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Title: Spatial Structuring of Cellulase Gene Abundance and Activity in Soil

Authors:
; ; ; ; ; ;
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1475223
Grant/Contract Number:  
SC0010775
Resource Type:
Published Article
Journal Name:
Frontiers in Environmental Science
Additional Journal Information:
Journal Name: Frontiers in Environmental Science Journal Volume: 6; Journal ID: ISSN 2296-665X
Publisher:
Frontiers Media SA
Country of Publication:
Switzerland
Language:
English

Citation Formats

Choi, Jinlyung, Bach, Elizabeth, Lee, Jaejin, Flater, Jared, Dooley, Shane, Howe, Adina, and Hofmockel, Kirsten S. Spatial Structuring of Cellulase Gene Abundance and Activity in Soil. Switzerland: N. p., 2018. Web. doi:10.3389/fenvs.2018.00107.
Choi, Jinlyung, Bach, Elizabeth, Lee, Jaejin, Flater, Jared, Dooley, Shane, Howe, Adina, & Hofmockel, Kirsten S. Spatial Structuring of Cellulase Gene Abundance and Activity in Soil. Switzerland. doi:10.3389/fenvs.2018.00107.
Choi, Jinlyung, Bach, Elizabeth, Lee, Jaejin, Flater, Jared, Dooley, Shane, Howe, Adina, and Hofmockel, Kirsten S. Tue . "Spatial Structuring of Cellulase Gene Abundance and Activity in Soil". Switzerland. doi:10.3389/fenvs.2018.00107.
@article{osti_1475223,
title = {Spatial Structuring of Cellulase Gene Abundance and Activity in Soil},
author = {Choi, Jinlyung and Bach, Elizabeth and Lee, Jaejin and Flater, Jared and Dooley, Shane and Howe, Adina and Hofmockel, Kirsten S.},
abstractNote = {},
doi = {10.3389/fenvs.2018.00107},
journal = {Frontiers in Environmental Science},
number = ,
volume = 6,
place = {Switzerland},
year = {2018},
month = {10}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.3389/fenvs.2018.00107

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Works referenced in this record:

Soil macroaggregate turnover and microaggregate formation: a mechanism for C sequestration under no-tillage agriculture
journal, December 2000


Activities of extracellular enzymes in physically isolated fractions of restored grassland soils
journal, November 2006


Glycoside Hydrolases across Environmental Microbial Communities
journal, December 2016


Beyond biogeographic patterns: processes shaping the microbial landscape
journal, May 2012

  • Hanson, China A.; Fuhrman, Jed A.; Horner-Devine, M. Claire
  • Nature Reviews Microbiology, Vol. 10, Issue 7
  • DOI: 10.1038/nrmicro2795

Above- and Belowground Growth, Biomass, and Nitrogen Use in Maize and Reconstructed Prairie Cropping Systems
journal, January 2015


Microbial Cellulose Utilization: Fundamentals and Biotechnology
journal, September 2002

  • Lynd, L. R.; Weimer, P. J.; van Zyl, W. H.
  • Microbiology and Molecular Biology Reviews, Vol. 66, Issue 3, p. 506-577
  • DOI: 10.1128/MMBR.66.3.506-577.2002

Top-down control of soil fungal community composition by a globally distributed keystone consumer
journal, November 2013

  • Crowther, Thomas W.; Stanton, David W. G.; Thomas, Stephen M.
  • Ecology, Vol. 94, Issue 11
  • DOI: 10.1890/13-0197.1

KEGG: new perspectives on genomes, pathways, diseases and drugs
journal, November 2016

  • Kanehisa, Minoru; Furumichi, Miho; Tanabe, Mao
  • Nucleic Acids Research, Vol. 45, Issue D1
  • DOI: 10.1093/nar/gkw1092

Microbial diversity of cellulose hydrolysis
journal, June 2011


A time for every season: soil aggregate turnover stimulates decomposition and reduces carbon loss in grasslands managed for bioenergy
journal, June 2015

  • Bach, Elizabeth M.; Hofmockel, Kirsten S.
  • GCB Bioenergy, Vol. 8, Issue 3
  • DOI: 10.1111/gcbb.12267

Resource availability influences the diversity of a functional group of heterotrophic soil bacteria
journal, September 2008


Organic matter and water-stable aggregates in soils
journal, June 1982


Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses
journal, February 2017

  • Montella, Salvatore; Ventorino, Valeria; Lombard, Vincent
  • Scientific Reports, Vol. 7, Issue 1
  • DOI: 10.1038/srep42623

Kinetics of short-term carbon mineralization in roots of biofuel crops in soils
journal, October 2013


Response of Soil Properties and Microbial Communities to Agriculture: Implications for Primary Productivity and Soil Health Indicators
journal, July 2016

  • Trivedi, Pankaj; Delgado-Baquerizo, Manuel; Anderson, Ian C.
  • Frontiers in Plant Science, Vol. 7
  • DOI: 10.3389/fpls.2016.00990

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems
journal, July 2014


Genomic Potential for Polysaccharide Deconstruction in Bacteria
journal, December 2014

  • Berlemont, Renaud; Martiny, Adam C.
  • Applied and Environmental Microbiology, Vol. 81, Issue 4
  • DOI: 10.1128/AEM.03718-14

Consequences of changing biodiversity
journal, May 2000

  • Chapin III, F. Stuart; Zavaleta, Erika S.; Eviner, Valerie T.
  • Nature, Vol. 405, Issue 6783
  • DOI: 10.1038/35012241

Distribution and diversity of enzymes for polysaccharide degradation in fungi
journal, March 2017


Disconnect of microbial structure and function: enzyme activities and bacterial communities in nascent stream corridors
journal, October 2011


Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States
journal, October 2013


Soil aggregate isolation method affects measures of intra-aggregate extracellular enzyme activity
journal, February 2014


Stoichiometry of soil enzyme activity at global scale: Stoichiometry of soil enzyme activity
journal, September 2008


Exploring the enzymatic landscape: distribution and kinetics of hydrolytic enzymes in soil particle-size fractions
journal, January 2005


Community niche predicts the functioning of denitrifying bacterial assemblages
journal, December 2009

  • Salles, Joana F.; Poly, Franck; Schmid, Bernhard
  • Ecology, Vol. 90, Issue 12
  • DOI: 10.1890/09-0188.1

Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil
journal, November 2016


Characterization of extracellular cellulose-degrading enzymes from Bacillus thuringiensis strains
journal, May 2012


Agricultural constraints on microbial resource use and niche breadth in drainage ditches
journal, January 2017

  • Hunting, Ellard R.; Barmentlo, S. Henrik; Schrama, Maarten
  • PeerJ, Vol. 5
  • DOI: 10.7717/peerj.4175

The Niche Concept Revisited: Mechanistic Models and Community Context
journal, July 1995


The biological degradation of cellulose
journal, January 1994


Measurements of microbial community activities in individual soil macroaggregates
journal, May 2012


Endemism and functional convergence across the North American soil mycobiome
journal, April 2014

  • Talbot, J. M.; Bruns, T. D.; Taylor, J. W.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 17
  • DOI: 10.1073/pnas.1402584111

Coupled Carbon and Nitrogen Inputs Increase Microbial Biomass and Activity in Prairie Bioenergy Systems
journal, January 2015


Greatest soil microbial diversity found in micro-habitats
journal, March 2018


Soil enzyme activities, microbial communities, and carbon and nitrogen availability in organic agroecosystems across an intensively-managed agricultural landscape
journal, January 2014


Long-term plant growth legacies overwhelm short-term plant growth effects on soil microbial community structure
journal, April 2011


Cellobiose phosphorylase (EC 2.4.1.20) of Cellulomonas: occurrence, induction, and its role in cellobiose metabolism
journal, September 1983

  • Schimz, Karl. -L.; Broll, Birgitt; John, Birgit
  • Archives of Microbiology, Vol. 135, Issue 4
  • DOI: 10.1007/BF00413475

Linking microbial community structure to β-glucosidic function in soil aggregates
journal, May 2013

  • Bailey, Vanessa L.; Fansler, Sarah J.; Stegen, James C.
  • The ISME Journal, Vol. 7, Issue 10
  • DOI: 10.1038/ismej.2013.87

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
journal, December 2014


phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
journal, April 2013


Sources and composition of soil organic matter fractions between and within soil aggregates
journal, December 2001