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Title: Recent Advances in the Transcriptional Regulation of Secondary Cell Wall Biosynthesis in the Woody Plants

Journal Article · · Frontiers in Plant Science

Not Available

Research Organization:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1478538
Journal Information:
Frontiers in Plant Science, Journal Name: Frontiers in Plant Science Vol. 9; ISSN 1664-462X
Publisher:
Frontiers Media SACopyright Statement
Country of Publication:
Switzerland
Language:
English

References (136)

Over-expression of a subgroup 4 R2R3 type MYB transcription factor gene from Leucaena leucocephala reduces lignin content in transgenic tobacco journal October 2012
Virus-induced gene silencing (VIGS)-mediated functional characterization of two genes involved in lignocellulosic secondary cell wall formation journal August 2016
The interacting MYB75 and KNAT7 transcription factors modulate secondary cell wall deposition both in stems and seed coat in Arabidopsis journal January 2013
Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq journal September 2014
Identification and characterization of a wood-associated NAC domain transcription factor PtoVNS11 from Populus tomentosa Carr. journal April 2015
MYB transcription factors are differentially expressed and regulated during secondary vascular tissue development in hybrid aspen journal September 2004
The Populus homeobox gene ARBORKNOX1 reveals overlapping mechanisms regulating the shoot apical meristem and the vascular cambium journal August 2006
The grapevine transcription factor WRKY2 influences the lignin pathway and xylem development in tobacco journal November 2009
Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis journal January 2012
Transcription factors that directly regulate the expression of CSLA9 encoding mannan synthase in Arabidopsis thaliana journal November 2013
Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis journal May 2014
The NAC transcription factor OsSWN1 regulates secondary cell wall development in Oryza sativa journal January 2015
The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset journal February 1994
Characterization of PTM5 in aspen trees: a MADS-box gene expressed during woody vascular development journal October 2003
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AtMYB61, an R2R3-MYB Transcription Factor Controlling Stomatal Aperture in Arabidopsis thaliana journal July 2005
Molecular characterization of Quercus suber MYB1, a transcription factor up-regulated in cork tissues journal January 2013
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The formation of wood and its control journal February 2014
Molecular characterization of EgMYB1, a putative transcriptional repressor of the lignin biosynthetic pathway journal November 2007
ZmNST3 and ZmNST4 are master switches for secondary wall deposition in maize ( Zea mays L.) journal January 2018
NAC transcription factors: structurally distinct, functionally diverse journal February 2005
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation journal July 2007
Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis journal November 2010
Long noncoding RNA: unveiling hidden layer of gene regulatory networks journal January 2012
Alternative splicing in plants – coming of age journal October 2012
The Pivotal Role of Ethylene in Plant Growth journal April 2018
Characterisation of PtMYB1, an R2R3-MYB from pine xylem journal November 2003
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate journal April 2010
An Arabidopsis gene regulatory network for secondary cell wall synthesis journal December 2014
Functions of microRNAs and related small RNAs in plants journal May 2006
Wood development: Growth through knowledge journal May 2015
Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches journal September 2009
Functional Characterization of Populus PsnSHN2 in Coordinated Regulation of Secondary Wall Components in Tobacco journal March 2017
Regulation of secondary cell wall biosynthesis by poplar R2R3 MYB transcription factor PtrMYB152 in Arabidopsis journal May 2014
Poplar PdMYB221 is involved in the direct and indirect regulation of secondary wall biosynthesis during wood formation journal July 2015
PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa journal January 2016
Wood reinforcement of poplar by rice NAC transcription factor journal January 2016
PtoMYB156 is involved in negative regulation of phenylpropanoid metabolism and secondary cell wall biosynthesis during wood formation in poplar journal January 2017
Asymmetric expression of a poplar ACC oxidase controls ethylene production during gravitational induction of tension wood journal May 2003
Characterisation of a pine MYB that regulates lignification journal December 2003
Involvement of the R2R3-MYB, AtMYB61, in the ectopic lignification and dark-photomorphogenic components of the det3 mutant phenotype: A MYB links lignification and photomorphogenesis journal December 2003
Ethylene is an endogenous stimulator of cell division in the cambial meristem of Populus journal March 2009
Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants journal December 2010
Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa journal August 2012
Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa journal June 2013
Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa journal October 2017
Nonlinear partial differential equations and applications: Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells journal November 2002
The MYB46/MYB83-mediated transcriptional regulatory programme is a gatekeeper of secondary wall biosynthesis journal July 2014
Identification and allelic dissection uncover roles of lncRNAs in secondary growth of Populus tomentosa journal April 2017
Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis journal November 2000
Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis journal September 2008
R2R3-MYB gene pairs in Populus: evolution and contribution to secondary wall formation and flowering time journal May 2014
Activator- and repressor-type MYB transcription factors are involved in chilling injury induced flesh lignification in loquat via their interactions with the phenylpropanoid pathway journal May 2014
Global Analysis of Direct Targets of Secondary Wall NAC Master Switches in Arabidopsis journal November 2010
MYB83 Is a Direct Target of SND1 and Acts Redundantly with MYB46 in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis journal October 2009
The Poplar MYB Transcription Factors, PtrMYB3 and PtrMYB20, are Involved in the Regulation of Secondary Wall Biosynthesis journal April 2010
Transcriptional Activation of Secondary Wall Biosynthesis by Rice and Maize NAC and MYB Transcription Factors journal September 2011
MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes journal December 2011
PtoMYB92 is a Transcriptional Activator of the Lignin Biosynthetic Pathway During Secondary Cell Wall Formation in Populus tomentosa journal October 2015
Protein S-Nitrosylation Regulates Xylem Vessel Cell Differentiation in Arabidopsis journal October 2017
LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements journal February 2018
Chimeric repressor of PtSND2 severely affects wood formation in transgenic Populus journal August 2013
PtoMYB170 positively regulates lignin deposition during wood formation in poplar and confers drought tolerance in transgenic Arabidopsis journal July 2017
The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways journal September 2003
Transcription switches for protoxylem and metaxylem vessel formation journal August 2005
Interaction of the Arabidopsis E2F and DP Proteins Confers Their Concomitant Nuclear Translocation and Transactivation journal February 2002
Characterization of a Grapevine R2R3-MYB Transcription Factor That Regulates the Phenylpropanoid Pathway journal December 2005
Functional Characterization of Poplar Wood-Associated NAC Domain Transcription Factors journal December 2009
MYB75 Functions in Regulation of Secondary Cell Wall Formation in the Arabidopsis Inflorescence Stem journal August 2010
The Populus Class III HD ZIP, popREVOLUTA , Influences Cambium Initiation and Patterning of Woody Stems journal December 2010
Intron-Mediated Alternative Splicing of WOOD-ASSOCIATED NAC TRANSCRIPTION FACTOR1B Regulates Cell Wall Thickening during Fiber Development in Populus Species journal January 2014
Arabidopsis E2Fc Functions in Cell Division and Is Degraded by the Ubiquitin-SCF AtSKP2 Pathway in Response to Light journal November 2002
MYB61 Is Required for Mucilage Deposition and Extrusion in the Arabidopsis Seed Coat journal December 2001
Novel and Mechanical Stress–Responsive MicroRNAs in Populus trichocarpa That Are Absent from Arabidopsis journal July 2005
The NAC Transcription Factors NST1 and NST2 of Arabidopsis Regulate Secondary Wall Thickenings and Are Required for Anther Dehiscence journal October 2005
The Balance between Cell Division and Endoreplication Depends on E2FC-DPB, Transcription Factors Regulated by the Ubiquitin-SCF SKP2A Pathway in Arabidopsis journal August 2006
NAC Transcription Factors, NST1 and NST3, Are Key Regulators of the Formation of Secondary Walls in Woody Tissues of Arabidopsis journal January 2007
The MYB46 Transcription Factor Is a Direct Target of SND1 and Regulates Secondary Wall Biosynthesis in Arabidopsis journal September 2007
A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis journal October 2008
ASYMMETRIC LEAVES2-LIKE19/LATERAL ORGAN BOUNDARIES DOMAIN30 and ASL20/LBD18 Regulate Tracheary Element Differentiation in Arabidopsis journal December 2008
MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis journal January 2009
VND-INTERACTING2, a NAC Domain Transcription Factor, Negatively Regulates Xylem Vessel Formation in Arabidopsis journal April 2010
Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation journal October 2010
Members of the LATERAL ORGAN BOUNDARIES DOMAIN Transcription Factor Family Are Involved in the Regulation of Secondary Growth in Populus journal November 2010
SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa journal November 2013
LACCASE Is Necessary and Nonredundant with PEROXIDASE for Lignin Polymerization during Vascular Development in Arabidopsis journal October 2013
BEL1-LIKE HOMEODOMAIN6 and KNOTTED ARABIDOPSIS THALIANA7 Interact and Regulate Secondary Cell Wall Formation via Repression of REVOLUTA journal December 2014
AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula journal June 2017
AtMYB32 is required for normal pollen development in Arabidopsis thaliana journal December 2004
microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems: microRNA-directed repression of ATHB15 journal March 2005
EgMYB2, a new transcriptional activator from Eucalyptus xylem, regulates secondary cell wall formation and lignin biosynthesis journal July 2005
TERE; a novel cis-element responsible for a coordinated expression of genes related to programmed cell death and secondary wall formation during differentiation of tracheary elements: Tracheary-element-regulating cis-element journal August 2007
XND1, a member of the NAC domain family in Arabidopsis thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem: XND1 blocks tracheary element differentiation journal October 2007
VASCULAR-RELATED NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots journal August 2008
NAC transcription factors NST1 and NST3 regulate pod shattering in a partially redundant manner by promoting secondary wall formation after the establishment of tissue identity journal December 2008
A unique program for cell death in xylem fibers of Populus stem journal April 2009
Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis journal November 2009
The Populus homeobox gene ARBORKNOX2 regulates cell differentiation during secondary growth: KNOX gene regulation of secondary growth journal December 2009
An NAC transcription factor orchestrates multiple features of cell wall development in Medicago truncatula: Medicago NST gene journal April 2010
ZmMYB31 directly represses maize lignin genes and redirects the phenylpropanoid metabolic flux: ZmMYB31 controls phenylpropanoids journal October 2010
The DUF579 domain containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis: A DUF579 protein affects xylan accumulation journal February 2011
VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation: Direct target genes of VND7 journal March 2011
OVATE FAMILY PROTEIN4 (OFP4) interaction with KNAT7 regulates secondary cell wall formation in Arabidopsis thaliana: KNAT7-OFP complex regulates secondary wall formation journal May 2011
A NAC domain protein family contributing to the regulation of wood formation in poplar: NAC domain protein family regulates wood formation journal June 2011
The E2F transcription factor family regulates CENH3 expression in Arabidopsis thaliana: Regulation of AtCENH3 expression journal August 2011
NAC domain function and transcriptional control of a secondary cell wall master switch: NST1 function and regulation journal October 2011
MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis journal November 2012
Developmental and seasonal expression of PtaHB1 , a Populus gene encoding a class III HD-Zip protein, is closely associated with secondary growth and inversely correlated with the level of microRNA ( miR166 ) journal December 2005
EgMYB1, an R2R3 MYB transcription factor from eucalyptus negatively regulates secondary cell wall formation in Arabidopsis and poplar journal October 2010
The Class II KNOX gene KNAT7 negatively regulates secondary wall formation in Arabidopsis and is functionally conserved in Populus journal January 2012
At MYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network journal June 2012
KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis : KNAT7 positively regulates xylan biosynthesis journal April 2018
A genome-wide screen for ethylene-induced Ethylene Response Factors (ERFs) in hybrid aspen stem identifies ERF genes that modify stem growth and wood properties journal July 2013
Poplar PdC3H17 and PdC3H18 are direct targets of PdMYB3 and PdMYB21, and positively regulate secondary wall formation in Arabidopsis and poplar journal May 2014
XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED journal July 2017
Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus journal July 2018
Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor journal April 2017
PpNAC1 , a main regulator of phenylalanine biosynthesis and utilization in maritime pine journal November 2017
Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis journal February 2018
Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis journal June 2015
Lignin Valorization: Improving Lignin Processing in the Biorefinery journal May 2014
The developing xylem transcriptome and genome-wide analysis of alternative splicing in Populus trichocarpa (black cottonwood) populations journal January 2013
Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca) journal January 2007
Higher plant cellulose synthases journal January 2000
Non-cell-autonomous microRNA165 acts in a dose-dependent manner to regulate multiple differentiation status in the Arabidopsis root journal May 2011
Plant Vascular Cell Division Is Maintained by an Interaction between PXY and Ethylene Signalling journal November 2012
The Populus Class III HD ZIP Transcription Factor POPCORONA Affects Cell Differentiation during Secondary Growth of Woody Stems journal February 2011
The Poplar MYB Master Switches Bind to the SMRE Site and Activate the Secondary Wall Biosynthetic Program during Wood Formation journal July 2013
Functional Characterization of the Poplar R2R3-MYB Transcription Factor PtoMYB216 Involved in the Regulation of Lignin Biosynthesis during Wood Formation journal October 2013
Arabidopsis NAC Domain Proteins, VND1 to VND5, Are Transcriptional Regulators of Secondary Wall Biosynthesis in Vessels journal August 2014
Evolution of Class III Homeodomain–Leucine Zipper Genes in Streptophytes journal February 2006
The Plant Cell Wall: A Complex and Dynamic Structure As Revealed by the Responses of Genes under Stress Conditions journal August 2016
Ethylene-Related Gene Expression Networks in Wood Formation journal March 2018
Current Models for Transcriptional Regulation of Secondary Cell Wall Biosynthesis in Grasses journal April 2018
Increasing fiber length and growth in transgenic tobacco plants overexpressing a gene encoding the Eucalyptus camaldulensis HD-Zip class II transcription factor journal January 2009

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