X-ray Raman scattering: a new in situ probe of molecular structure during nucleation and crystallization from liquid solutions
Abstract
X-ray Raman scattering (XRS) has been used for in situ probing of solute molecule speciation in solution during cooling crystallization. The C and N K-edges of aqueous imidazole were measured as a function of temperature to monitor the transition from the undersaturated state through supersaturation to crystallization. A new jacketed-vessel crystallizer with internal flow was used, which enables thermal control and minimizes radiation damage. We have demonstrated that the C and N K-edges of imidazole are sensitive to changes in local bonding. In line with this, an abrupt change in the N K-edge fine structure indicates the onset of desolvation and crystallization from the supersaturated solution. In contrast, negligible changes are observed in the C and N K-edge spectra acquired during cooling, indicating that the average solvation structure around imidazole molecules does not change significantly while traversing the thermodynamically metastable supersaturated zone. To the best of our knowledge this is the first time X-ray Raman scattering has been used for studying molecular speciation in organic aqueous solutions during crystallization. Time-dependent density functional theory (TD-DFT) calculations of the near-edge spectra were performed using implicit, explicit and combined solvation models to elucidate the likely binding sites of the water molecules. An explicitmore »
- Authors:
-
- School of Chemical and Process Engineering, University of Leeds, Leeds LS2 9JT, UK, Diamond Light Source Ltd.
- Diamond Light Source Ltd., Didcot, UK
- Advanced Photon Source, Argonne National Laboratory, Argonne, USA
- School of Design, The University of Leeds, Leeds LS2 9JT, UK
- School of Chemical and Process Engineering, University of Leeds, Leeds LS2 9JT, UK, Department of Physics
- Publication Date:
- Research Org.:
- Argonne National Lab. (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- USDOE; AstraZeneca PLC.; Diamond Light Source, UK
- OSTI Identifier:
- 1474755
- Alternate Identifier(s):
- OSTI ID: 1486882
- Grant/Contract Number:
- AC02-06CH11357
- Resource Type:
- Published Article
- Journal Name:
- CrystEngComm
- Additional Journal Information:
- Journal Name: CrystEngComm Journal Volume: 20 Journal Issue: 43; Journal ID: ISSN 1466-8033
- Publisher:
- Royal Society of Chemistry (RSC)
- Country of Publication:
- United Kingdom
- Language:
- English
- Subject:
- 74 ATOMIC AND MOLECULAR PHYSICS
Citation Formats
Al-Madhagi, Laila H., Chang, Sin-Yuen, Balasubramanian, Mahalingam, Kroner, Anna B., Shotton, Elizabeth J., Willneff, Elizabeth A., Mishra, Bhoopesh, and Schroeder, Sven L. M. X-ray Raman scattering: a new in situ probe of molecular structure during nucleation and crystallization from liquid solutions. United Kingdom: N. p., 2018.
Web. doi:10.1039/C8CE00929E.
Al-Madhagi, Laila H., Chang, Sin-Yuen, Balasubramanian, Mahalingam, Kroner, Anna B., Shotton, Elizabeth J., Willneff, Elizabeth A., Mishra, Bhoopesh, & Schroeder, Sven L. M. X-ray Raman scattering: a new in situ probe of molecular structure during nucleation and crystallization from liquid solutions. United Kingdom. https://doi.org/10.1039/C8CE00929E
Al-Madhagi, Laila H., Chang, Sin-Yuen, Balasubramanian, Mahalingam, Kroner, Anna B., Shotton, Elizabeth J., Willneff, Elizabeth A., Mishra, Bhoopesh, and Schroeder, Sven L. M. Mon .
"X-ray Raman scattering: a new in situ probe of molecular structure during nucleation and crystallization from liquid solutions". United Kingdom. https://doi.org/10.1039/C8CE00929E.
@article{osti_1474755,
title = {X-ray Raman scattering: a new in situ probe of molecular structure during nucleation and crystallization from liquid solutions},
author = {Al-Madhagi, Laila H. and Chang, Sin-Yuen and Balasubramanian, Mahalingam and Kroner, Anna B. and Shotton, Elizabeth J. and Willneff, Elizabeth A. and Mishra, Bhoopesh and Schroeder, Sven L. M.},
abstractNote = {X-ray Raman scattering (XRS) has been used for in situ probing of solute molecule speciation in solution during cooling crystallization. The C and N K-edges of aqueous imidazole were measured as a function of temperature to monitor the transition from the undersaturated state through supersaturation to crystallization. A new jacketed-vessel crystallizer with internal flow was used, which enables thermal control and minimizes radiation damage. We have demonstrated that the C and N K-edges of imidazole are sensitive to changes in local bonding. In line with this, an abrupt change in the N K-edge fine structure indicates the onset of desolvation and crystallization from the supersaturated solution. In contrast, negligible changes are observed in the C and N K-edge spectra acquired during cooling, indicating that the average solvation structure around imidazole molecules does not change significantly while traversing the thermodynamically metastable supersaturated zone. To the best of our knowledge this is the first time X-ray Raman scattering has been used for studying molecular speciation in organic aqueous solutions during crystallization. Time-dependent density functional theory (TD-DFT) calculations of the near-edge spectra were performed using implicit, explicit and combined solvation models to elucidate the likely binding sites of the water molecules. An explicit solvation model with one water molecule coordinating each nitrogen moiety in the imidazole ring accurately reproduces the peak positions and intensities of the XRS spectra of aqueous imidazole solution.},
doi = {10.1039/C8CE00929E},
journal = {CrystEngComm},
number = 43,
volume = 20,
place = {United Kingdom},
year = {Mon Nov 05 00:00:00 EST 2018},
month = {Mon Nov 05 00:00:00 EST 2018}
}
https://doi.org/10.1039/C8CE00929E
Web of Science
Figures / Tables:
Works referenced in this record:
The Relationship between Solution Structure and Crystal Nucleation: A Neutron Scattering Study of Supersaturated Methanolic Solutions of Benzoic Acid
journal, July 2010
- Burton, R. C.; Ferrari, E. S.; Davey, R. J.
- The Journal of Physical Chemistry B, Vol. 114, Issue 26
ATHENA , ARTEMIS , HEPHAESTUS : data analysis for X-ray absorption spectroscopy using IFEFFIT
journal, June 2005
- Ravel, B.; Newville, M.
- Journal of Synchrotron Radiation, Vol. 12, Issue 4
Imidazole, a New Tunable Reagent for Producing Nanocellulose, Part I: Xylan-Coated CNCs and CNFs
journal, September 2017
- Mao, Jia; Abushammala, Hatem; Hettegger, Hubert
- Polymers, Vol. 9, Issue 12
Nucleation of NaCl from Aqueous Solution: Critical Sizes, Ion-Attachment Kinetics, and Rates
journal, October 2015
- Zimmermann, Nils E. R.; Vorselaars, Bart; Quigley, David
- Journal of the American Chemical Society, Vol. 137, Issue 41
Self-association of organic solutes in solution: a NEXAFS study of aqueous imidazole
journal, January 2015
- Thomason, M. J.; Seabourne, C. R.; Sattelle, B. M.
- Faraday Discussions, Vol. 179
X-Ray Raman Spectroscopic Study of Water in the Condensed Phases
journal, March 2008
- Tse, John S.; Shaw, Dawn M.; Klug, Dennis D.
- Physical Review Letters, Vol. 100, Issue 9
The ORCA program system: The ORCA program system
journal, June 2011
- Neese, Frank
- Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 2, Issue 1
Molecular aggregation phenomena in solution: an energy dispersive X-ray diffraction study of concentrated imidazole water solutions
journal, February 1999
- Gontrani, Lorenzo; Caminiti, Ruggero; Bencivenni, Luigi
- Chemical Physics Letters, Vol. 301, Issue 1-2
Detection and characterisation of sub-critical nuclei during reactive Pd metal nucleation by X-ray absorption spectroscopy
journal, January 2016
- Chang, S. -Y.; Gründer, Y.; Booth, S. G.
- CrystEngComm, Vol. 18, Issue 5
NEXAFS Sensitivity to Bond Lengths in Complex Molecular Materials: A Study of Crystalline Saccharides
journal, November 2015
- Gainar, Adrian; Stevens, Joanna S.; Jaye, Cherno
- The Journal of Physical Chemistry B, Vol. 119, Issue 45
The LERIX User Facility
conference, January 2007
- Seidler, G. T.; Fister, T. T.; Cross, J. O.
- X-RAY ABSORPTION FINE STRUCTURE - XAFS13: 13th International Conference, AIP Conference Proceedings
In situ XAFS Study of Palladium Electrodeposition at the Liquid/Liquid Interface
journal, May 2017
- Booth, Samuel G.; Chang, Sin-Yuen; Uehara, Akihiro
- Electrochimica Acta, Vol. 235
Intermolecular bonding of hemin in solution and in solid state probed by N K-edge X-ray spectroscopies
journal, January 2015
- Golnak, Ronny; Xiao, Jie; Atak, Kaan
- Physical Chemistry Chemical Physics, Vol. 17, Issue 43
Solubilities, Partition Coefficients, Density, and Surface Tension for Imidazoles + Octan-1-ol or + Water or + n -Decane †
journal, May 2002
- Domańska, Urszula; Kozłowska, Marta Karolina; Rogalski, Marek
- Journal of Chemical & Engineering Data, Vol. 47, Issue 3
Pseudoequivalent Nitrogen Atoms in Aqueous Imidazole Distinguished by Chemical Shifts in Photoelectron Spectroscopy
journal, July 2008
- Nolting, Dirk; Ottosson, Niklas; Faubel, Manfred
- Journal of the American Chemical Society, Vol. 130, Issue 26
Femtosecond X-ray protein nanocrystallography
journal, February 2011
- Chapman, Henry N.; Fromme, Petra; Barty, Anton
- Nature, Vol. 470, Issue 7332, p. 73-77
Determination of intramolecular bond lengths in gas phase molecules from K shell shape resonances
journal, December 1984
- Sette, F.; Stöhr, J.; Hitchcock, A. P.
- The Journal of Chemical Physics, Vol. 81, Issue 11
Die Kristallstruktur von Imidazol, C 3 N 2 H 4 , bei Zimmertemperatur
journal, May 1969
- Will, Georg
- Zeitschrift für Kristallographie, Vol. 129, Issue 1-4
Prenucleation clusters and non-classical nucleation
journal, December 2011
- Gebauer, Denis; Cölfen, Helmut
- Nano Today, Vol. 6, Issue 6
Self-association of imidazole and its methyl derivatives in aqueous solution. A study by ultraviolet spectroscopy
journal, August 1997
- Peral, F.; Gallego, E.
- Journal of Molecular Structure, Vol. 415, Issue 1-2
X-ray Absorption Spectroscopy Study of the Hydrogen Bond Network in the Bulk Water of Aqueous Solutions
journal, July 2005
- Näslund, Lars-Åke; Edwards, David C.; Wernet, Philippe
- The Journal of Physical Chemistry A, Vol. 109, Issue 27
Identification of Protonation State by XPS, Solid-State NMR, and DFT: Characterization of the Nature of a New Theophylline Complex by Experimental and Computational Methods
journal, November 2010
- Stevens, Joanna S.; Byard, Stephen J.; Muryn, Christopher A.
- The Journal of Physical Chemistry B, Vol. 114, Issue 44
Water ordering around methane during hydrate formation
journal, October 2000
- Koh, Carolyn A.; Wisbey, Robert P.; Wu, Xiaoping
- The Journal of Chemical Physics, Vol. 113, Issue 15
The Electronic Structure and Adsorption Geometry of l -Histidine on Cu(110)
journal, October 2008
- Feyer, Vitaliy; Plekan, Oksana; Skála, Tomáš
- The Journal of Physical Chemistry B, Vol. 112, Issue 43
A new imidazolylquinoline for organic thin film transistor
journal, February 2005
- Chen, Tsun-Ren; Yeh, Anchi; Chen, Jhy-Der
- Tetrahedron Letters, Vol. 46, Issue 9
Proton Transfer, Hydrogen Bonding, and Disorder: Nitrogen Near-Edge X-ray Absorption Fine Structure and X-ray Photoelectron Spectroscopy of Bipyridine–Acid Salts and Co-crystals
journal, March 2015
- Stevens, Joanna S.; Newton, Lauren K.; Jaye, Cherno
- Crystal Growth & Design, Vol. 15, Issue 4
Site-specific electronic structure of imidazole and imidazolium in aqueous solutions
journal, January 2018
- Meyer, F.; Blum, M.; Benkert, A.
- Physical Chemistry Chemical Physics, Vol. 20, Issue 12
Mode Recognition in UV Resonance Raman Spectra of Imidazole: Histidine Monitoring in Proteins
journal, July 2012
- Balakrishnan, Gurusamy; Jarzecki, Andrzej A.; Wu, Qiang
- The Journal of Physical Chemistry B, Vol. 116, Issue 31
Investigation of volatile liquid surfaces by synchrotron x-ray spectroscopy of liquid microjets
journal, March 2004
- Wilson, Kevin R.; Rude, Bruce S.; Smith, Jared
- Review of Scientific Instruments, Vol. 75, Issue 3
The nucleation of inosine: the impact of solution chemistry on the appearance of polymorphic and hydrated crystal forms
journal, January 2007
- Chiarella, Renato A.; Gillon, Amy L.; Burton, Rebecca C.
- Faraday Discussions, Vol. 136
Solution crystallisation via a submerged liquid–liquid phase boundary: oiling out
journal, February 2003
- Bonnett, P. E.; Carpenter, K. J.; Dawson, S.
- Chemical Communications, Issue 6
Photoemission from Liquid Aqueous Solutions
journal, April 2006
- Winter, Bernd; Faubel, Manfred
- Chemical Reviews, Vol. 106, Issue 4
Solvent structure and perturbations in solutions of chemical and biological importance
journal, January 1994
- Finney, J. L.; Soper, A. K.
- Chemical Society Reviews, Vol. 23, Issue 1
A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
journal, April 2010
- Grimme, Stefan; Antony, Jens; Ehrlich, Stephan
- The Journal of Chemical Physics, Vol. 132, Issue 15
Uncovering Molecular Processes in Crystal Nucleation and Growth by Using Molecular Simulation
journal, January 2011
- Anwar, Jamshed; Zahn, Dirk
- Angewandte Chemie International Edition, Vol. 50, Issue 9
Crystal nucleation in the presence of a metastable critical point
journal, July 1998
- Talanquer, V.; Oxtoby, David W.
- The Journal of Chemical Physics, Vol. 109, Issue 1
Quantitative analysis of complex amino acids and RGD peptides by X-ray photoelectron spectroscopy (XPS): Quantitative XPS analysis of amino acids and RGD peptides
journal, April 2013
- Stevens, Joanna S.; de Luca, Alba C.; Pelendritis, Michalis
- Surface and Interface Analysis, Vol. 45, Issue 8
A molecular beam study of the evaporation of water from a liquid jet
journal, June 1988
- Faubel, M.; Schlemmer, S.; Toennies, J. P.
- Zeitschrift f�r Physik D Atoms, Molecules and Clusters, Vol. 10, Issue 2-3
X-ray excited optical luminescence (XEOL) detection of x-ray absorption fine structure (XAFS)
journal, October 1998
- Soderholm, L.; Liu, G. K.; Antonio, Mark R.
- The Journal of Chemical Physics, Vol. 109, Issue 16
Enhancement of Protein Crystal Nucleation by Critical Density Fluctuations
journal, September 1997
- Wolde, Pieter Rein ten; Frenkel, Daan
- Science, Vol. 277, Issue 5334, p. 1975-1978
X-ray Spectroscopy of Liquid Water Microjets
journal, May 2001
- Wilson, Kevin R.; Rude, Bruce S.; Catalano, Tony
- The Journal of Physical Chemistry B, Vol. 105, Issue 17
The crystal structure of imidazole at –150°C
journal, November 1966
- Martinez-Carrera, S.
- Acta Crystallographica, Vol. 20, Issue 6
A 1H NMR study of crystal nucleation in solution
journal, January 2004
- Spitaleri, Andrea; Hunter, Christopher A.; McCabe, James F.
- CrystEngComm, Vol. 6, Issue 80
Universal Signature of Hydrogen Bonding in the Oxygen K -Edge Spectrum of Alcohols
journal, October 2010
- Pylkkänen, T.; Lehtola, J.; Hakala, M.
- The Journal of Physical Chemistry B, Vol. 114, Issue 41
Isotope effects in liquid water probed by x-ray Raman spectroscopy
journal, July 2007
- Bergmann, U.; Nordlund, D.; Wernet, Ph.
- Physical Review B, Vol. 76, Issue 2
Minimally augmented Karlsruhe basis sets
journal, December 2010
- Zheng, Jingjing; Xu, Xuefei; Truhlar, Donald G.
- Theoretical Chemistry Accounts, Vol. 128, Issue 3
Ionization of Imidazole in the Gas Phase, Microhydrated Environments, and in Aqueous Solution
journal, April 2008
- Jagoda-Cwiklik, Barbara; Slavíček, Petr; Cwiklik, Lukasz
- The Journal of Physical Chemistry A, Vol. 112, Issue 16
Using a novel plug flow reactor for the in situ, simultaneous, monitoring of SAXS and WAXD during crystallisation from solution
journal, January 2003
- Alison, Harvey G.; Davey, Roger J.; Garside, John
- Physical Chemistry Chemical Physics, Vol. 5, Issue 22
The crystal structure of imidazole by neutron diffraction at 20°C and –150°C
journal, August 1977
- Craven, B. M.; McMullan, R. K.; Bell, J. D.
- Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry, Vol. 33, Issue 8
Experimental studies of the core excitation of imidazole, 4,5-dicyanoimidazole, and s-triazine
journal, July 1993
- Apen, Elizabeth; Hitchcock, Adam P.; Gland, John L.
- The Journal of Physical Chemistry, Vol. 97, Issue 26
Chemical Speciation and Bond Lengths of Organic Solutes by Core-Level Spectroscopy: pH and Solvent Influence on p -Aminobenzoic Acid
journal, March 2015
- Stevens, Joanna S.; Gainar, Adrian; Suljoti, Edlira
- Chemistry - A European Journal, Vol. 21, Issue 19
Quantum Calculation of Molecular Energies and Energy Gradients in Solution by a Conductor Solvent Model
journal, March 1998
- Barone, Vincenzo; Cossi, Maurizio
- The Journal of Physical Chemistry A, Vol. 102, Issue 11
Nucleation of First-Order Phase Transitions
journal, February 1998
- Oxtoby, David W.
- Accounts of Chemical Research, Vol. 31, Issue 2
Adsorption of Histidine and Histidine-Containing Peptides on Au(111)
journal, June 2010
- Feyer, Vitaliy; Plekan, Oksana; Tsud, Nataliya
- Langmuir, Vol. 26, Issue 11
Aqueous Imidazole Solutions: A Structural Perspective from Simulations with High-Rank Electrostatic Multipole Moments
journal, October 2011
- Liem, Steven Y.; Shaik, Majeed S.; Popelier, Paul L. A.
- The Journal of Physical Chemistry B, Vol. 115, Issue 39
Prediction of molecular properties and molecular spectroscopy with density functional theory: From fundamental theory to exchange-coupling
journal, March 2009
- Neese, Frank
- Coordination Chemistry Reviews, Vol. 253, Issue 5-6
Nucleation of Organic Crystals-A Molecular Perspective
journal, January 2013
- Davey, Roger J.; Schroeder, Sven L. M.; ter Horst, Joop H.
- Angewandte Chemie International Edition, Vol. 52, Issue 8
Bonding of Histidine to Cerium Oxide
journal, July 2013
- Tsud, Nataliya; Acres, Robert G.; Iakhnenko, Marianna
- The Journal of Physical Chemistry B, Vol. 117, Issue 31
Influence of TMAO and urea on the structure of water studied by inelastic X-ray scattering
journal, January 2016
- Sahle, Christoph J.; Schroer, Martin A.; Juurinen, Iina
- Physical Chemistry Chemical Physics, Vol. 18, Issue 24
Efficient, approximate and parallel Hartree–Fock and hybrid DFT calculations. A ‘chain-of-spheres’ algorithm for the Hartree–Fock exchange
journal, February 2009
- Neese, Frank; Wennmohs, Frank; Hansen, Andreas
- Chemical Physics, Vol. 356, Issue 1-3
Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields
journal, November 1994
- Stephens, P. J.; Devlin, F. J.; Chabalowski, C. F.
- The Journal of Physical Chemistry, Vol. 98, Issue 45, p. 11623-11627
Concerning the Relationship between Structural and Growth Synthons in Crystal Nucleation: Solution and Crystal Chemistry of Carboxylic Acids As Revealed through IR Spectroscopy
journal, August 2006
- Davey, R. J.; Dent, G.; Mughal, R. K.
- Crystal Growth & Design, Vol. 6, Issue 8
X-ray Absorption Spectroscopy Measurements of Liquid Water
journal, July 2005
- Näslund, L. -Å.; Lüning, J.; Ufuktepe, Y.
- The Journal of Physical Chemistry B, Vol. 109, Issue 28
X-ray Raman spectroscopy at the oxygen K edge of water and ice: Implications on local structure models
journal, September 2002
- Bergmann, U.; Wernet, Ph.; Glatzel, P.
- Physical Review B, Vol. 66, Issue 9
Multielement spectrometer for efficient measurement of the momentum transfer dependence of inelastic x-ray scattering
journal, June 2006
- Fister, T. T.; Seidler, G. T.; Wharton, L.
- Review of Scientific Instruments, Vol. 77, Issue 6
Simulation of liquid imidazole using a high-rank quantum topological electrostatic potential
journal, January 2010
- Shaik, Majeed S.; Liem, Steven Y.; Yuan, Yongna
- Physical Chemistry Chemical Physics, Vol. 12, Issue 45
Fityk : a general-purpose peak fitting program
journal, September 2010
- Wojdyr, Marcin
- Journal of Applied Crystallography, Vol. 43, Issue 5
A miniature closed-circle flow cell for high photon flux X-ray scattering experiments
journal, September 2015
- Sahle, Ch. J.; Henriquet, C.; Schroer, M. A.
- Journal of Synchrotron Radiation, Vol. 22, Issue 6
Saturation Behavior in X-ray Raman Scattering Spectra of Aqueous LiCl
journal, December 2013
- Juurinen, Iina; Pylkkänen, Tuomas; Ruotsalainen, Kari O.
- The Journal of Physical Chemistry B, Vol. 117, Issue 51