Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland

Smith, Garrett J.; Angle, Jordan C.; Solden, Lindsey M.; Borton, Mikayla A.; Morin, Timothy H.; Daly, Rebecca A.; Johnston, Michael D.; Stefanik, Kay C.; Wolfe, Richard; Gil, Bohrer; Wrighton, Kelly C.; Bailey, Vanessa; Jansson, Janet K.

doi:10.1128/mbio.00815-18

Title: Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland

Journal Article · 06 November 2018 · mBio (Online)

DOI: https://doi.org/10.1128/mbio.00815-18 · OSTI ID:1481031

^[1]; Angle, Jordan C. ^[1]; Solden, Lindsey M. ^[1]; Borton, Mikayla A. ^[2]; Morin, Timothy H. ^[3]; Daly, Rebecca A. ^[2]; Johnston, Michael D. ^[4]; Stefanik, Kay C. ^[1]; Wolfe, Richard ^[2]; Gil, Bohrer ^[1]; Wrighton, Kelly C. ^[2]; Bailey, Vanessa ^[5]; Jansson, Janet K. ^[5]

The Ohio State Univ., Columbus, OH (United States)
The Ohio State Univ., Columbus, OH (United States); Colorado State Univ., Fort Collins, CO (United States)
State Univ. of New York College of Environmental Science and Forestry, Syracuse, NY (United States)
National Inst. of Environmental Health Science, Durham, NC (United States)
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

Microbial carbon degradation and methanogenesis in wetland soils generate a large proportion of atmospheric methane, a highly potent greenhouse gas. Despite their potential to mitigate greenhouse gas emissions, knowledge about methane-consuming methanotrophs is often limited to lower-resolution single-gene surveys that fail to capture the taxonomic and metabolic diversity of these microorganisms in soils. Here our objective was to use genome-enabled approaches to investigate methanotroph membership, distribution, and in situ activity across spatial and seasonal gradients in a freshwater wetland near Lake Erie. 16S rRNA gene analyses demonstrated that members of the methanotrophic Methylococcales were dominant, with the dominance largely driven by the relative abundance of four taxa, and enriched in oxic surface soils. Three methanotroph genomes from assembled soil metagenomes were assigned to the genus Methylobacter and represented the most abundant methanotrophs across the wetland. Paired metatranscriptomes confirmed that these Old Woman Creek (OWC) Methylobacter members accounted for nearly all the aerobic methanotrophic activity across two seasons. In addition to having the capacity to couple methane oxidation to aerobic respiration, these new genomes encoded denitrification potential that may sustain energy generation in soils with lower dissolved oxygen concentrations. We further show that Methylobacter members that were closely related to the OWC members were present in many other high-methane-emitting freshwater and soil sites, suggesting that this lineage could participate in methane consumption in analogous ecosystems. This work contributes to the growing body of research suggesting that Methylobacter may represent critical mediators of methane fluxes in freshwater saturated sediments and soils worldwide.

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Research Organization:: The Ohio State Univ., Columbus, OH (United States); Univ. of California, Oakland, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF)

Grant/Contract Number:: SC0018022; AC02-05CH11231; DGE1343012

OSTI ID:: 1481031

Alternate ID(s):: OSTI ID: 1612814

Journal Information:: mBio (Online), Vol. 9, Issue 6; ISSN 2150-7511

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 50 works

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