Glycoside hydrolase gene transcription by Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and monosaccharides: a proposed xylan hydrolysis mechanism
Abstract
Metabolism of carbon bound in wheat arabinoxylan (WAX) polysaccharides by bacteria requires a number of glycoside hydrolases active toward different bonds between sugars and other molecules. Alicyclobacillus acidocaldarius is a Gram-positive thermoacidophilic bacterium capable of growth on a variety of mono-, di-, oligo-, and polysaccharides. Nineteen proposed glycoside hydrolases have been annotated in the A. acidocaldarius Type Strain ATCC27009/DSM 446 genome.
- Authors:
-
[1];
- Idaho National Lab. (INL), Idaho Falls, ID (United States); Idaho State Univ., Pocatello, ID (United States); Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
- Idaho National Lab. (INL), Idaho Falls, ID (United States)
- Idaho State Univ., Pocatello, ID (United States)
- New Mexico Institute of Mining and Technology, Socorro, NM (United States)
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Idaho National Laboratory (INL), Idaho Falls, ID (United States)
- Sponsoring Org.:
- USDOE Office of Nuclear Energy (NE)
- OSTI Identifier:
- 1437038
- Alternate Identifier(s):
- OSTI ID: 1473709
- Report Number(s):
- PNNL-SA-121820; INL/JOU-16-40289-Rev000
Journal ID: ISSN 1754-6834; PII: 1110
- Grant/Contract Number:
- AC05-76RL01830; AC07-05ID14517
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Biotechnology for Biofuels
- Additional Journal Information:
- Journal Volume: 11; Journal Issue: 1; Journal ID: ISSN 1754-6834
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Alicyclobacillus acidocaldarius; Wheat arabinoxylan; Glycoside hydrolase; Microarray; alicyclobacillus acidocaldarius; glycoside hydrolase gene transcription; xylan hydrolysis mechanism
Citation Formats
Lee, Brady D., Apel, William A., Sheridan, Peter P., and DeVeaux, Linda C. Glycoside hydrolase gene transcription by Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and monosaccharides: a proposed xylan hydrolysis mechanism. United States: N. p., 2018.
Web. doi:10.1186/s13068-018-1110-3.
Lee, Brady D., Apel, William A., Sheridan, Peter P., & DeVeaux, Linda C. Glycoside hydrolase gene transcription by Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and monosaccharides: a proposed xylan hydrolysis mechanism. United States. https://doi.org/10.1186/s13068-018-1110-3
Lee, Brady D., Apel, William A., Sheridan, Peter P., and DeVeaux, Linda C. Mon .
"Glycoside hydrolase gene transcription by Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and monosaccharides: a proposed xylan hydrolysis mechanism". United States. https://doi.org/10.1186/s13068-018-1110-3. https://www.osti.gov/servlets/purl/1437038.
@article{osti_1437038,
title = {Glycoside hydrolase gene transcription by Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and monosaccharides: a proposed xylan hydrolysis mechanism},
author = {Lee, Brady D. and Apel, William A. and Sheridan, Peter P. and DeVeaux, Linda C.},
abstractNote = {Metabolism of carbon bound in wheat arabinoxylan (WAX) polysaccharides by bacteria requires a number of glycoside hydrolases active toward different bonds between sugars and other molecules. Alicyclobacillus acidocaldarius is a Gram-positive thermoacidophilic bacterium capable of growth on a variety of mono-, di-, oligo-, and polysaccharides. Nineteen proposed glycoside hydrolases have been annotated in the A. acidocaldarius Type Strain ATCC27009/DSM 446 genome.},
doi = {10.1186/s13068-018-1110-3},
journal = {Biotechnology for Biofuels},
number = 1,
volume = 11,
place = {United States},
year = {Mon Apr 16 00:00:00 EDT 2018},
month = {Mon Apr 16 00:00:00 EDT 2018}
}
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Purification and characterization of highly thermostable α-amylase from thermophilic Alicyclobacillus acidocaldarius
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Microbial carbohydrate esterases deacetylating plant polysaccharides
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Identification of an acidic α-amylase from Alicyclobacillus sp. A4 and assessment of its application in the starch industry
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- Food Chemistry, Vol. 131, Issue 4
The mechanisms of carbon catabolite repression in bacteria
journal, April 2008
- Deutscher, Josef
- Current Opinion in Microbiology, Vol. 11, Issue 2, p. 87-93
Extremely Acidic β-1,4-Glucanase, CelA4, from Thermoacidophilic Alicyclobacillus sp. A4 with High Protease Resistance and Potential as a Pig Feed Additive
journal, February 2010
- Bai, Yingguo; Wang, Jianshe; Zhang, Zhifang
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Identification of protein coding regions by database similarity search
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- Gish, Warren; States, David J.
- Nature Genetics, Vol. 3, Issue 3
Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
journal, August 2008
- Görke, Boris; Stülke, Jörg
- Nature Reviews Microbiology, Vol. 6, Issue 8, p. 613-624
Depolymerization of lignocellulosic biomass to fuel precursors: maximizing carbon efficiency by combining hydrolysis with pyrolysis
journal, January 2010
- Jae, Jungho; Tompsett, Geoffrey A.; Lin, Yu-Chuan
- Energy & Environmental Science, Vol. 3, Issue 3
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
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- Bolstad, B. M.; Irizarry, R. A.; Astrand, M.
- Bioinformatics, Vol. 19, Issue 2
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
journal, April 2003
- Irizarry, Rafael A.; Hobbs, Bridget; Collin, Francois
- Biostatistics, Vol. 4, Issue 2, p. 249-264
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
journal, October 2013
- Tamura, Koichiro; Stecher, Glen; Peterson, Daniel
- Molecular Biology and Evolution, Vol. 30, Issue 12
IMG/M: the integrated metagenome data management and comparative analysis system
journal, November 2011
- Markowitz, V. M.; Chen, I. -M. A.; Chu, K.
- Nucleic Acids Research, Vol. 40, Issue D1
Comparative Sequence Analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and Proposal for Creation of a New Genus, Alicyclobacillus gen. nov.
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Cloning and sequencing of a gene encoding acidophilic amylase from Bacillus acidocaldarius
journal, October 1993
- Koivula, y.; Hemila, H.; Pakkanen, R.
- Journal of General Microbiology, Vol. 139, Issue 10
Analysis of a Thermotoga maritima DNA fragment encoding two similar thermostable cellulases, CelA and CelB, and characterization of the recombinant enzymes
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- Liebl, W.; Ruile, P.; Bronnenmeier, K.
- Microbiology, Vol. 142, Issue 9
Bacillus acidocaldarius sp.nov., an Acidophilic Thermophilic Spore-forming Bacterium
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- Darland, G.; Brock, T. D.
- Journal of General Microbiology, Vol. 67, Issue 1
Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N , N ′-diacetylchitobiose deacetylase
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- Mine, Shouhei; Niiyama, Mayumi; Hashimoto, Wakana
- FEBS Journal, Vol. 281, Issue 11
Isolation and identification of Alicyclobacillus acidocaldarius by 16S rDNA from mango juice and concentrate
journal, August 2005
- Gouws, Pieter A.; Gie, Lindy; Pretorius, Ashley
- International Journal of Food Science & Technology, Vol. 40, Issue 7
Purification, Properties and Structural Aspects of a Thermoacidophilic alpha-Amylase from Alicyclobacillus Acidocaldarius Atcc 27009
journal, December 1994
- Schwermann, Birgit; Pfau, Karsten; Liliensiek, Birgit
- European Journal of Biochemistry, Vol. 226, Issue 3, p. 981-991
Gene cloning, nucleotide sequence and biochemical properties of a cytoplasmic cyclomaltodextrinase (neopullulanase) from Alicyclobacillus acidocaldarius , reclassification of a group of enzymes
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- Matzke, Jutta; Herrmann, Anja; Schneider, Erwin
- FEMS Microbiology Letters, Vol. 183, Issue 1
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Deconstruction of Lignocellulosic Biomass to Fuels and Chemicals
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- Chundawat, Shishir P. S.; Beckham, Gregg T.; Himmel, Michael E.
- Annual Review of Chemical and Biomolecular Engineering, Vol. 2, Issue 1, p. 121-145
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
journal, August 2004
- Edgar, Robert C.
- BMC Bioinformatics, Vol. 5, Issue 1, p. 113
A Novel Thermoacidophilic Cellulase from Alicyclobacillus acidocaldarius
journal, September 2008
- Morana, A.; Esposito, A.; Maurelli, L.
- Protein & Peptide Letters, Vol. 15, Issue 9
Application of the hypervariable region of the 16S rDNA sequence as an index for the rapid identification of species in the genus Alicyclobacillus.
journal, January 2002
- Goto, Keiichi; Mochida, Kaoru; Asahara, Mika
- The Journal of General and Applied Microbiology, Vol. 48, Issue 5
Structure and Function of the LmbE-like Superfamily
journal, May 2014
- Viars, Shane; Valentine, Jason; Hernick, Marcy
- Biomolecules, Vol. 4, Issue 2
Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IAT)
journal, January 2010
- Mavromatis, Konstantinos; Sikorski, Johannes; Lapidus, Alla
- Standards in Genomic Sciences, Vol. 2, Issue 1
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