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Title: Nanometrology of Biomass for Bioenergy: The Role of Atomic Force Microscopy and Spectroscopy in Plant Cell Characterization

Journal Article · · Frontiers in Energy Research
 [1];  [2];  [3];  [4];  [5]
  1. Aix-Marseille Univ., Marseille (France). Interdisciplinary Nanoscience Center of Marseille (CINaM)
  2. Aix-Marseille Univ., Marseille (France). Inst. Fresnel
  3. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Quantum Information Science. Computational Sciences and Engineering Division
  4. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). BioEnergy Science Center (BESC). Biosciences Division
  5. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Quantum Information Science. Computational Sciences and Engineering Division. BioEnergy Science Center (BESC). Biosciences Division; Univ. of Tennessee, Knoxville, TN (United States). Dept. of Chemical and Biomolecular Engineering. Dept. of Physics

Ethanol production using extracted cellulose from plant cell walls (PCW) is a very promising approach to biofuel production. However, efficient throughput has been hindered by the phenomenon of recalcitrance, leading to high costs for the lignocellulosic conversion. To overcome recalcitrance, it is necessary to understand the chemical and structural properties of the plant biological materials, which have evolved to generate the strong and cohesive features observed in plants. Therefore, tools and methods that allow the investigation of how the different molecular components of PCW are organized and distributed and how this impacts the mechanical properties of the plants are needed but challenging due to the molecular and morphological complexity of PCW. Atomic force microscopy (AFM), capitalizing on the interfacial nanomechanical forces, encompasses a suite of measurement modalities for nondestructive material characterization. Here, we present a review focused on the utilization of AFM for imaging and determination of physical properties of plant-based specimens. The presented review encompasses the AFM derived techniques for topography imaging (AM-AFM), mechanical properties (QFM), and surface/subsurface (MSAFM, HPFM) chemical composition imaging. In particular, the motivation and utility of force microscopy of plant cell walls from the early fundamental investigations to achieve a better understanding of the cell wall architecture, to the recent studies for the sake of advancing the biofuel research are discussed. An example of delignification protocol is described and the changes in morphology, chemical composition and mechanical properties and their correlation at the nanometer scale along the process are illustrated.

Research Organization:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23)
Grant/Contract Number:
AC05-00OR22725
OSTI ID:
1474678
Journal Information:
Frontiers in Energy Research, Journal Name: Frontiers in Energy Research Vol. 6; ISSN 2296-598X
Publisher:
Frontiers Research FoundationCopyright Statement
Country of Publication:
United States
Language:
English

References (82)

Biodegradation of lignin by fungi, bacteria and laccases journal November 2016
Atomic Force Microscopy Stiffness Tomography on Living Arabidopsis thaliana Cells Reveals the Mechanical Properties of Surface and Deep Cell-Wall Layers during Growth journal August 2012
Micromechanical understanding of the cell-wall structure journal September 2004
Nature’s hierarchical materials journal November 2007
New Insight into Cellulose Structure by Atomic Force Microscopy Shows the Iα Crystal Phase at Near-Atomic Resolution journal August 2000
Field and pulping performances of transgenic trees with altered lignification journal June 2002
Mechanical properties of pyrolysed wood: a nanoindentation study journal April 2006
Nanometrology of delignified Populus using mode synthesizing atomic force microscopy journal October 2011
Plant micro- and nanomechanics: experimental techniques for plant cell-wall analysis journal September 2013
Measuring the elastic properties of biological samples with the AFM journal January 1997
Physico-Chemical Evolution in Lignocellulosic Feedstocks During Hydrothermal Pretreatment and Delignification journal June 2015
Mapping out the structural changes of natural and pretreated plant cell wall surfaces by atomic force microscopy single molecular recognition imaging journal January 2013
Understanding the structural and chemical changes of plant biomass following steam explosion pretreatment journal February 2017
Determination of the Elastic Properties of Tomato Fruit Cells with an Atomic Force Microscope journal September 2013
Poplar as a feedstock for biofuels: A review of compositional characteristics journal March 2010
Enzymatic Delignification of Biomass for Enhanced Fermentable Sugars Production journal January 2015
Advances in understanding the surface chemistry of lignocellulosic biomass via time-of-flight secondary ion mass spectrometry journal December 2016
Atomic Force Microscopy of Plant Cell Walls book December 2010
Longitudinal hardness and Young's modulus of spruce tracheid secondary walls using nanoindentation technique journal April 1997
Mechanical properties of spruce wood cell walls by nanoindentation journal December 2004
Nanoindentation of wood cell walls: effects of sample preparation and indentation protocol journal August 2013
Effect of contact deformations on the adhesion of particles journal November 1975
Fractured polymer/silica fiber surface studied by tapping mode atomic force microscopy journal June 1993
Assessment of size reduction as a preliminary step in the production of ethanol from lignocellulosic wastes journal January 1989
New Insight into Cellulose Structure by Atomic Force Microscopy Shows the Iα Crystal Phase at Near-Atomic Resolution journal August 2000
Measuring the viscoelastic properties of human platelets with the atomic force microscope journal January 1996
Visualization of plant cell walls by atomic force microscopy journal March 1996
Dynamic atomic force microscopy methods journal September 2002
Cell-wall hardness and Young's modulus of melamine-modified spruce wood by nano-indentation journal August 2002
Biodegradation of lignin by fungi, bacteria and laccases journal November 2016
Combined acid/alkaline-peroxide pretreatment of olive tree biomass for bioethanol production journal September 2017
Atomic Force Microscopy Stiffness Tomography on Living Arabidopsis thaliana Cells Reveals the Mechanical Properties of Surface and Deep Cell-Wall Layers during Growth journal August 2012
The significance of the elastic modulus of wood cell walls obtained from nanoindentation measurements journal November 2004
Micromechanical understanding of the cell-wall structure journal September 2004
The use of atomic force microscopy as a tool to study the effect of a xylanase from Humicola grisea var. thermoidea in kraft pulp bleaching journal March 2007
Effect of different organosolv treatments on the structure and properties of olive tree pruning lignin journal May 2014
Glyphosate-induced stiffening of HaCaT keratinocytes, a Peak Force Tapping study on living cells journal April 2012
Nature’s hierarchical materials journal November 2007
A review on delignification of lignocellulosic biomass for enhancement of ethanol production potential journal April 2014
Application of pretreatment, fermentation and molecular techniques for enhancing bioethanol production from grass biomass – A review journal October 2017
Force measurements with the atomic force microscope: Technique, interpretation and applications journal October 2005
Nanoscale Swelling Heterogeneities in Type I Collagen Fibrils journal May 2015
Atomic force microscopy and transmission electron microscopy of cellulose from Micrasterias denticulata; evidence for a chiral helical microfibril twist journal January 1997
How biotech can transform biofuels journal February 2008
Field and pulping performances of transgenic trees with altered lignification journal June 2002
Fast nanomechanical spectroscopy of soft matter journal January 2014
Nanoscale compositional mapping with gentle forces journal June 2007
Imaging nanoparticles in cells by nanomechanical holography journal June 2008
New modes for subsurface atomic force microscopy through nanomechanical coupling journal December 2009
Opto-nanomechanical spectroscopic material characterization journal August 2015
Nanoscale movements of cellulose microfibrils in primary cell walls journal April 2017
Plasticity, elasticity, and adhesion energy of plant cell walls: nanometrology of lignin loss using atomic force microscopy journal March 2017
Variation of Nanostructures, Molecular Interactions, and Anisotropic Elastic Moduli of Lignocellulosic Cell Walls with Moisture journal May 2017
Nickel oxide nanoparticles film produced by dead biomass of filamentous fungus journal September 2014
Effect of hydrothermal pretreatment on the structural changes of alkaline ethanol lignin from wheat straw journal December 2016
Manufacture and application of lignin-based carbon fibers (LCFs) and lignin-based carbon nanofibers (LCNFs) journal January 2017
Measurements of single molecular affinity interactions between carbohydrate-binding modules and crystalline cellulose fibrils journal January 2013
Atomic force microscope–force mapping and profiling on a sub 100‐Å scale journal May 1987
Single-step direct measurement of amyloid fibrils stiffness by peak force quantitative nanomechanical atomic force microscopy journal May 2011
Mechanical properties of pyrolysed wood: a nanoindentation study journal April 2006
Nanometrology of delignified Populus using mode synthesizing atomic force microscopy journal October 2011
Plant micro- and nanomechanics: experimental techniques for plant cell-wall analysis journal September 2013
Mapping nano-scale mechanical heterogeneity of primary plant cell walls journal March 2016
The hierarchical structure and mechanics of plant materials journal June 2012
Surface Energy and the Contact of Elastic Solids
  • Johnson, K. L.; Kendall, K.; Roberts, A. D.
  • Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 324, Issue 1558 https://doi.org/10.1098/rspa.1971.0141
journal September 1971
Mechanical properties of epidermal cells of whole living roots of Arabidopsis thaliana : An atomic force microscopy study journal February 2012
Atomic Force Microscope journal March 1986
Branched Pectic Galactan in Phloem-Sieve-Element Cell Walls: Implications for Cell Mechanics journal November 2017
Measuring the elastic properties of biological samples with the AFM journal January 1997
Comparing Mechanical Properties of Secondary Wall and Cell Corner Middle Lamella in Spruce Wood journal January 1997
Physico-Chemical Evolution in Lignocellulosic Feedstocks During Hydrothermal Pretreatment and Delignification journal June 2015
A zoom into the nanoscale texture of secondary cell walls journal January 2014
Mapping out the structural changes of natural and pretreated plant cell wall surfaces by atomic force microscopy single molecular recognition imaging journal January 2013
Understanding the structural and chemical changes of plant biomass following steam explosion pretreatment journal February 2017
A comparison of various lignin-extraction methods to enhance the accessibility and ease of enzymatic hydrolysis of the cellulosic component of steam-pretreated poplar journal June 2017
Adhesive penetration of wood cell walls investigated by scanning thermal microscopy (SThM) journal January 2008
On the generality of the relationship among contact stiffness, contact area, and elastic modulus during indentation journal March 1992
Imaging and Measurement of Nanomechanical Properties within Primary Xylem Cell Walls of Broadleaves journal January 2014
Efficient Eucalypt Cell Wall Deconstruction and Conversion for Sustainable Lignocellulosic Biofuels journal November 2015
Comparison of Different Biomass Pretreatment Techniques and Their Impact on Chemistry and Structure journal February 2015
Determination of the Elastic Properties of Tomato Fruit Cells with an Atomic Force Microscope journal September 2013
AFM-based Mapping of the Elastic Properties of Cell Walls: at Tissue, Cellular, and Subcellular Resolutions journal January 2014

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