophilus sp. nov., a slightly halophilic, methylotrophic methanogen isolated from natural gas-bearing deep aquifers, and emended description of the genus Methanohalophilus
journal, March 2014
- Katayama, T.; Yoshioka, H.; Mochimaru, H.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 6
Exploring and Understanding the Biochemical Diversity of the Human Microbiota
journal, January 2016
- Koppel, Nitzan; Balskus, Emily P.
- Cell Chemical Biology, Vol. 23, Issue 1
Draft Genome Sequences of Multiple Frackibacter Strains Isolated from Hydraulically Fractured Shale Environments
journal, August 2017
- Booker, Anne E.; Johnston, Michael D.; Daly, Rebecca A.
- Genome Announcements, Vol. 5, Issue 32
Methanogenic Archaea in Marcellus Shale: A Possible Mechanism for Enhanced Gas Recovery in Unconventional Shale Resources
journal, May 2015
- Tucker, Yael Tarlovsky; Kotcon, James; Mroz, Thomas
- Environmental Science & Technology, Vol. 49, Issue 11
Draft Genome Sequence of Methanohalophilus mahii Strain DAL1 Reconstructed from a Hydraulic Fracturing-Produced Water Metagenome
journal, September 2016
- Lipus, Daniel; Vikram, Amit; Ross, Daniel E.
- Genome Announcements, Vol. 4, Issue 5
Enhanced microbial coalbed methane generation: A review of research, commercial activity, and remaining challenges
journal, July 2015
- Ritter, Daniel; Vinson, David; Barnhart, Elliott
- International Journal of Coal Geology, Vol. 146
Influence of the Drilling Mud Formulation Process on the Bacterial Communities in Thermogenic Natural Gas Wells of the Barnett Shale
journal, May 2011
- Struchtemeyer, Christopher G.; Davis, James P.; Elshahed, Mostafa S.
- Applied and Environmental Microbiology, Vol. 77, Issue 14
Salinity Constraints on Subsurface Archaeal Diversity and Methanogenesis in Sedimentary Rock Rich in Organic Matter
journal, April 2007
- Waldron, P. J.; Petsch, S. T.; Martini, A. M.
- Applied and Environmental Microbiology, Vol. 73, Issue 13
Temporal Changes in Microbial Ecology and Geochemistry in Produced Water from Hydraulically Fractured Marcellus Shale Gas Wells
journal, May 2014
- Cluff, Maryam A.; Hartsock, Angela; MacRae, Jean D.
- Environmental Science & Technology, Vol. 48, Issue 11
Search and clustering orders of magnitude faster than BLAST
journal, August 2010
- Edgar, Robert C.
- Bioinformatics, Vol. 26, Issue 19, p. 2460-2461
The evolution of Devonian hydrocarbon gases in shallow aquifers of the northern Appalachian Basin: Insights from integrating noble gas and hydrocarbon geochemistry
journal, December 2015
- Darrah, Thomas H.; Jackson, Robert B.; Vengosh, Avner
- Geochimica et Cosmochimica Acta, Vol. 170
Produced Water Exposure Alters Bacterial Response to Biocides
journal, October 2014
- Vikram, Amit; Lipus, Daniel; Bibby, Kyle
- Environmental Science & Technology, Vol. 48, Issue 21
The biofilm matrix
journal, August 2010
- Flemming, Hans-Curt; Wingender, Jost
- Nature Reviews Microbiology, Vol. 8, Issue 9
Hydraulic fracturing offers view of microbial life in the deep terrestrial subsurface
journal, August 2016
- Mouser, Paula J.; Borton, Mikayla; Darrah, Thomas H.
- FEMS Microbiology Ecology, Vol. 92, Issue 11
High-resolution phylogenetic microbial community profiling
journal, February 2016
- Singer, Esther; Bushnell, Brian; Coleman-Derr, Devin
- The ISME Journal, Vol. 10, Issue 8
Nasty Viruses, Costly Plasmids, Population Dynamics, and the Conditions for Establishing and Maintaining CRISPR-Mediated Adaptive Immunity in Bacteria
journal, October 2010
- Levin, Bruce R.
- PLoS Genetics, Vol. 6, Issue 10
Joint sets that enhance production from Middle and Upper Devonian gas shales of the Appalachian Basin
journal, July 2009
- Engelder, Terry; Lash, Gary G.; Uzcátegui, Redescal S.
- AAPG Bulletin, Vol. 93, Issue 7
The experimental evolution of specialists, generalists, and the maintenance of diversity: Experimental evolution in variable environments
journal, March 2002
- Kassen, R.
- Journal of Evolutionary Biology, Vol. 15, Issue 2
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
journal, January 2018
- Delmont, Tom O.; Eren, A. Murat
- PeerJ, Vol. 6
Microbial diversity and methanogenic activity of Antrim Shale formation waters from recently fractured wells
journal, January 2013
- Wuchter, Cornelia; Banning, Erin; Mincer, Tracy J.
- Frontiers in Microbiology, Vol. 4
ITEP: An integrated toolkit for exploration of microbial pan-genomes
journal, January 2014
- Benedict, Matthew N.; Henriksen, James R.; Metcalf, William W.
- BMC Genomics, Vol. 15, Issue 1
Microbial Community Changes in Hydraulic Fracturing Fluids and Produced Water from Shale Gas Extraction
journal, October 2013
- Murali Mohan, Arvind; Hartsock, Angela; Bibby, Kyle J.
- Environmental Science & Technology, Vol. 47, Issue 22
Preferential jointing of Upper Devonian black shale, Appalachian Plateau, USA: evidence supporting hydrocarbon generation as a joint-driving mechanism
journal, January 2004
- Lash, Gary; Loewy, Staci; Engelder, Terry
- Geological Society, London, Special Publications, Vol. 231, Issue 1
Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
journal, June 2018
- Borton, Mikayla A.; Hoyt, David W.; Roux, Simon
- Proceedings of the National Academy of Sciences, Vol. 115, Issue 28
Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales
journal, July 2017
- Booker, Anne E.; Borton, Mikayla A.; Daly, Rebecca A.
- mSphere, Vol. 2, Issue 4
Differentiating between biogenic and thermogenic sources of natural gas in coalbed methane reservoirs from the Illinois Basin using noble gas and hydrocarbon geochemistry
journal, January 2018
- Moore, Myles T.; Vinson, David S.; Whyte, Colin J.
- Geological Society, London, Special Publications, Vol. 468, Issue 1
Activation of Methanogenesis in Arid Biological Soil Crusts Despite the Presence of Oxygen
journal, May 2011
- Angel, Roey; Matthies, Diethart; Conrad, Ralf
- PLoS ONE, Vol. 6, Issue 5
Biogenic methane production from coal: A review on recent research and development on microbially enhanced coalbed methane (MECBM)
journal, February 2016
- Park, Stephen Y.; Liang, Yanna
- Fuel, Vol. 166
Basic local alignment search tool
journal, October 1990
- Altschul, Stephen F.; Gish, Warren; Miller, Webb
- Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410
Quantitative Survey and Structural Classification of Hydraulic Fracturing Chemicals Reported in Unconventional Gas Production
journal, March 2016
- Elsner, Martin; Hoelzer, Kathrin
- Environmental Science & Technology, Vol. 50, Issue 7
New gas material balance to quantify biogenic gas generation rates from shallow organic-matter-rich shales
journal, February 2013
- Cokar, M.; Ford, B.; Kallos, M. S.
- Fuel, Vol. 104
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
journal, September 2017
- Parks, Donovan H.; Rinke, Christian; Chuvochina, Maria
- Nature Microbiology, Vol. 2, Issue 11
Organic and inorganic composition and microbiology of produced waters from Pennsylvania shale gas wells
journal, September 2015
- Akob, Denise M.; Cozzarelli, Isabelle M.; Dunlap, Darren S.
- Applied Geochemistry, Vol. 60
Metabolic Capability of a Predominant Halanaerobium sp. in Hydraulically Fractured Gas Wells and Its Implication in Pipeline Corrosion
journal, June 2016
- Liang, Renxing; Davidova, Irene A.; Marks, Christopher R.
- Frontiers in Microbiology, Vol. 7
Bacteria-Phage Antagonistic Coevolution in Soil
journal, March 2011
- Gomez, P.; Buckling, A.
- Science, Vol. 332, Issue 6025
Naturally Occurring versus Anthropogenic Sources of Elevated Molybdenum in Groundwater: Evidence for Geogenic Contamination from Southeast Wisconsin, United States
journal, October 2017
- Harkness, Jennifer S.; Darrah, Thomas H.; Moore, Myles T.
- Environmental Science & Technology, Vol. 51, Issue 21
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
journal, October 2015
- Henderson, Gemma; Cox, Faith; Ganesh, Siva
- Scientific Reports, Vol. 5, Issue 1
Fluids expelled tectonically from orogenic belts: Their role in hydrocarbon migration and other geologic phenomena
journal, January 1986
- Oliver, Jack
- Geology, Vol. 14, Issue 2
Nitrate reduction and the nitrogen cycle in archaea
journal, November 2004
- Cabello, P.
- Microbiology, Vol. 150, Issue 11
Glycine betaine and potassium ion are the major compatible solutes in the extremely halophilic methanogen Methanohalophilus strain Z7302.
journal, November 1992
- Lai, M. C.; Gunsalus, R. P.
- Journal of Bacteriology, Vol. 174, Issue 22
A tale of shales: the relative roles of production, decomposition, and dilution in the accumulation of organic-rich strata, Middle–Upper Devonian, Appalachian basin
journal, April 2003
- Sageman, Bradley B.; Murphy, Adam E.; Werne, Josef P.
- Chemical Geology, Vol. 195, Issue 1-4
Archaeal biofilm formation
journal, August 2018
- van Wolferen, Marleen; Orell, Alvaro; Albers, Sonja-Verena
- Nature Reviews Microbiology, Vol. 16, Issue 11