Title: Cryo-EM structure of the human neutral amino acid transporter ASCT2

Journal Article · · Nature Structural & Molecular Biology

Human ASCT2 belongs to the SLC1 family of secondary transporters and is specific for the transport of small neutral amino acids. ASCT2 is upregulated in cancer cells and serves as the receptor for many retroviruses; hence, it has importance as a potential drug target. Here we used single-particle cryo-EM to determine a structure of the functional and unmodified human ASCT2 at 3.85-Å resolution. ASCT2 forms a homotrimeric complex in which each subunit contains a transport and a scaffold domain. Prominent extracellular extensions on the scaffold domain form the predicted docking site for retroviruses. Relative to structures of other SLC1 members, ASCT2 is in the most extreme inward-oriented state, with the transport domain largely detached from the central scaffold domain on the cytoplasmic side. In conclusion, this domain detachment may be required for substrate binding and release on the intracellular side of the membrane.

Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
AC02-76SF00515
OSTI ID:
1475494
Journal Information:
Nature Structural & Molecular Biology, Journal Name: Nature Structural & Molecular Biology Journal Issue: 6 Vol. 25; ISSN 1545-9993
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English

References (59)

Targeting glutamine transport to suppress melanoma cell growth: Targeting Glutamine Transport to Suppress Melanoma Cell Growth journal February 2014
Targeting ASCT2-mediated glutamine uptake blocks prostate cancer growth and tumour development: Regulation of glutamine transport in prostate cancer journal April 2015
Transport mechanism and regulatory properties of the human amino acid transporter ASCT2 (SLC1A5) journal July 2014
Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen journal August 2020
The solute carrier SLC7A8 is a marker of favourable prognosis in ER-positive low proliferative invasive breast cancer journal March 2020
Glutamate uptake journal September 2001
N-linked Glycosylation of human SLC1A5 (ASCT2) transporter is critical for trafficking to membrane journal July 2015
Large scale production of the active human ASCT2 (SLC1A5) transporter in Pichia pastoris — functional and kinetic asymmetry revealed in proteoliposomes journal September 2013
Optimal Determination of Particle Orientation, Absolute Hand, and Contrast Loss in Single-particle Electron Cryomicroscopy journal October 2003
CTFFIND4: Fast and accurate defocus estimation from electron micrographs journal November 2015
Focus: The interface between data collection and data processing in cryo-EM journal May 2017
The SLC1 high-affinity glutamate and neutral amino acid transporter family journal April 2013
High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy journal December 2013
Active transport of L-glutamate by membrane vesicles isolated from rat brain journal September 1978
Flux coupling in a neuronal glutamate transporter journal October 1996
ASC amino-acid transporter 2 (ASCT2) as a novel prognostic marker in non-small cell lung cancer journal March 2014
Structure of a glutamate transporter homologue from Pyrococcus horikoshii journal October 2004
Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter journal January 2007
Transport mechanism of a bacterial homologue of glutamate transporters journal November 2009
Transport domain unlocking sets the uptake rate of an aspartate transporter journal February 2015
Structure and allosteric inhibition of excitatory amino acid transporter 1 journal April 2017
Structural insight in the toppling mechanism of an energy-coupling factor transporter journal March 2016
Coupled binding mechanism of three sodium ions and aspartate in the glutamate transporter homologue GltTk journal November 2016
Prevention of overfitting in cryo-EM structure determination journal July 2012
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy journal February 2017
Membrane reconstitution of ABC transporters and assays of translocator function journal January 2008
Crystal structure of a substrate-free aspartate transporter journal September 2013
Crystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters journal February 2016
ASCT2/SLC1A5 controls glutamine uptake and tumour growth in triple-negative basal-like breast cancer journal October 2015
Structural characterisation reveals insights into substrate recognition by the glutamine transporter ASCT2/SLC1A5 journal January 2018
Cavin1 intrinsically disordered domains are essential for fuzzy electrostatic interactions and caveola formation journal February 2021
Below 3 Å structure of apoferritin using a multipurpose TEM with a side entry cryoholder journal April 2021
Neutral amino acid transporter ASCT2 displays substrate-induced Na+ exchange and a substrate-gated anion conductance journal March 2000
Neutral amino acid transporter ASCT2 displays substrate-induced Na+ exchange and a substrate-gated anion conductance journal March 2000
Inward-facing conformation of glutamate transporters as revealed by their inverted-topology structural repeats journal November 2009
Cloning and Functional Characterization of a System ASC-like Na + -dependent Neutral Amino Acid Transporter journal June 1996
Arginine 447 Plays a Pivotal Role in Substrate Interactions in a Neuronal Glutamate Transporter journal September 2000
Deletion of Amino Acid Transporter ASCT2 (SLC1A5) Reveals an Essential Role for Transporters SNAT1 (SLC38A1) and SNAT2 (SLC38A2) to Sustain Glutaminolysis in Cancer Cells journal April 2016
Voltage-dependent processes in the electroneutral amino acid exchanger ASCT2 journal May 2013
Analysis of the quality of crystallographic data and the limitations of structural models journal October 2017
Stock-based detection of protein oligomeric states in jsPISA journal April 2015
Characterization of feline ASCT1 and ASCT2 as RD-114 virus receptor journal April 2013
geopandas/geopandas: v0.8.1 posted_content July 2020
Coot model-building tools for molecular graphics journal November 2004
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
Simian Retrovirus 4 Induces Lethal Acute Thrombocytopenia in Japanese Macaques journal January 2015
A Sodium-Dependent Neutral-Amino-Acid Transporter Mediates Infections of Feline and Baboon Endogenous Retroviruses and Simian Type D Retroviruses journal May 1999
The Envelope Glycoprotein of Human Endogenous Retrovirus Type W Uses a Divergent Family of Amino Acid Transporters/Cell Surface Receptors journal July 2002
N-Linked Glycosylation and Sequence Changes in a Critical Negative Control Region of the ASCT1 and ASCT2 Neutral Amino Acid Transporters Determine Their Retroviral Receptor Functions journal March 2003
Structural Features of the Glutamate Transporter Family journal June 1999
Shared Molecular Mechanisms of Membrane Transporters journal June 2016
Expression of glutamine metabolism-related proteins according to molecular subtype of breast cancer journal March 2013
PHENIX: a comprehensive Python-based system for macromolecular structure solution. text January 2010
Membrane transporters for the special amino acid glutamine: structure/function relationships and relevance to human health journal August 2014
Clinical Role of ASCT2 (SLC1A5) in KRAS-Mutated Colorectal Cancer journal July 2017
Mechanism of Na+-dependent citrate transport from the structure of an asymmetrical CitS dimer journal December 2015
Sampling the conformational space of the catalytic subunit of human γ-secretase journal December 2015
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 journal November 2016

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