High Throughput Screening Technologies in Biomass Characterization

Decker, Stephen R.; Harman-Ware, Anne E.; Happs, Renee M.; Wolfrum, Edward J.; Tuskan, Gerald A.; Kainer, David; Oguntimein, Gbekeloluwa B.; Rodriguez, Miguel; Weighill, Deborah; Jones, Piet; Jacobson, Daniel

doi:10.3389/fenrg.2018.00120

Title: High Throughput Screening Technologies in Biomass Characterization

Journal Article · 26 November 2018 · Frontiers in Energy Research

DOI: https://doi.org/10.3389/fenrg.2018.00120 · OSTI ID:1483426

Decker, Stephen R.; Harman-Ware, Anne E.; Happs, Renee M.; Wolfrum, Edward J.; Tuskan, Gerald A.; Kainer, David; Oguntimein, Gbekeloluwa B.; Rodriguez, Miguel; Weighill, Deborah; Jones, Piet; Jacobson, Daniel

Not Available

View Journal Article

Cite

Export

Save

Research Organization:: National Renewable Energy Laboratory (NREL), Golden, CO (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF)

Sponsoring Organization:: DOE Office of Science; USDOE; USDOE Office of Energy Efficiency and Renewable Energy (EERE), Bioenergy Technologies Office (EE-3B); USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)

Grant/Contract Number:: AC02-05CH11231; AC05-00OR22725; AC36-08GO28308

OSTI ID:: 1483426

Report Number(s):: NREL/JA-2700-72729; 120

Journal Information:: Frontiers in Energy Research, Journal Name: Frontiers in Energy Research Vol. 6; ISSN 2296-598X

Publisher:: Frontiers Research FoundationCopyright Statement

Country of Publication:: Switzerland

Language:: English

References (105)

Rapid determination of sugar content in biomass hydrolysates using nuclear magnetic resonance spectroscopy Gjersing, Erica; Happs, Renee M.; Sykes, Robert W. Biotechnology and Bioengineering, Vol. 110, Issue 3 https://doi.org/10.1002/Bit.24741	journal	October 2012
A rapid microassay to evaluate enzymatic hydrolysis of lignocellulosic substrates Berlin, Alex; Maximenko, Vera; Bura, Renata Biotechnology and Bioengineering, Vol. 93, Issue 5 https://doi.org/10.1002/bit.20783	journal	January 2006
High-throughput microplate technique for enzymatic hydrolysis of lignocellulosic biomass Chundawat, Shishir P. S.; Balan, Venkatesh; Dale, Bruce E. Biotechnology and Bioengineering, Vol. 99, Issue 6 https://doi.org/10.1002/bit.21805	journal	January 2008
Engineering of a high-throughput screening system to identify cellulosic biomass, pretreatments, and enzyme formulations that enhance sugar release Studer, Michael H.; DeMartini, Jaclyn D.; Brethauer, Simone Biotechnology and Bioengineering, Vol. 105, Issue 2, p. 231-238 https://doi.org/10.1002/bit.22527	journal	February 2010
Small-scale and automatable high-throughput compositional analysis of biomass DeMartini, Jaclyn D.; Studer, Michael H.; Wyman, Charles E. Biotechnology and Bioengineering, Vol. 108, Issue 2, p. 306-312 https://doi.org/10.1002/bit.22937	journal	October 2010
High throughput automated microbial bioreactor system used for clone selection and rapid scale-down process optimization Velez-Suberbie, M. Lourdes; Betts, John P. J.; Walker, Kelly L. Biotechnology Progress, Vol. 34, Issue 1 https://doi.org/10.1002/btpr.2534	journal	August 2017
NIR hyperspectral imaging spectroscopy and chemometrics for the discrimination of roots and crop residues extracted from soil samples: Discrimination of roots and crop residues on hyperspectral images Eylenbosch, Damien; Bodson, Bernard; Baeten, Vincent Journal of Chemometrics, Vol. 32, Issue 1 https://doi.org/10.1002/cem.2982	journal	November 2017
Biomass properties from different Miscanthus species Liu, Chenchen; Xiao, Liang; Jiang, Jianxiong Food and Energy Security, Vol. 2, Issue 1 https://doi.org/10.1002/fes3.19	journal	May 2013
A Custom Correlation Coefficient (CCC) Approach for Fast Identification of Multi-SNP Association Patterns in Genome-Wide SNPs Data: Fast Identification of Multi-SNP Patterns in GWAS Climer, Sharlee; Yang, Wei; de las Fuentes, Lisa Genetic Epidemiology, Vol. 38, Issue 7 https://doi.org/10.1002/gepi.21833	journal	August 2014
NMR metabolomics and drug discovery Powers, Robert Magnetic Resonance in Chemistry, Vol. 47, Issue S1 https://doi.org/10.1002/mrc.2461	journal	June 2009
Determination of metabolite profiles in tropical wines by 1H NMR spectroscopy and chemometrics da Silva Neto, Humberto G.; da Silva, João B. P.; Pereira, Giuliano E. Magnetic Resonance in Chemistry, Vol. 47, Issue S1 https://doi.org/10.1002/mrc.2520	journal	October 2009
Mixture analysis by NMR as applied to fruit juice quality control Spraul, Manfred; Schütz, Birk; Humpfer, Eberhard Magnetic Resonance in Chemistry, Vol. 47, Issue S1 https://doi.org/10.1002/mrc.2528	journal	November 2009
Reducing the Effect of Variable Starch Levels in Biomass Recalcitrance Screening Decker, Stephen R.; Carlile, Melissa; Selig, Michael J. Biomass Conversion https://doi.org/10.1007/978-1-61779-956-3_17	book	January 2012
Strategy for choosing extraction procedures for NMR-based metabolomic analysis of mammalian cells Martineau, Estelle; Tea, Illa; Loaëc, Gregory Analytical and Bioanalytical Chemistry, Vol. 401, Issue 7 https://doi.org/10.1007/s00216-011-5310-y	journal	August 2011
Within tree variability of lignin composition in Populus Sykes, Robert; Kodrzycki, Bob; Tuskan, Gerald Wood Science and Technology, Vol. 42, Issue 8 https://doi.org/10.1007/s00226-008-0199-0	journal	June 2008
High throughput determination of glucan and xylan fractions in lignocelluloses Selig, Michael J.; Tucker, Melvin P.; Law, Cody Biotechnology Letters, Vol. 33, Issue 5 https://doi.org/10.1007/s10529-011-0526-7	journal	February 2011
Anaerobic microplate assay for direct microbial conversion of switchgrass and Avicel using Clostridium thermocellum Oguntimein, Gbekeloluwa B.; Rodriguez, Miguel; Dumitrache, Alexandru Biotechnology Letters, Vol. 40, Issue 2 https://doi.org/10.1007/s10529-017-2467-2	journal	November 2017
Role of pretreatment and conditioning processes on toxicity of lignocellulosic biomass hydrolysates Pienkos, Philip T.; Zhang, Min Cellulose, Vol. 16, Issue 4 https://doi.org/10.1007/s10570-009-9309-x	journal	June 2009
Improved multivariate calibration models for corn stover feedstock and dilute-acid pretreated corn stover Wolfrum, Edward J.; Sluiter, Amie D. Cellulose, Vol. 16, Issue 4 https://doi.org/10.1007/s10570-009-9320-2	journal	June 2009
Assessing corn stover composition and sources of variability via NIRS Templeton, David W.; Sluiter, Amie D.; Hayward, Tammy K. Cellulose, Vol. 16, Issue 4 https://doi.org/10.1007/s10570-009-9325-x	journal	June 2009
Characterization and enzymatic hydrolysis of wood from transgenic Pinus taeda engineered with syringyl lignin or reduced lignin content Edmunds, Charles W.; Peralta, Perry; Kelley, Stephen S. Cellulose, Vol. 24, Issue 4 https://doi.org/10.1007/s10570-017-1231-z	journal	February 2017
Extraction of Algal Lipids and Their Analysis by HPLC and Mass Spectrometry Jones, Jessica; Manning, Schonna; Montoya, Morela Journal of the American Oil Chemists' Society https://doi.org/10.1007/s11746-012-2044-8	journal	March 2012
High-Throughput Screening Techniques for Biomass Conversion Decker, Stephen R.; Brunecky, Roman; Tucker, Melvin P. BioEnergy Research, Vol. 2, Issue 4 https://doi.org/10.1007/s12155-009-9051-0	journal	October 2009
Rapid Assessment of Lignin Content and Structure in Switchgrass (Panicum virgatum L.) Grown Under Different Environmental Conditions Mann, David G. J.; Labbé, Nicole; Sykes, Robert W. BioEnergy Research, Vol. 2, Issue 4 https://doi.org/10.1007/s12155-009-9054-x	journal	October 2009
A High-Throughput Platform for Screening Milligram Quantities of Plant Biomass for Lignocellulose Digestibility Santoro, Nicholas; Cantu, Shane L.; Tornqvist, Carl-Erik BioEnergy Research, Vol. 3, Issue 1 https://doi.org/10.1007/s12155-009-9074-6	journal	January 2010
Validation of PyMBMS as a High-throughput Screen for Lignin Abundance in Lignocellulosic Biomass of Grasses Penning, Bryan W.; Sykes, Robert W.; Babcock, Nicholas C. BioEnergy Research, Vol. 7, Issue 3 https://doi.org/10.1007/s12155-014-9410-3	journal	January 2014
High-Throughput Method for Determining the Sugar Content in Biomass with Pyrolysis Molecular Beam Mass Spectrometry Sykes, Robert W.; Gjersing, Erica L.; Doeppke, Crissa L. BioEnergy Research, Vol. 8, Issue 3 https://doi.org/10.1007/s12155-015-9610-5	journal	April 2015
Fluorometric determination of the neutral lipid content of microalgal cells using Nile Red Cooksey, Keith E.; Guckert, James B.; Williams, Scott A. Journal of Microbiological Methods, Vol. 6, Issue 6 https://doi.org/10.1016/0167-7012(87)90019-4	journal	September 1987
Compositional analysis of biomass feedstocks by near infrared reflectance spectroscopy Sanderson, Matt A.; Agblevor, Foster; Collins, Michael Biomass and Bioenergy, Vol. 11, Issue 5 https://doi.org/10.1016/S0961-9534(96)00039-6	journal	January 1996
Biodiesel fuel production by transesterification of oils Fukuda, Hideki; Kondo, Akihiko; Noda, Hideo Journal of Bioscience and Bioengineering, Vol. 92, Issue 5 https://doi.org/10.1016/S1389-1723(01)80288-7	journal	January 2001
A high-throughput direct fluorescence resonance energy transfer-based assay for analyzing apoptotic proteases using flow cytometry and fluorescence lifetime measurements Suzuki, Miho; Sakata, Ichiro; Sakai, Takafumi Analytical Biochemistry, Vol. 491 https://doi.org/10.1016/j.ab.2015.08.022	journal	December 2015
High-throughput estimation of specific activities of enzyme/mutants in cell lysates through immunoturbidimetric assay of proteins Yang, Xiaolan; Feng, Yiran; Chong, Huimin Analytical Biochemistry, Vol. 534 https://doi.org/10.1016/j.ab.2017.05.015	journal	October 2017
Five Years of GWAS Discovery Visscher, Peter M.; Brown, Matthew A.; McCarthy, Mark I. The American Journal of Human Genetics, Vol. 90, Issue 1 https://doi.org/10.1016/j.ajhg.2011.11.029	journal	January 2012
Variation in corn stover composition and energy content with crop maturity Pordesimo, L. O.; Hames, B. R.; Sokhansanj, S. Biomass and Bioenergy, Vol. 28, Issue 4 https://doi.org/10.1016/j.biombioe.2004.09.003	journal	April 2005
Quantitative analysis of sugars in wood hydrolyzates with 1H NMR during the autohydrolysis of hardwoods Mittal, Ashutosh; Scott, Gary M.; Amidon, Thomas E. Bioresource Technology, Vol. 100, Issue 24 https://doi.org/10.1016/j.biortech.2009.06.107	journal	December 2009
High-throughput enzymatic hydrolysis of lignocellulosic biomass via in-situ regeneration Bharadwaj, Rajiv; Wong, April; Knierim, Bernhard Bioresource Technology, Vol. 102, Issue 2 https://doi.org/10.1016/j.biortech.2010.08.108	journal	January 2011
Biodiesel from microalgae Chisti, Yusuf Biotechnology Advances, Vol. 25, Issue 3, p. 294-306 https://doi.org/10.1016/j.biotechadv.2007.02.001	journal	May 2007
A comparison of different methods to estimate prediction uncertainty using Partial Least Squares (PLS): A practitioner's perspective Zhang, Lin; Garcia-Munoz, Salvador Chemometrics and Intelligent Laboratory Systems, Vol. 97, Issue 2 https://doi.org/10.1016/j.chemolab.2009.03.007	journal	July 2009
Biodiesel from algae: challenges and prospects Scott, Stuart A.; Davey, Matthew P.; Dennis, John S. Current Opinion in Biotechnology, Vol. 21, Issue 3 https://doi.org/10.1016/j.copbio.2010.03.005	journal	June 2010
Microscale and miniscale fermentation and screening Lattermann, Clemens; Büchs, Jochen Current Opinion in Biotechnology, Vol. 35 https://doi.org/10.1016/j.copbio.2014.12.005	journal	December 2015
Effect of organochlorine pesticides exposure on the maize root metabolome assessed using high-resolution magic-angle spinning 1H NMR spectroscopy Blondel, Claire; Khelalfa, Farid; Reynaud, Stéphane Environmental Pollution, Vol. 214 https://doi.org/10.1016/j.envpol.2016.04.057	journal	July 2016
Expression without boundaries: Cell-free protein synthesis in pharmaceutical research Casteleijn, Marco G.; Urtti, Arto; Sarkhel, Sanjay International Journal of Pharmaceutics, Vol. 440, Issue 1 https://doi.org/10.1016/j.ijpharm.2012.04.005	journal	January 2013
Estimation of terpene content in loblolly pine biomass using a hybrid fast-GC and pyrolysis-molecular beam mass spectrometry method Harman-Ware, Anne E.; Davis, Mark F.; Peter, Gary F. Journal of Analytical and Applied Pyrolysis, Vol. 124 https://doi.org/10.1016/j.jaap.2017.01.011	journal	March 2017
The development and application of high throughput cultivation technology in bioprocess development Long, Quan; Liu, Xiuxia; Yang, Yankun Journal of Biotechnology, Vol. 192 https://doi.org/10.1016/j.jbiotec.2014.03.028	journal	December 2014
Detecting outliers: Do not use standard deviation around the mean, use absolute deviation around the median Leys, Christophe; Ley, Christophe; Klein, Olivier Journal of Experimental Social Psychology, Vol. 49, Issue 4 https://doi.org/10.1016/j.jesp.2013.03.013	journal	July 2013
Fluorescent measurement of microalgal neutral lipids Elsey, Danielle; Jameson, David; Raleigh, Barry Journal of Microbiological Methods, Vol. 68, Issue 3 https://doi.org/10.1016/j.mimet.2006.11.008	journal	March 2007
A high throughput Nile red method for quantitative measurement of neutral lipids in microalgae Chen, Wei; Zhang, Chengwu; Song, Lirong Journal of Microbiological Methods, Vol. 77, Issue 1 https://doi.org/10.1016/j.mimet.2009.01.001	journal	April 2009
Parallel accelerated vector similarity calculations for genomics applications Joubert, Wayne; Nance, James; Weighill, Deborah Parallel Computing, Vol. 75 https://doi.org/10.1016/j.parco.2018.03.009	journal	July 2018
Lights, camera, action: high-throughput plant phenotyping is ready for a close-up Fahlgren, Noah; Gehan, Malia A.; Baxter, Ivan Current Opinion in Plant Biology, Vol. 24 https://doi.org/10.1016/j.pbi.2015.02.006	journal	April 2015
A robust high-throughput fungal biosensor assay for the detection of estrogen activity Zutz, Christoph; Wagener, Karen; Yankova, Desislava Steroids, Vol. 126 https://doi.org/10.1016/j.steroids.2017.07.005	journal	October 2017
Composition of structural carbohydrates in biomass: Precision of a liquid chromatography method using a neutral detergent extraction and a charged aerosol detector Godin, Bruno; Agneessens, Richard; Gerin, Patrick A. Talanta, Vol. 85, Issue 4 https://doi.org/10.1016/j.talanta.2011.07.044	journal	September 2011
New options to engineer biofuel microbes: Development and application of a high-throughput screening system Scheel, Michael; Lütke-Eversloh, Tina Metabolic Engineering, Vol. 17 https://doi.org/10.1016/j.ymben.2013.03.002	journal	May 2013
High-throughput protein purification and quality assessment for crystallization Kim, Youngchang; Babnigg, Gyorgy; Jedrzejczak, Robert Methods, Vol. 55, Issue 1 https://doi.org/10.1016/j.ymeth.2011.07.010	journal	September 2011
High-Resolution Quantitative Metabolome Analysis of Urine by Automated Flow Injection NMR Da Silva, Laeticia; Godejohann, Markus; Martin, François-Pierre J. Analytical Chemistry, Vol. 85, Issue 12 https://doi.org/10.1021/ac4004776	journal	May 2013
Concentration Measurement by Proton NMR Using the ERETIC Method Akoka, Serge; Barantin, Laurent; Trierweiler, Michel Analytical Chemistry, Vol. 71, Issue 13 https://doi.org/10.1021/ac981422i	journal	July 1999
Low-Conductivity Buffers for High-Sensitivity NMR Measurements Kelly, Alexander E.; Ou, Horng D.; Withers, Richard Journal of the American Chemical Society, Vol. 124, Issue 40 https://doi.org/10.1021/ja026121b	journal	October 2002
Compositional Analysis of Lignocellulosic Feedstocks. 1. Review and Description of Methods Sluiter, Justin B.; Ruiz, Raymond O.; Scarlata, Christopher J. Journal of Agricultural and Food Chemistry, Vol. 58, Issue 16, p. 9043-9053 https://doi.org/10.1021/jf1008023	journal	August 2010
The evolution of the host microbiome as an ecosystem on a leash Foster, Kevin R.; Schluter, Jonas; Coyte, Katharine Z. Nature, Vol. 548, Issue 7665 https://doi.org/10.1038/nature23292	journal	August 2017
Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis Biswal, Ajaya K.; Atmodjo, Melani A.; Li, Mi Nature Biotechnology, Vol. 36, Issue 3 https://doi.org/10.1038/nbt.4067	journal	February 2018
Variance component model to account for sample structure in genome-wide association studies Kang, Hyun Min; Sul, Jae Hoon; Service, Susan K. Nature Genetics, Vol. 42, Issue 4 https://doi.org/10.1038/ng.548	journal	March 2010
Network biology: understanding the cell's functional organization Barabási, Albert-László; Oltvai, Zoltán N. Nature Reviews Genetics, Vol. 5, Issue 2 https://doi.org/10.1038/nrg1272	journal	February 2004
Pleiotropy in complex traits: challenges and strategies Solovieff, Nadia; Cotsapas, Chris; Lee, Phil H. Nature Reviews Genetics, Vol. 14, Issue 7 https://doi.org/10.1038/nrg3461	journal	June 2013
Lignin content in natural Populus variants affects sugar release Studer, M. H.; DeMartini, J. D.; Davis, M. F. Proceedings of the National Academy of Sciences, Vol. 108, Issue 15, p. 6300-6305 https://doi.org/10.1073/pnas.1009252108	journal	March 2011
Applications of near-infrared spectroscopy (NIRS) in biomass energy conversion processes: A review Skvaril, Jan; Kyprianidis, Konstantinos G.; Dahlquist, Erik Applied Spectroscopy Reviews, Vol. 52, Issue 8 https://doi.org/10.1080/05704928.2017.1289471	journal	January 2017
Multivariate Analysis of Quality. An Introduction Martens, H. Martens and M. Measurement Science and Technology, Vol. 12, Issue 10 https://doi.org/10.1088/0957-0233/12/10/708	journal	September 2001
ORIGINAL RESEARCH: Lignocellulose recalcitrance screening by integrated high-throughput hydrothermal pretreatment and enzymatic saccharification Selig, Michael J.; Tucker, Melvin P.; Sykes, Robert W. Industrial Biotechnology, Vol. 6, Issue 2 https://doi.org/10.1089/ind.2010.0009	journal	April 2010
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks Shannon, P. Genome Research, Vol. 13, Issue 11 https://doi.org/10.1101/gr.1239303	journal	November 2003
Genetic Determinants for Enzymatic Digestion of Lignocellulosic Biomass Are Independent of Those for Lignin Abundance in a Maize Recombinant Inbred Population Penning, Bryan W.; Sykes, Robert W.; Babcock, Nicholas C. Plant Physiology, Vol. 165, Issue 4 https://doi.org/10.1104/pp.114.242446	journal	June 2014
Ecometabolomics: optimized NMR-based method Rivas-Ubach, Albert; Pérez-Trujillo, Miriam; Sardans, Jordi Methods in Ecology and Evolution, Vol. 4, Issue 5 https://doi.org/10.1111/2041-210X.12028	journal	February 2013
NMR Techniques Coupled with Multivariate Statistical Analysis: Tools to Analyse Oryza sativa Metabolic Content under Stress Conditions Fumagalli, E.; Baldoni, E.; Abbruscato, P. Journal of Agronomy and Crop Science, Vol. 195, Issue 2 https://doi.org/10.1111/j.1439-037X.2008.00344.x	journal	April 2009
Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem Wegrzyn, Jill L.; Eckert, Andrew J.; Choi, Minyoung New Phytologist, Vol. 188, Issue 2 https://doi.org/10.1111/j.1469-8137.2010.03415.x	journal	September 2010
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing Benjamini, Yoav; Hochberg, Yosef Journal of the Royal Statistical Society: Series B (Methodological), Vol. 57, Issue 1 https://doi.org/10.1111/j.2517-6161.1995.tb02031.x	journal	January 1995
Metabolic response of maize plants to multi-factorial abiotic stresses Sun, C. X.; Li, M. Q.; Gao, X. X. Plant Biology, Vol. 18 https://doi.org/10.1111/plb.12305	journal	January 2015
Engineering central metabolism - a grand challenge for plant biologists Sweetlove, Lee J.; Nielsen, Jens; Fernie, Alisdair R. The Plant Journal, Vol. 90, Issue 4 https://doi.org/10.1111/tpj.13464	journal	March 2017
An Outlook on Microalgal Biofuels Wijffels, R. H.; Barbosa, M. J. Science, Vol. 329, Issue 5993, p. 796-799 https://doi.org/10.1126/science.1189003	journal	August 2010
A Rapid Method of Total Lipid Extraction and Purification Bligh, E. G.; Dyer, W. J. Canadian Journal of Biochemistry and Physiology, Vol. 37, Issue 1 https://doi.org/10.1139/y59-099	journal	January 1959
Structure of Linkage Disequilibrium in Plants Flint-Garcia, Sherry A.; Thornsberry, Jeffry M.; Buckler, Edward S. Annual Review of Plant Biology, Vol. 54, Issue 1 https://doi.org/10.1146/annurev.arplant.54.031902.134907	journal	June 2003
A Review of Calibration Transfer Practices and Instrument Differences in Spectroscopy Workman, Jerome J. Applied Spectroscopy, Vol. 72, Issue 3 https://doi.org/10.1177/0003702817736064	journal	October 2017
The advantages and limitations of trait analysis with GWAS: a review Korte, Arthur; Farlow, Ashley Plant Methods, Vol. 9, Issue 1 https://doi.org/10.1186/1746-4811-9-29	journal	January 2013
Automated saccharification assay for determination of digestibility in plant materials Gomez, Leonardo D.; Whitehead, Caragh; Barakate, Abdellah Biotechnology for Biofuels, Vol. 3, Issue 1 https://doi.org/10.1186/1754-6834-3-23	journal	January 2010
Rapid selection and identification of Miscanthus genotypes with enhanced glucan and xylan yields from hydrothermal pretreatment followed by enzymatic hydrolysis Zhang, Taiying; Wyman, Charles E.; Jakob, Katrin Biotechnology for Biofuels, Vol. 5, Issue 1 https://doi.org/10.1186/1754-6834-5-56	journal	January 2012
Evaluation of the bioconversion of genetically modified switchgrass using simultaneous saccharification and fermentation and a consolidated bioprocessing approach Yee, Kelsey L.; Rodriguez Jr, Miguel; Tschaplinski, Timothy J. Biotechnology for Biofuels, Vol. 5, Issue 1 https://doi.org/10.1186/1754-6834-5-81	journal	January 2012
Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain Yee, Kelsey L.; Rodriguez Jr, Miguel; Thompson, Olivia A. Biotechnology for Biofuels, Vol. 7, Issue 1 https://doi.org/10.1186/1754-6834-7-75	journal	January 2014
High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus Muchero, Wellington; Guo, Jianjun; DiFazio, Stephen P. BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/s12864-015-1215-z	journal	January 2015
High-throughput fermentation screening for the yeast Yarrowia lipolytica with real-time monitoring of biomass and lipid production Back, Alexandre; Rossignol, Tristan; Krier, François Microbial Cell Factories, Vol. 15, Issue 1 https://doi.org/10.1186/s12934-016-0546-z	journal	August 2016
Methodology for enabling high-throughput simultaneous saccharification and fermentation screening of yeast using solid biomass as a substrate Elliston, Adam; Wood, Ian P.; Soucouri, Marie J. Biotechnology for Biofuels, Vol. 8, Issue 1 https://doi.org/10.1186/s13068-014-0181-z	journal	January 2015
Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock Biswal, Ajaya K.; Hao, Zhangying; Pattathil, Sivakumar Biotechnology for Biofuels, Vol. 8, Issue 1 https://doi.org/10.1186/s13068-015-0218-y	journal	January 2015
Rapid analysis of composition and reactivity in cellulosic biomass feedstocks with near-infrared spectroscopy Payne, Courtney E.; Wolfrum, Edward J. Biotechnology for Biofuels, Vol. 8, Issue 1 https://doi.org/10.1186/s13068-015-0222-2	journal	March 2015
Down-regulation of p-coumaroyl quinate/shikimate 3′-hydroxylase (C3′H) and cinnamate 4-hydroxylase (C4H) genes in the lignin biosynthetic pathway of Eucalyptus urophylla × E. grandis leads to improved sugar release Sykes, Robert W.; Gjersing, Erica L.; Foutz, Kirk Biotechnology for Biofuels, Vol. 8, Issue 1 https://doi.org/10.1186/s13068-015-0316-x	journal	August 2015
Consolidated bioprocessing of Populus using Clostridium (Ruminiclostridium) thermocellum: a case study on the impact of lignin composition and structure Dumitrache, Alexandru; Akinosho, Hannah; Rodriguez, Miguel Biotechnology for Biofuels, Vol. 9, Issue 1 https://doi.org/10.1186/s13068-016-0445-x	journal	February 2016
Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum Tian, Liang; Papanek, Beth; Olson, Daniel G. Biotechnology for Biofuels, Vol. 9, Issue 1 https://doi.org/10.1186/s13068-016-0528-8	journal	June 2016
Hyperspectral imaging: a review of best practice, performance and pitfalls for inline and online applications Boldrini, Barbara; Kessler, Waltraud; Rebner, Karsten Journal of Near Infrared Spectroscopy, Vol. 20, Issue 5 https://doi.org/10.1255/jnirs.1003	journal	January 2012
Near Infrared Calibration Models for Pretreated Corn Stover Slurry Solids, Isolated and in situ Sluiter, Amie; Wolfrum, Ed Journal of Near Infrared Spectroscopy, Vol. 21, Issue 4 https://doi.org/10.1255/jnirs.1065	journal	January 2013
Measurement of cellulase activities Ghose, T. K. Pure and Applied Chemistry, Vol. 59, Issue 2 https://doi.org/10.1351/pac198759020257	journal	January 1987
Automated Filter Paper Assay for Determination of Cellulase Activity Decker, Stephen R.; Adney, William S.; Jennings, Edward Applied Biochemistry and Biotechnology, Vol. 107, Issue 1-3 https://doi.org/10.1385/ABAB:107:1-3:689	journal	January 2003
1H HRMAS NMR spectroscopy and chemometrics for evaluation of metabolic changes in citrus sinensis Caused by Xanthomonas axonopodis pv. citri Silva, Lorena M. A.; Alves Filho, Elenilson G.; Choze, Rafael Journal of the Brazilian Chemical Society, Vol. 23, Issue 6 https://doi.org/10.1590/S0103-50532012000600009	journal	January 2012
Predicting Forage Quality by Infrared Replectance Spectroscopy Norris, K. H.; Barnes, R. F.; Moore, J. E. Journal of Animal Science, Vol. 43, Issue 4 https://doi.org/10.2527/jas1976.434889x	journal	October 1976
Metabolomics: Creating new potentials for unraveling the mechanisms in response to salt and drought stress and for the biotechnological improvement of xero-halophytes Ruan, Cheng-Jiang; Teixeira da Silva, Jaime A. Critical Reviews in Biotechnology, Vol. 31, Issue 2 https://doi.org/10.3109/07388551.2010.505908	journal	November 2010
Analysis of Forages by Infrared Reflectance Shenk, J. S.; Westerhaus, M. O.; Hoover, M. R. Journal of Dairy Science, Vol. 62, Issue 5 https://doi.org/10.3168/jds.S0022-0302(79)83330-5	journal	May 1979
Determination of Forage Quality by near Infrared Reflectance Spectroscopy: Efficacy of Broad-Based Calibration Equations Abrams, S. M.; Shenk, J. S.; Westerhaus, M. O. Journal of Dairy Science, Vol. 70, Issue 4 https://doi.org/10.3168/jds.S0022-0302(87)80077-2	journal	April 1987
Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery Weighill, Deborah; Jones, Piet; Shah, Manesh Frontiers in Energy Research, Vol. 6 https://doi.org/10.3389/fenrg.2018.00030	journal	May 2018
NIR and Py-mbms coupled with multivariate data analysis as a high-throughput biomass characterization technique: a review Xiao, Li; Wei, Hui; Himmel, Michael E. Frontiers in Plant Science, Vol. 5 https://doi.org/10.3389/fpls.2014.00388	journal	August 2014
Composition and Quantitation of Microalgal Lipids by ERETIC 1H NMR Method Nuzzo, Genoveffa; Gallo, Carmela; d'Ippolito, Giuliana Marine Drugs, Vol. 11, Issue 10 https://doi.org/10.3390/md11103742	journal	September 2013
Comprehensive Compositional Analysis of Plant Cell Walls (Lignocellulosic biomass) Part II: Carbohydrates Foster, Cliff E.; Martin, Tina M.; Pauly, Markus Journal of Visualized Experiments, Issue 37 https://doi.org/10.3791/1837	journal	January 2010
High-throughput Screening of Recalcitrance Variations in Lignocellulosic Biomass: Total Lignin, Lignin Monomers, and Enzymatic Sugar Release Decker, Stephen R.; Sykes, Robert W.; Turner, Geoffrey B. Journal of Visualized Experiments, Issue 103 https://doi.org/10.3791/53163	journal	January 2015

Similar Records

High-Throughput Screening Techniques for Biomass Conversion

Journal Article · 2009 · BioEnergy Research · OSTI ID:1151960

Roman, Brunecky

Barriers to predictive high-throughput screening for spin-crossover

Journal Article · 2022 · Computational Materials Science · OSTI ID:2205244

Mejía-Rodríguez, Daniel; Albavera-Mata, Angel; Fonseca, Eric; +4 more

High-Throughput Switchgrass Phenotyping and Biomass Modeling by UAV

Journal Article · 2020 · Frontiers in Plant Science · OSTI ID:1678775

Li, Fei; Piasecki, Cristiano; Millwood, Reginald J.; +3 more

Related Subjects

09 BIOMASS FUELS
biomass compositional analysis
biomass conversion
biomass recalcitrance
biomass recalcitrance
biomass compositional analysis
high throughput analysis
neural networks
biomass conversion
high throughput analysis
neural networks

Title: High Throughput Screening Technologies in Biomass Characterization

Citation Formats

References (105)

Similar Records

Related Subjects