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Title: Identifying Stable Fragments of Arabidopsis thaliana Cellulose Synthase Subunit 3 by Yeast Display

Abstract

Determining structures of large, complex proteins remains challenging, especially for transmembrane proteins, as the protein size increases. Additionally, Arabidopsis thaliana cellulose synthesis complex is a large, multimeric complex located in the plant cell membrane that synthesizes cellulose microfibrils in the plant cell wall. Despite the biological and economic importance of cellulose and therefore cellulose synthesis, many aspects of the cellulase synthase complex (CSC) structure and function are still unknown. Here, yeast surface display (YSD) is used to determine the full-length expression of A. thaliana cellulose synthase 3 (AtCesA3) fragments. The level of stably-folded AtCesA3 fragments displayed on the yeast surface are determined using flow cytometric analysis of differential surface expression of epitopes flanking the AtCesA3 fragment. This technique provides a fast and simple method for examining folding and expression of protein domains and fragments of complex proteins.

Authors:
 [1];  [1];  [1];  [1];  [2]; ORCiD logo [1]
  1. Univ. of Tennessee, Knoxville, TN (United States)
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Center for Structural Molecular Biology (CSMB)
Publication Date:
Research Org.:
Energy Frontier Research Centers (EFRC) (United States). Center for Lignocellulose Structure and Formation (CLSF); Pennsylvania State Univ., University Park, PA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1767458
Alternate Identifier(s):
OSTI ID: 1473738
Grant/Contract Number:  
SC0001090; AC05-00OR22725; AC05‐00OR22725
Resource Type:
Accepted Manuscript
Journal Name:
Biotechnology Journal
Additional Journal Information:
Journal Volume: 14; Journal Issue: 4; Journal ID: ISSN 1860-6768
Publisher:
Wiley
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; biofuels (including algae and biomass); bio-inspired; membrane; carbon sequestration; materials and chemistry by design; synthesis (self-assembly); cellulose synthase; domain identification; library of random protein fragments; protein stability; yeast surface display

Citation Formats

Raeeszadeh‐Sarmazdeh, Maryam, Patel, Nikhil, Cruise, Sarah, Owen, Leila, O'Neill, Hugh, and Boder, Eric T. Identifying Stable Fragments of Arabidopsis thaliana Cellulose Synthase Subunit 3 by Yeast Display. United States: N. p., 2018. Web. doi:10.1002/biot.201800353.
Raeeszadeh‐Sarmazdeh, Maryam, Patel, Nikhil, Cruise, Sarah, Owen, Leila, O'Neill, Hugh, & Boder, Eric T. Identifying Stable Fragments of Arabidopsis thaliana Cellulose Synthase Subunit 3 by Yeast Display. United States. https://doi.org/10.1002/biot.201800353
Raeeszadeh‐Sarmazdeh, Maryam, Patel, Nikhil, Cruise, Sarah, Owen, Leila, O'Neill, Hugh, and Boder, Eric T. Sat . "Identifying Stable Fragments of Arabidopsis thaliana Cellulose Synthase Subunit 3 by Yeast Display". United States. https://doi.org/10.1002/biot.201800353. https://www.osti.gov/servlets/purl/1767458.
@article{osti_1767458,
title = {Identifying Stable Fragments of Arabidopsis thaliana Cellulose Synthase Subunit 3 by Yeast Display},
author = {Raeeszadeh‐Sarmazdeh, Maryam and Patel, Nikhil and Cruise, Sarah and Owen, Leila and O'Neill, Hugh and Boder, Eric T.},
abstractNote = {Determining structures of large, complex proteins remains challenging, especially for transmembrane proteins, as the protein size increases. Additionally, Arabidopsis thaliana cellulose synthesis complex is a large, multimeric complex located in the plant cell membrane that synthesizes cellulose microfibrils in the plant cell wall. Despite the biological and economic importance of cellulose and therefore cellulose synthesis, many aspects of the cellulase synthase complex (CSC) structure and function are still unknown. Here, yeast surface display (YSD) is used to determine the full-length expression of A. thaliana cellulose synthase 3 (AtCesA3) fragments. The level of stably-folded AtCesA3 fragments displayed on the yeast surface are determined using flow cytometric analysis of differential surface expression of epitopes flanking the AtCesA3 fragment. This technique provides a fast and simple method for examining folding and expression of protein domains and fragments of complex proteins.},
doi = {10.1002/biot.201800353},
journal = {Biotechnology Journal},
number = 4,
volume = 14,
place = {United States},
year = {Sat Sep 01 00:00:00 EDT 2018},
month = {Sat Sep 01 00:00:00 EDT 2018}
}

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Works referenced in this record:

Limitations of yeast surface display in engineering proteins of high thermostability
journal, March 2006

  • Park, Sheldon; Xu, Yao; Stowell, Xiaoran Fu
  • Protein Engineering, Design and Selection, Vol. 19, Issue 5, p. 211-217
  • DOI: 10.1093/protein/gzl003

Direct Molecular Evolution of Detergent-Stable G Protein-Coupled Receptors Using Polymer Encapsulated Cells
journal, February 2013


Higher plant cellulose synthases
journal, January 2000


Engineering antibodies by yeast display
journal, October 2012

  • Boder, Eric T.; Raeeszadeh-Sarmazdeh, Maryam; Price, J. Vincent
  • Archives of Biochemistry and Biophysics, Vol. 526, Issue 2
  • DOI: 10.1016/j.abb.2012.03.009

Rolling Adhesion of αL I Domain Mutants Decorrelated from Binding Affinity
journal, June 2006

  • Pepper, Lauren R.; Hammer, Daniel A.; Boder, Eric T.
  • Journal of Molecular Biology, Vol. 360, Issue 1
  • DOI: 10.1016/j.jmb.2006.04.049

F ine‐tuning sortase‐mediated immobilization of protein layers on surfaces using sequential deprotection and coupling
journal, March 2017

  • Raeeszadeh‐Sarmazdeh, Maryam; Parthasarathy, Ranganath; Boder, Eric T.
  • Biotechnology Progress, Vol. 33, Issue 3
  • DOI: 10.1002/btpr.2449

Yeast surface display for screening combinatorial polypeptide libraries
journal, June 1997

  • Boder, Eric T.; Wittrup, K. Dane
  • Nature Biotechnology, Vol. 15, Issue 6
  • DOI: 10.1038/nbt0697-553

Directed Evolution of Protein Thermal Stability Using Yeast Surface Display
book, March 2017


The changing landscape of membrane protein structural biology through developments in electron microscopy
journal, February 2016


Isolating and engineering human antibodies using yeast surface display
journal, July 2006

  • Chao, Ginger; Lau, Wai L.; Hackel, Benjamin J.
  • Nature Protocols, Vol. 1, Issue 2
  • DOI: 10.1038/nprot.2006.94

Overcoming the challenges of membrane protein crystallography
journal, October 2008

  • Carpenter, Elisabeth P.; Beis, Konstantinos; Cameron, Alexander D.
  • Current Opinion in Structural Biology, Vol. 18, Issue 5
  • DOI: 10.1016/j.sbi.2008.07.001

A simplified procedure for antibody engineering by yeast surface display: Coupling display levels and target binding by ribosomal skipping
journal, December 2016

  • Grzeschik, Julius; Hinz, Steffen C.; Könning, Doreen
  • Biotechnology Journal, Vol. 12, Issue 2
  • DOI: 10.1002/biot.201600454

Dual display of proteins on the yeast cell surface simplifies quantification of binding interactions and enzymatic bioconjugation reactions
journal, April 2017

  • Lim, Sungwon; Glasgow, Jeff E.; Filsinger Interrante, Maria
  • Biotechnology Journal, Vol. 12, Issue 5
  • DOI: 10.1002/biot.201600696

Directed Evolution of Brain-Derived Neurotrophic Factor for Improved Folding and Expression in Saccharomyces cerevisiae
journal, July 2014

  • Burns, Michael L.; Malott, Thomas M.; Metcalf, Kevin J.
  • Applied and Environmental Microbiology, Vol. 80, Issue 18
  • DOI: 10.1128/AEM.01466-14

Directed evolution of Her2/neu-binding IgG1-Fc for improved stability and resistance to aggregation by using yeast surface display
journal, December 2012

  • Traxlmayr, Michael W.; Lobner, Elisabeth; Antes, Bernhard
  • Protein Engineering, Design and Selection, Vol. 26, Issue 4
  • DOI: 10.1093/protein/gzs102

Comparative Structural and Computational Analysis Supports Eighteen Cellulose Synthases in the Plant Cellulose Synthesis Complex
journal, June 2016

  • Nixon, B. Tracy; Mansouri, Katayoun; Singh, Abhishek
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep28696

DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution.
journal, October 1994


Directed evolution of the epidermal growth factor receptor extracellular domain for expression in yeast
journal, December 2005

  • Kim, Yong-Sung; Bhandari, Rashna; Cochran, Jennifer R.
  • Proteins: Structure, Function, and Bioinformatics, Vol. 62, Issue 4
  • DOI: 10.1002/prot.20618

A Structural Study of CESA1 Catalytic Domain of Arabidopsis Cellulose Synthesis Complex: Evidence for CESA Trimers
journal, November 2015

  • Vandavasi, Venu Gopal; Putnam, Daniel K.; Zhang, Qiu
  • Plant Physiology, Vol. 170, Issue 1
  • DOI: 10.1104/pp.15.01356

Cellulose Synthase Complexes: Composition and Regulation
journal, January 2012


Directed evolution of proteins for increased stability and expression using yeast display
journal, October 2012

  • Traxlmayr, Michael W.; Obinger, Christian
  • Archives of Biochemistry and Biophysics, Vol. 526, Issue 2
  • DOI: 10.1016/j.abb.2012.04.022

Domain-level antibody epitope mapping through yeast surface display of epidermal growth factor receptor fragments
journal, April 2004

  • Cochran, Jennifer R.; Kim, Yong-Sung; Olsen, Mark J.
  • Journal of Immunological Methods, Vol. 287, Issue 1-2
  • DOI: 10.1016/j.jim.2004.01.024

Tertiary model of a plant cellulose synthase
journal, April 2013

  • Sethaphong, L.; Haigler, C. H.; Kubicki, J. D.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 18
  • DOI: 10.1073/pnas.1301027110

Engineering Antibodies for Cancer Therapy
journal, July 2011


Sortase A as a Novel Molecular “Stapler” for Sequence-Specific Protein Conjugation
journal, March 2007

  • Parthasarathy, Ranganath; Subramanian, Shyamsundar; Boder, Eric T.
  • Bioconjugate Chemistry, Vol. 18, Issue 2
  • DOI: 10.1021/bc060339w

Membrane protein structure determination — The next generation
journal, January 2014

  • Moraes, Isabel; Evans, Gwyndaf; Sanchez-Weatherby, Juan
  • Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1838, Issue 1
  • DOI: 10.1016/j.bbamem.2013.07.010

Yeast polypeptide fusion surface display levels predict thermal stability and soluble secretion efficiency
journal, October 1999

  • Shusta, Eric V.; Kieke, Michele C.; Parke, Evan
  • Journal of Molecular Biology, Vol. 292, Issue 5, p. 949-956
  • DOI: 10.1006/jmbi.1999.3130

Cracking the elusive alignment hypothesis: the microtubule–cellulose synthase nexus unraveled
journal, November 2012


Determining membrane protein structures: still a challenge!
journal, June 2007

  • Lacapère, Jean-Jacques; Pebay-Peyroula, Eva; Neumann, Jean-Michel
  • Trends in Biochemical Sciences, Vol. 32, Issue 6
  • DOI: 10.1016/j.tibs.2007.04.001

Cellulose squeezes through
journal, November 2010

  • Endler, Anne; Sánchez-Rodríguez, Clara; Persson, Staffan
  • Nature Chemical Biology, Vol. 6, Issue 12
  • DOI: 10.1038/nchembio.480

A Decade of Yeast Surface Display Technology: Where Are We Now?
journal, February 2008

  • Shusta, Eric; Pepper, Lauren; Cho, Yong
  • Combinatorial Chemistry & High Throughput Screening, Vol. 11, Issue 2
  • DOI: 10.2174/138620708783744516

Stability and Folding Behavior Analysis of Zinc-Finger Using Simple Models
journal, October 2010

  • Chang, Shan; Jiao, Xiong; Hu, Jian-Ping
  • International Journal of Molecular Sciences, Vol. 11, Issue 10
  • DOI: 10.3390/ijms11104014