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Title: The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination

Abstract

In the many scientific endeavors that are driven by organic chemistry, unambiguous identification of small molecules is of paramount importance. Over the past 50 years, NMR and other powerful spectroscopic techniques have been developed to address this challenge. While almost all of these techniques rely on inference of connectivity, the unambiguous determination of a small molecule’s structure requires X-ray and/or neutron diffraction studies. In practice, however, X-ray crystallography is rarely applied in routine organic chemistry due to intrinsic limitations of both the analytes and the technique. Here we report the use of the electron cryo-microscopy (cryoEM) method microcrystal electron diffraction (MicroED) to provide routine and unambiguous structural determination of small organic molecules. From simple powders, with minimal sample preparation, we could collect high-quality MicroED data from nanocrystals (~100 nm, ~10–15 g) resulting in atomic resolution (<1 Å) crystal structures in minutes.

Authors:
; ; ;  [1]; ORCiD logo [1]; ; ;
  1. The Warren and Katharine Schlinger Laboratory of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
Publication Date:
Research Org.:
Univ. of California, Los Angeles, CA (United States); California Institute of Technology (CalTech), Pasadena, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF); National Inst. of Health (NIH) (United States)
OSTI Identifier:
1480568
Alternate Identifier(s):
OSTI ID: 1508759
Grant/Contract Number:  
FC02-02ER63421; DGE-1650604; R01GM080269; R35GM128867; R35 GM128936
Resource Type:
Published Article
Journal Name:
ACS Central Science
Additional Journal Information:
Journal Name: ACS Central Science Journal Volume: 4 Journal Issue: 11; Journal ID: ISSN 2374-7943
Publisher:
American Chemical Society
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

Jones, Christopher G., Martynowycz, Michael W., Hattne, Johan, Fulton, Tyler J., Stoltz, Brian M., Rodriguez, Jose A., Nelson, Hosea M., and Gonen, Tamir. The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination. United States: N. p., 2018. Web. doi:10.1021/acscentsci.8b00760.
Jones, Christopher G., Martynowycz, Michael W., Hattne, Johan, Fulton, Tyler J., Stoltz, Brian M., Rodriguez, Jose A., Nelson, Hosea M., & Gonen, Tamir. The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination. United States. https://doi.org/10.1021/acscentsci.8b00760
Jones, Christopher G., Martynowycz, Michael W., Hattne, Johan, Fulton, Tyler J., Stoltz, Brian M., Rodriguez, Jose A., Nelson, Hosea M., and Gonen, Tamir. Fri . "The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination". United States. https://doi.org/10.1021/acscentsci.8b00760.
@article{osti_1480568,
title = {The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination},
author = {Jones, Christopher G. and Martynowycz, Michael W. and Hattne, Johan and Fulton, Tyler J. and Stoltz, Brian M. and Rodriguez, Jose A. and Nelson, Hosea M. and Gonen, Tamir},
abstractNote = {In the many scientific endeavors that are driven by organic chemistry, unambiguous identification of small molecules is of paramount importance. Over the past 50 years, NMR and other powerful spectroscopic techniques have been developed to address this challenge. While almost all of these techniques rely on inference of connectivity, the unambiguous determination of a small molecule’s structure requires X-ray and/or neutron diffraction studies. In practice, however, X-ray crystallography is rarely applied in routine organic chemistry due to intrinsic limitations of both the analytes and the technique. Here we report the use of the electron cryo-microscopy (cryoEM) method microcrystal electron diffraction (MicroED) to provide routine and unambiguous structural determination of small organic molecules. From simple powders, with minimal sample preparation, we could collect high-quality MicroED data from nanocrystals (~100 nm, ~10–15 g) resulting in atomic resolution (<1 Å) crystal structures in minutes.},
doi = {10.1021/acscentsci.8b00760},
journal = {ACS Central Science},
number = 11,
volume = 4,
place = {United States},
year = {Fri Nov 02 00:00:00 EDT 2018},
month = {Fri Nov 02 00:00:00 EDT 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1021/acscentsci.8b00760

Citation Metrics:
Cited by: 204 works
Citation information provided by
Web of Science

Figures / Tables:

Figure 1 Figure 1: Process of applying MicroED to small molecule structural analysis. Here commercial progesterone (1) was analyzed, and an atomic resolution structure was determined at 1 Å resolution. Grid holes are 1 μm in diameter.

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Works referencing / citing this record:

CCDC 1876036: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z59h

CCDC 1876037: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5bj

CCDC 1876038: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5ck

CCDC 1876039: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5dl

CCDC 1876040: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5fm

CCDC 1876041: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5gn

CCDC 1876042: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5hp

CCDC 1876043: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5jq

CCDC 1876044: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5kr

CCDC 1876045: Experimental Crystal Structure Determination
dataset, January 2018

  • Jones, Christopher G.; Martynowycz, Michael W.; Hattne, Johan
  • Cambridge Crystallographic Data Centre
  • DOI: 10.5517/ccdc.csd.cc20z5ls

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The hidden enzymology of bacterial natural product biosynthesis
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New Directions in Metal Phosphonate and Phosphinate Chemistry
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Figures/Tables have been extracted from DOE-funded journal article accepted manuscripts.