DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Bioprocess development for muconic acid production from aromatic compounds and lignin

Abstract

Muconic acid (MA) is a bio-based platform chemical that can be converted into the commodity petrochemical building blocks adipic acid or terephthalic acid, or used in emerging, performance-advantaged materials. MA is a metabolic intermediate in the ß-ketoadipate pathway, and can be produced from carbohydrates or other traditional carbon sources via the shikimate pathway. MA can also be produced from lignin-derived aromatic compounds with high atom efficiency through aromatic-catabolic pathways. Metabolic engineering efforts to date have developed efficient muconic acid-producing strains of the aromatic-catabolic microbe Pseudomonas putida KT2440, but the titers, productivities, and yields from aromatic compounds in most cases remain below the thresholds needed for industrially-relevant bioreactor cultivations. To that end, this work presents further process and host development towards improving MA titers, yields, and productivities, using the hydroxycinnamic acids, pcoumaric acid and ferulic acid, as model aromatic compounds. Coupling strain engineering and bioprocess development enabled the discovery of new bottlenecks in P. putida that hinder MA production from these compounds. A combination of gene overexpression and removal of a global catabolic regulator resulted in highyielding strains (100% molar yield). Maximum MA titers of 50 g/L, which is near the lethal toxicity limit in this bacterium, and productivities over 0.5more » g/L/h were achieved in separate process configurations. Additionally, a high-pH feeding strategy, which could potentially reduce the salt load and enable higher titers by decreasing product dilution, was tested with model compounds and lignin-rich streams from corn stover and a complete conversion of the primary monomeric aromatic compounds to MA was demonstrated, obtaining a titer of 4 g/L. Overall, this study presents a step forward for the production of value-added chemicals from lignin and highlights critical needs for further strain improvement and bioprocess development that can be applied in the biological valorization of lignin.« less

Authors:
ORCiD logo [1]; ORCiD logo [1];  [1];  [1];  [1];  [1];  [1]; ORCiD logo [1]
  1. National Renewable Energy Lab. (NREL), Golden, CO (United States)
Publication Date:
Research Org.:
National Renewable Energy Lab. (NREL), Golden, CO (United States)
Sponsoring Org.:
USDOE Office of Energy Efficiency and Renewable Energy (EERE), Sustainable Transportation Office. Bioenergy Technologies Office
OSTI Identifier:
1480230
Alternate Identifier(s):
OSTI ID: 1477891
Report Number(s):
NREL/JA-2A00-72687
Journal ID: ISSN 1463-9262; GRCHFJ
Grant/Contract Number:  
AC36-08GO28308
Resource Type:
Accepted Manuscript
Journal Name:
Green Chemistry
Additional Journal Information:
Journal Volume: 20; Journal Issue: 21; Journal ID: ISSN 1463-9262
Publisher:
Royal Society of Chemistry
Country of Publication:
United States
Language:
English
Subject:
09 BIOMASS FUELS; muconic acid; bioprocessing; aromatic compounds; lignin

Citation Formats

Salvachúa, Davinia, Johnson, Christopher W., Singer, Christine A., Rohrer, Holly, Peterson, Darren J., Black, Brenna A., Knapp, Anna, and Beckham, Gregg T. Bioprocess development for muconic acid production from aromatic compounds and lignin. United States: N. p., 2018. Web. doi:10.1039/C8GC02519C.
Salvachúa, Davinia, Johnson, Christopher W., Singer, Christine A., Rohrer, Holly, Peterson, Darren J., Black, Brenna A., Knapp, Anna, & Beckham, Gregg T. Bioprocess development for muconic acid production from aromatic compounds and lignin. United States. https://doi.org/10.1039/C8GC02519C
Salvachúa, Davinia, Johnson, Christopher W., Singer, Christine A., Rohrer, Holly, Peterson, Darren J., Black, Brenna A., Knapp, Anna, and Beckham, Gregg T. Thu . "Bioprocess development for muconic acid production from aromatic compounds and lignin". United States. https://doi.org/10.1039/C8GC02519C. https://www.osti.gov/servlets/purl/1480230.
@article{osti_1480230,
title = {Bioprocess development for muconic acid production from aromatic compounds and lignin},
author = {Salvachúa, Davinia and Johnson, Christopher W. and Singer, Christine A. and Rohrer, Holly and Peterson, Darren J. and Black, Brenna A. and Knapp, Anna and Beckham, Gregg T.},
abstractNote = {Muconic acid (MA) is a bio-based platform chemical that can be converted into the commodity petrochemical building blocks adipic acid or terephthalic acid, or used in emerging, performance-advantaged materials. MA is a metabolic intermediate in the ß-ketoadipate pathway, and can be produced from carbohydrates or other traditional carbon sources via the shikimate pathway. MA can also be produced from lignin-derived aromatic compounds with high atom efficiency through aromatic-catabolic pathways. Metabolic engineering efforts to date have developed efficient muconic acid-producing strains of the aromatic-catabolic microbe Pseudomonas putida KT2440, but the titers, productivities, and yields from aromatic compounds in most cases remain below the thresholds needed for industrially-relevant bioreactor cultivations. To that end, this work presents further process and host development towards improving MA titers, yields, and productivities, using the hydroxycinnamic acids, pcoumaric acid and ferulic acid, as model aromatic compounds. Coupling strain engineering and bioprocess development enabled the discovery of new bottlenecks in P. putida that hinder MA production from these compounds. A combination of gene overexpression and removal of a global catabolic regulator resulted in highyielding strains (100% molar yield). Maximum MA titers of 50 g/L, which is near the lethal toxicity limit in this bacterium, and productivities over 0.5 g/L/h were achieved in separate process configurations. Additionally, a high-pH feeding strategy, which could potentially reduce the salt load and enable higher titers by decreasing product dilution, was tested with model compounds and lignin-rich streams from corn stover and a complete conversion of the primary monomeric aromatic compounds to MA was demonstrated, obtaining a titer of 4 g/L. Overall, this study presents a step forward for the production of value-added chemicals from lignin and highlights critical needs for further strain improvement and bioprocess development that can be applied in the biological valorization of lignin.},
doi = {10.1039/C8GC02519C},
journal = {Green Chemistry},
number = 21,
volume = 20,
place = {United States},
year = {Thu Oct 11 00:00:00 EDT 2018},
month = {Thu Oct 11 00:00:00 EDT 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 95 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Toward biotechnological production of adipic acid and precursors from biorenewables
journal, August 2013


Environmentally compatible synthesis of adipic acid from D-glucose
journal, January 1994

  • Draths, Karen M.; Frost, John W.
  • Journal of the American Chemical Society, Vol. 116, Issue 1, p. 399-400
  • DOI: 10.1021/ja00080a057

Biotechnological production of muconic acid: current status and future prospects
journal, May 2014


Adipic acid production from lignin
journal, January 2015

  • Vardon, Derek R.; Franden, Mary Ann; Johnson, Christopher W.
  • Energy & Environmental Science, Vol. 8, Issue 2
  • DOI: 10.1039/C4EE03230F

Chemicals from lignin: an interplay of lignocellulose fractionation, depolymerisation, and upgrading
journal, January 2018

  • Schutyser, W.; Renders, T.; Van den Bosch, S.
  • Chemical Society Reviews, Vol. 47, Issue 3
  • DOI: 10.1039/C7CS00566K

Combining Metabolic Engineering and Electrocatalysis: Application to the Production of Polyamides from Sugar
journal, January 2016

  • Suastegui, Miguel; Matthiesen, John E.; Carraher, Jack M.
  • Angewandte Chemie International Edition, Vol. 55, Issue 7
  • DOI: 10.1002/anie.201509653

Renewable Unsaturated Polyesters from Muconic Acid
journal, October 2016

  • Rorrer, Nicholas A.; Dorgan, John R.; Vardon, Derek R.
  • ACS Sustainable Chemistry & Engineering, Vol. 4, Issue 12
  • DOI: 10.1021/acssuschemeng.6b01820

Biomass-derived monomers for performance-differentiated fiber reinforced polymer composites
journal, January 2017

  • Rorrer, Nicholas A.; Vardon, Derek R.; Dorgan, John R.
  • Green Chemistry, Vol. 19, Issue 12
  • DOI: 10.1039/C7GC00320J

Bioprivileged molecules: creating value from biomass
journal, January 2017

  • Shanks, Brent H.; Keeling, Peter L.
  • Green Chemistry, Vol. 19, Issue 14
  • DOI: 10.1039/C7GC00296C

Biosynthesis of cis, cis-Muconic Acid and Its Aromatic Precursors, Catechol and Protocatechuic Acid, from Renewable Feedstocks by Saccharomyces cerevisiae
journal, September 2012

  • Weber, Christian; Brückner, Christine; Weinreb, Sheila
  • Applied and Environmental Microbiology, Vol. 78, Issue 23, p. 8421-8430
  • DOI: 10.1128/AEM.01983-12

Metabolic engineering of muconic acid production in Saccharomyces cerevisiae
journal, January 2013


Enhancing muconic acid production from glucose and lignin-derived aromatic compounds via increased protocatechuate decarboxylase activity
journal, December 2016

  • Johnson, Christopher W.; Salvachúa, Davinia; Khanna, Payal
  • Metabolic Engineering Communications, Vol. 3
  • DOI: 10.1016/j.meteno.2016.04.002

Lignin Valorization: Improving Lignin Processing in the Biorefinery
journal, May 2014

  • Ragauskas, A. J.; Beckham, G. T.; Biddy, M. J.
  • Science, Vol. 344, Issue 6185, p. 1246843-1246843
  • DOI: 10.1126/science.1246843

Opportunities and challenges in biological lignin valorization
journal, December 2016


Catalytic Biorefining of Plant Biomass to Non-Pyrolytic Lignin Bio-Oil and Carbohydrates through Hydrogen Transfer Reactions
journal, June 2014

  • Ferrini, Paola; Rinaldi, Roberto
  • Angewandte Chemie International Edition, Vol. 53, Issue 33
  • DOI: 10.1002/anie.201403747

The Catalytic Valorization of Lignin for the Production of Renewable Chemicals
journal, June 2010

  • Zakzeski, Joseph; Bruijnincx, Pieter C. A.; Jongerius, Anna L.
  • Chemical Reviews, Vol. 110, Issue 6, p. 3552-3599
  • DOI: 10.1021/cr900354u

Base-Catalyzed Depolymerization of Solid Lignin-Rich Streams Enables Microbial Conversion
journal, August 2017

  • Rodriguez, Alberto; Salvachúa, Davinia; Katahira, Rui
  • ACS Sustainable Chemistry & Engineering, Vol. 5, Issue 9
  • DOI: 10.1021/acssuschemeng.7b01818

Enhancement of protocatechuate decarboxylase activity for the effective production of muconate from lignin-related aromatic compounds
journal, December 2014


Eliminating a global regulator of carbon catabolite repression enhances the conversion of aromatic lignin monomers to muconate in Pseudomonas putida KT2440
journal, December 2017

  • Johnson, Christopher W.; Abraham, Paul E.; Linger, Jeffrey G.
  • Metabolic Engineering Communications, Vol. 5
  • DOI: 10.1016/j.meteno.2017.05.002

High-yield Production of cis , cis -Muconic Acid from Catechol in Aqueous Solution by Biocatalyst
journal, April 2011

  • Kaneko, Aya; Ishii, Yoshitaka; Kirimura, Kohtaro
  • Chemistry Letters, Vol. 40, Issue 4
  • DOI: 10.1246/cl.2011.381

From lignin to nylon: Cascaded chemical and biochemical conversion using metabolically engineered Pseudomonas putida
journal, May 2018


Metabolic engineering of Corynebacterium glutamicum for the production of cis, cis-muconic acid from lignin
journal, July 2018


Enhanced production of cis,cis-muconate in a cell-recycle bioreactor
journal, January 1997


pH-stat fed-batch process to enhance the production of cis, cis-muconate from benzoate by Pseudomonas putida KT2440-JD1
journal, September 2011

  • van Duuren, Jozef B. J. H.; Wijte, Dorien; Karge, Bianka
  • Biotechnology Progress, Vol. 28, Issue 1
  • DOI: 10.1002/btpr.709

DO-stat fed-batch production of cis, cis-muconic acid from benzoic acid by Pseudomonas putida BM014
journal, January 1995


cis,cis-Muconic acid: separation and catalysis to bio-adipic acid for nylon-6,6 polymerization
journal, January 2016

  • Vardon, Derek R.; Rorrer, Nicholas A.; Salvachúa, Davinia
  • Green Chemistry, Vol. 18, Issue 11
  • DOI: 10.1039/C5GC02844B

Microbial production of cis, cis-muconic acid from benzoic acid
journal, March 1988

  • Mizuno, Sumiko; Yoshikawa, Nobuji; Seki, Minoru
  • Applied Microbiology and Biotechnology, Vol. 28, Issue 1
  • DOI: 10.1007/BF00250491

Glucose-Free cis , cis -Muconic Acid Production via New Metabolic Designs Corresponding to the Heterogeneity of Lignin
journal, November 2017


Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals
journal, August 2017


Lignin valorization through integrated biological funneling and chemical catalysis
journal, August 2014

  • Linger, J. G.; Vardon, D. R.; Guarnieri, M. T.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 33, p. 12013-12018
  • DOI: 10.1073/pnas.1410657111

Towards lignin consolidated bioprocessing: simultaneous lignin depolymerization and product generation by bacteria
journal, January 2015

  • Salvachúa, Davinia; Karp, Eric M.; Nimlos, Claire T.
  • Green Chemistry, Vol. 17, Issue 11
  • DOI: 10.1039/C5GC01165E

Hydroxycinnamates in lignification
journal, August 2009


Genome-wide identification of tolerance mechanisms toward p -coumaric acid in Pseudomonas putida
journal, November 2017

  • Calero, Patricia; Jensen, Sheila I.; Bojanovič, Klara
  • Biotechnology and Bioengineering, Vol. 115, Issue 3
  • DOI: 10.1002/bit.26495

Lignin depolymerization by fungal secretomes and a microbial sink
journal, January 2016

  • Salvachúa, Davinia; Katahira, Rui; Cleveland, Nicholas S.
  • Green Chemistry, Vol. 18, Issue 22
  • DOI: 10.1039/C6GC01531J

Base-Catalyzed Depolymerization of Biorefinery Lignins
journal, December 2015


Quantification of acidic compounds in complex biomass-derived streams
journal, January 2016

  • Karp, Eric M.; Nimlos, Claire T.; Deutch, Steve
  • Green Chemistry, Vol. 18, Issue 17
  • DOI: 10.1039/C6GC00868B

Gradient Elution Moving Boundary Electrophoresis Enables Rapid Analysis of Acids in Complex Biomass-Derived Streams
journal, October 2016

  • Munson, Matthew S.; Karp, Eric M.; Nimlos, Claire T.
  • ACS Sustainable Chemistry & Engineering, Vol. 4, Issue 12
  • DOI: 10.1021/acssuschemeng.6b02076

A protocatechuate biosensor for Pseudomonas putida KT2440 via promoter and protein evolution
journal, June 2018


Pseudomonas putida KT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways
journal, September 2015

  • Nikel, Pablo I.; Chavarría, Max; Fuhrer, Tobias
  • Journal of Biological Chemistry, Vol. 290, Issue 43
  • DOI: 10.1074/jbc.M115.687749

Chemical properties of catechols and their molecular modes of toxic action in cells, from microorganisms to mammals. Minireview
journal, February 2001


Understanding biocatalyst inhibition by carboxylic acids
journal, January 2013


Thermochemical wastewater valorization via enhanced microbial toxicity tolerance
journal, January 2018

  • Jayakody, Lahiru N.; Johnson, Christopher W.; Whitham, Jason M.
  • Energy & Environmental Science, Vol. 11, Issue 6
  • DOI: 10.1039/C8EE00460A

Engineering Escherichia coli membrane phospholipid head distribution improves tolerance and production of biorenewables
journal, November 2017


Mechanisms of Solvent Tolerance in Gram-Negative Bacteria
journal, October 2002


Metabolic engineering strategies to bio-adipic acid production
journal, June 2017


Systems biology-guided biodesign of consolidated lignin conversion
journal, January 2016

  • Lin, Lu; Cheng, Yanbing; Pu, Yunqiao
  • Green Chemistry, Vol. 18, Issue 20
  • DOI: 10.1039/C6GC01131D

Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin
journal, March 2015


Combining Metabolic Engineering and Electrocatalysis: Application to the Production of Polyamides from Sugar
journal, January 2016

  • Suastegui, Miguel; Matthiesen, John E.; Carraher, Jack M.
  • Angewandte Chemie, Vol. 128, Issue 7
  • DOI: 10.1002/ange.201509653

Catalytic Biorefining of Plant Biomass to Non-Pyrolytic Lignin Bio-Oil and Carbohydrates through Hydrogen Transfer Reactions
journal, June 2014


Works referencing / citing this record:

Engineering electrochemical CO 2 reduction to formate under bioprocess‐compatible conditions to bioreactor scale
journal, July 2019

  • Hegner, Richard; Neubert, Katharina; Rosa, Luis F. M.
  • ChemElectroChem, Vol. 6, Issue 14
  • DOI: 10.1002/celc.201900526

Isolation of a novel platform bacterium for lignin valorization and its application in glucose-free cis,cis-muconate production
journal, May 2019

  • Shinoda, Eri; Takahashi, Kenji; Abe, Nanase
  • Journal of Industrial Microbiology & Biotechnology, Vol. 46, Issue 8
  • DOI: 10.1007/s10295-019-02190-6

Promoting microbial utilization of phenolic substrates from bio-oil
journal, July 2019

  • Davis, Kirsten; Rover, Marjorie R.; Salvachúa, Davinia
  • Journal of Industrial Microbiology & Biotechnology, Vol. 46, Issue 11
  • DOI: 10.1007/s10295-019-02208-z

Muconic acid production from methane using rationally-engineered methanotrophic biocatalysts
journal, January 2019

  • Henard, Calvin A.; Akberdin, Ilya R.; Kalyuzhnaya, Marina G.
  • Green Chemistry, Vol. 21, Issue 24
  • DOI: 10.1039/c9gc03722e

Passive membrane transport of lignin-related compounds
journal, October 2019

  • Vermaas, Josh V.; Dixon, Richard A.; Chen, Fang
  • Proceedings of the National Academy of Sciences, Vol. 116, Issue 46
  • DOI: 10.1073/pnas.1904643116

Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin
journal, January 2020

  • Salvachúa, Davinia; Rydzak, Thomas; Auwae, Raquel
  • Microbial Biotechnology, Vol. 13, Issue 1
  • DOI: 10.1111/1751-7915.13481

Recent advances in lignin valorization with bacterial cultures: microorganisms, metabolic pathways, and bio-products
journal, February 2019


Development of Rhodococcus opacus as a chassis for lignin valorization and bioproduction of high-value compounds
journal, August 2019

  • Anthony, Winston E.; Carr, Rhiannon R.; DeLorenzo, Drew M.
  • Biotechnology for Biofuels, Vol. 12, Issue 1
  • DOI: 10.1186/s13068-019-1535-3