The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination
Abstract
In the many scientific endeavors that are driven by organic chemistry, unambiguous identification of small molecules is of paramount importance. Over the past 50 years, NMR and other powerful spectroscopic techniques have been developed to address this challenge. While almost all of these techniques rely on inference of connectivity, the unambiguous determination of a small molecule’s structure requires X-ray and/or neutron diffraction studies. In practice, however, X-ray crystallography is rarely applied in routine organic chemistry due to intrinsic limitations of both the analytes and the technique. Here we report the use of the electron cryo-microscopy (cryoEM) method microcrystal electron diffraction (MicroED) to provide routine and unambiguous structural determination of small organic molecules. From simple powders, with minimal sample preparation, we could collect high-quality MicroED data from nanocrystals (~100 nm, ~10–15 g) resulting in atomic resolution (<1 Å) crystal structures in minutes.
- Authors:
-
- The Warren and Katharine Schlinger Laboratory of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
- Publication Date:
- Research Org.:
- Univ. of California, Los Angeles, CA (United States); California Institute of Technology (CalTech), Pasadena, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF); National Inst. of Health (NIH) (United States)
- OSTI Identifier:
- 1480568
- Alternate Identifier(s):
- OSTI ID: 1508759
- Grant/Contract Number:
- FC02-02ER63421; DGE-1650604; R01GM080269; R35GM128867; R35 GM128936
- Resource Type:
- Published Article
- Journal Name:
- ACS Central Science
- Additional Journal Information:
- Journal Name: ACS Central Science Journal Volume: 4 Journal Issue: 11; Journal ID: ISSN 2374-7943
- Publisher:
- American Chemical Society
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY
Citation Formats
Jones, Christopher G., Martynowycz, Michael W., Hattne, Johan, Fulton, Tyler J., Stoltz, Brian M., Rodriguez, Jose A., Nelson, Hosea M., and Gonen, Tamir. The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination. United States: N. p., 2018.
Web. doi:10.1021/acscentsci.8b00760.
Jones, Christopher G., Martynowycz, Michael W., Hattne, Johan, Fulton, Tyler J., Stoltz, Brian M., Rodriguez, Jose A., Nelson, Hosea M., & Gonen, Tamir. The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination. United States. https://doi.org/10.1021/acscentsci.8b00760
Jones, Christopher G., Martynowycz, Michael W., Hattne, Johan, Fulton, Tyler J., Stoltz, Brian M., Rodriguez, Jose A., Nelson, Hosea M., and Gonen, Tamir. Fri .
"The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination". United States. https://doi.org/10.1021/acscentsci.8b00760.
@article{osti_1480568,
title = {The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination},
author = {Jones, Christopher G. and Martynowycz, Michael W. and Hattne, Johan and Fulton, Tyler J. and Stoltz, Brian M. and Rodriguez, Jose A. and Nelson, Hosea M. and Gonen, Tamir},
abstractNote = {In the many scientific endeavors that are driven by organic chemistry, unambiguous identification of small molecules is of paramount importance. Over the past 50 years, NMR and other powerful spectroscopic techniques have been developed to address this challenge. While almost all of these techniques rely on inference of connectivity, the unambiguous determination of a small molecule’s structure requires X-ray and/or neutron diffraction studies. In practice, however, X-ray crystallography is rarely applied in routine organic chemistry due to intrinsic limitations of both the analytes and the technique. Here we report the use of the electron cryo-microscopy (cryoEM) method microcrystal electron diffraction (MicroED) to provide routine and unambiguous structural determination of small organic molecules. From simple powders, with minimal sample preparation, we could collect high-quality MicroED data from nanocrystals (~100 nm, ~10–15 g) resulting in atomic resolution (<1 Å) crystal structures in minutes.},
doi = {10.1021/acscentsci.8b00760},
journal = {ACS Central Science},
number = 11,
volume = 4,
place = {United States},
year = {Fri Nov 02 00:00:00 EDT 2018},
month = {Fri Nov 02 00:00:00 EDT 2018}
}
https://doi.org/10.1021/acscentsci.8b00760
Web of Science
Figures / Tables:
Works referencing / citing this record:
CCDC 1876036: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876037: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876038: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876039: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876040: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876041: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876042: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876043: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876044: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
CCDC 1876045: Experimental Crystal Structure Determination
dataset, January 2018
- Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
- Cambridge Crystallographic Data Centre
Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
journal, August 2019
- Guzmán-Afonso, Candelaria; Hong, You-lee; Colaux, Henri
- Nature Communications, Vol. 10, Issue 1
New Directions in Metal Phosphonate and Phosphinate Chemistry
journal, May 2019
- Shearan, Stephen J. I.; Stock, Norbert; Emmerling, Franziska
- Crystals, Vol. 9, Issue 5
The hidden enzymology of bacterial natural product biosynthesis
journal, June 2019
- Scott, Thomas A.; Piel, Jörn
- Nature Reviews Chemistry, Vol. 3, Issue 7
Understanding hydrogen-bonding structures of molecular crystals via electron and NMR nanocrystallography
journal, August 2019
- Guzmán-Afonso, Candelaria; Hong, You-lee; Colaux, Henri
- Nature Communications, Vol. 10, Issue 1
The hidden enzymology of bacterial natural product biosynthesis
journal, June 2019
- Scott, Thomas A.; Piel, Jörn
- Nature Reviews Chemistry, Vol. 3, Issue 7
New Directions in Metal Phosphonate and Phosphinate Chemistry
journal, May 2019
- Shearan, Stephen J. I.; Stock, Norbert; Emmerling, Franziska
- Crystals, Vol. 9, Issue 5
Precise Control Over Kinetics of Molecular Assembly: Production of Particles with Tunable Sizes and Crystalline Forms
journal, June 2020
- Fan, Qingrui; Li, Linhai; Xue, Han
- Angewandte Chemie International Edition
Hydrolase–like catalysis and structural resolution of natural products by a metal–organic framework
journal, June 2020
- Mon, Marta; Bruno, Rosaria; Sanz-Navarro, Sergio
- Nature Communications, Vol. 11, Issue 1
Crystalline Sponges as a Sensitive and Fast Method for Metabolite Identification: Application to Gemfibrozil and its Phase I and II Metabolites
journal, May 2020
- Rosenberger, Lara; von Essen, Carolina; Khutia, Anupam
- Drug Metabolism and Disposition, Vol. 48, Issue 7
Kristall‐Engineering: ein Blick in die Zukunft
journal, February 2019
- Nangia, Ashwini K.; Desiraju, Gautam R.
- Angewandte Chemie, Vol. 131, Issue 13
Mikrokristalline Elektronenbeugung (MicroED) zur Strukturaufklärung niedermolekularer Verbindungen
journal, December 2018
- Kunde, Tom; Schmidt, Bernd M.
- Angewandte Chemie
Reassignments and Corroborations of Oxo‐Bridged Natural Products Directed by OSE and DU8+ NMR Computation
journal, April 2019
- Kutateladze, Andrei G.; Krenske, Elizabeth H.; Williams, Craig M.
- Angewandte Chemie, Vol. 131, Issue 21
The Crystal Structure of Orthocetamol Solved by 3D Electron Diffraction
journal, July 2019
- Andrusenko, Iryna; Hamilton, Victoria; Mugnaioli, Enrico
- Angewandte Chemie, Vol. 131, Issue 32
Microcrystal Electron Diffraction (MicroED) for Small‐Molecule Structure Determination
journal, January 2019
- Kunde, Tom; Schmidt, Bernd M.
- Angewandte Chemie International Edition, Vol. 58, Issue 3
Reassignments and Corroborations of Oxo‐Bridged Natural Products Directed by OSE and DU8+ NMR Computation
journal, May 2019
- Kutateladze, Andrei G.; Krenske, Elizabeth H.; Williams, Craig M.
- Angewandte Chemie International Edition, Vol. 58, Issue 21
Natural Products as a Foundation for Drug Discovery
journal, August 2019
- Beutler, John A.
- Current Protocols in Pharmacology, Vol. 86, Issue 1
Stereocontrolled Synthesis as an Enabling Tool for the Configurational Assignment of Marine Polyketide Natural Products: Stereocontrolled Synthesis as an Enabling Tool for the Configurational Assignment of Marine Polyketide Natural Products
journal, October 2019
- Lam, Nelson Y. S.; Paterson, Ian
- European Journal of Organic Chemistry, Vol. 2020, Issue 16
Serial protein crystallography in an electron microscope
journal, February 2020
- Bücker, Robert; Hogan-Lamarre, Pascal; Mehrabi, Pedram
- Nature Communications, Vol. 11, Issue 1
The cryo-EM method microcrystal electron diffraction (MicroED)
journal, April 2019
- Nannenga, Brent L.; Gonen, Tamir
- Nature Methods, Vol. 16, Issue 5
Structure, properties, and biological functions of nonribosomal lipopeptides from pseudomonads
journal, January 2020
- Götze, Sebastian; Stallforth, Pierre
- Natural Product Reports, Vol. 37, Issue 1
Crystal structure and orientation of organic semiconductor thin films by microcrystal electron diffraction and grazing-incidence wide-angle X-ray scattering
journal, January 2020
- Levine, Andrew M.; Bu, Guanhong; Biswas, Sankarsan
- Chemical Communications, Vol. 56, Issue 30
Data-driven challenges and opportunities in crystallography
journal, July 2019
- Glynn, Calina; Rodriguez, Jose A.
- Emerging Topics in Life Sciences, Vol. 3, Issue 4
MicroED methodology and development
journal, January 2020
- Nannenga, Brent L.
- Structural Dynamics, Vol. 7, Issue 1
MicroED with the Falcon III direct electron detector
journal, August 2019
- Hattne, Johan; Martynowycz, Michael W.; Penczek, Pawel A.
- IUCrJ, Vol. 6, Issue 5
Polymorph evolution during crystal growth studied by 3D electron diffraction
journal, January 2020
- Broadhurst, Edward T.; Xu, Hongyi; Clabbers, Max T. B.
- IUCrJ, Vol. 7, Issue 1
Extension of the transferable aspherical pseudoatom data bank for the comparison of molecular electrostatic potentials in structure–activity studies
journal, February 2019
- Kumar, Prashant; Gruza, Barbara; Bojarowski, Sławomir Antoni
- Acta Crystallographica Section A Foundations and Advances, Vol. 75, Issue 2
Solving a new R2lox protein structure by microcrystal electron diffraction
journal, August 2019
- Xu, Hongyi; Lebrette, Hugo; Clabbers, Max T. B.
- Science Advances, Vol. 5, Issue 8
Use of a scaffold peptide in the biosynthesis of amino acid–derived natural products
journal, July 2019
- Ting, Chi P.; Funk, Michael A.; Halaby, Steve L.
- Science, Vol. 365, Issue 6450
Electron diffraction determines molecular absolute configuration in a pharmaceutical nanocrystal
journal, May 2019
- Brázda, Petr; Palatinus, Lukáš; Babor, Martin
- Science, Vol. 364, Issue 6441
Absolute structure, at the nanoscale
journal, May 2019
- Xu, Hongyi; Zou, Xiaodong
- Science, Vol. 364, Issue 6441
Total synthesis reveals atypical atropisomerism in a small-molecule natural product, tryptorubin A
journal, January 2020
- Reisberg, Solomon H.; Gao, Yang; Walker, Allison S.
- Science, Vol. 367, Issue 6476
Figures / Tables found in this record: