Unlocking preservation bias in the amber insect fossil record through experimental decay
Abstract
Fossils entombed in amber are a unique resource for reconstructing forest ecosystems, and resolving relationships of modern taxa. Such fossils are famous for their perfect, life-like appearance. However, preservation quality is vast with many sites showing only cuticular preservation, or no fossils. The taphonomic processes that control this range are largely unknown; as such, we know little about potential bias in this important record. Here we employ actualistic experiments, using, fruit flies and modern tree resin to determine whether resin type, gut microbiota, and dehydration prior to entombment affects decay. We used solid phase microextraction gas chromatography-mass spectrometry (SPME GC-MS) to confirm distinct tree resin chemistry; gut microbiota of flies was modified using antibiotics and categorized though sequencing. Decay was assessed using phase contrast synchrotron tomography. Resin type demonstrates a significant control on decay rate. The composition of the gut microbiota was also influential, with minor changes in composition affecting decay rate. Dehydration prior to entombment, contrary to expectations, enhanced decay. Our analyses show that there is potential significant bias in the amber fossil record, especially between sites with different resin types where ecological completeness and preservational fidelity are likely affected.
- Authors:
-
- Univ. of Leicester (United Kingdom); Univ. of Bonn (Germany)
- Argonne National Lab. (ANL), Argonne, IL (United States)
- Univ. of Leicester (United Kingdom); John Moores Univ., Liverpool (United Kingdom)
- Univ. of Michigan, Ann Arbor, MI (United States)
- Univ. of Leicester (United Kingdom)
- Publication Date:
- Research Org.:
- Argonne National Lab. (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1473585
- Grant/Contract Number:
- AC02-06CH11357
- Resource Type:
- Accepted Manuscript
- Journal Name:
- PLoS ONE
- Additional Journal Information:
- Journal Volume: 13; Journal Issue: 4; Journal ID: ISSN 1932-6203
- Publisher:
- Public Library of Science
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
McCoy, Victoria E., Soriano, Carmen, Pegoraro, Mirko, Luo, Ting, Boom, Arnoud, Foxman, Betsy, and Gabbott, Sarah E. Unlocking preservation bias in the amber insect fossil record through experimental decay. United States: N. p., 2018.
Web. doi:10.1371/journal.pone.0195482.
McCoy, Victoria E., Soriano, Carmen, Pegoraro, Mirko, Luo, Ting, Boom, Arnoud, Foxman, Betsy, & Gabbott, Sarah E. Unlocking preservation bias in the amber insect fossil record through experimental decay. United States. https://doi.org/10.1371/journal.pone.0195482
McCoy, Victoria E., Soriano, Carmen, Pegoraro, Mirko, Luo, Ting, Boom, Arnoud, Foxman, Betsy, and Gabbott, Sarah E. Thu .
"Unlocking preservation bias in the amber insect fossil record through experimental decay". United States. https://doi.org/10.1371/journal.pone.0195482. https://www.osti.gov/servlets/purl/1473585.
@article{osti_1473585,
title = {Unlocking preservation bias in the amber insect fossil record through experimental decay},
author = {McCoy, Victoria E. and Soriano, Carmen and Pegoraro, Mirko and Luo, Ting and Boom, Arnoud and Foxman, Betsy and Gabbott, Sarah E.},
abstractNote = {Fossils entombed in amber are a unique resource for reconstructing forest ecosystems, and resolving relationships of modern taxa. Such fossils are famous for their perfect, life-like appearance. However, preservation quality is vast with many sites showing only cuticular preservation, or no fossils. The taphonomic processes that control this range are largely unknown; as such, we know little about potential bias in this important record. Here we employ actualistic experiments, using, fruit flies and modern tree resin to determine whether resin type, gut microbiota, and dehydration prior to entombment affects decay. We used solid phase microextraction gas chromatography-mass spectrometry (SPME GC-MS) to confirm distinct tree resin chemistry; gut microbiota of flies was modified using antibiotics and categorized though sequencing. Decay was assessed using phase contrast synchrotron tomography. Resin type demonstrates a significant control on decay rate. The composition of the gut microbiota was also influential, with minor changes in composition affecting decay rate. Dehydration prior to entombment, contrary to expectations, enhanced decay. Our analyses show that there is potential significant bias in the amber fossil record, especially between sites with different resin types where ecological completeness and preservational fidelity are likely affected.},
doi = {10.1371/journal.pone.0195482},
journal = {PLoS ONE},
number = 4,
volume = 13,
place = {United States},
year = {2018},
month = {4}
}
Web of Science
Works referenced in this record:
T HE R OLE OF D ECAY AND M INERALIZATION IN THE P RESERVATION OF S OFT -B ODIED F OSSILS
journal, May 2003
- Briggs, Derek E. G.
- Annual Review of Earth and Planetary Sciences, Vol. 31, Issue 1
Taxonomic and Chemical Relationships Revealed by Nuclear Magnetic Resonance Spectra of Plant Exudates
journal, May 2005
- Lambert, Joseph B.; Wu, Yuyang; Santiago-Blay, Jorge A.
- Journal of Natural Products, Vol. 68, Issue 5
Fossil fish stomachs: A microenvironment for exceptional preservation
journal, January 1992
- Wilby, Philip R.; Martill, David M.
- Historical Biology, Vol. 6, Issue 1
Chemical Signatures of Fossilized Resins and Recent Plant Exudates
journal, December 2008
- Lambert, Joseph B.; Santiago-Blay, Jorge A.; Anderson, Ken B.
- Angewandte Chemie International Edition, Vol. 47, Issue 50
Preservative qualities of recent and fossil resins: Electron micrograph studies on tissue preserved in Baltic amber
journal, September 1985
- Poinar, George O.; Hess, Roberta
- Journal of Baltic Studies, Vol. 16, Issue 3
Amber: the Organic Gemstone
journal, August 2002
- Lambert, Joseph B.; Poinar, George O.
- Accounts of Chemical Research, Vol. 35, Issue 8
Wolbachia and Virus Protection in Insects
journal, October 2008
- Hedges, L. M.; Brownlie, J. C.; O'Neill, S. L.
- Science, Vol. 322, Issue 5902
Nuclear Magnetic Resonance Characterization of Cretaceous Amber
journal, August 1996
- Lambert, J. B.; Johnson, S. C.; Poinar, G. O.
- Archaeometry, Vol. 38, Issue 2
A chemical investigation by headspace SPME and GC–MS of volatile and semi-volatile terpenes in various olibanum samples
journal, June 2005
- Hamm, Sandrine; Bleton, Jean; Connan, Jacques
- Phytochemistry, Vol. 66, Issue 12
Comparing amber fossil assemblages across the Cenozoic
journal, December 2005
- Penney, David; Langan, A. Mark
- Biology Letters, Vol. 2, Issue 2
Taxonomic trends in the resolution of detail preserved in fossil phosphatized soft tissues
journal, January 1997
- Wilby, Philip R.; Briggs, Derek E. G.
- Geobios, Vol. 30
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
journal, April 2013
- McMurdie, Paul J.; Holmes, Susan
- PLoS ONE, Vol. 8, Issue 4
A mathematical theory of communication
journal, January 2001
- Shannon, C. E.
- ACM SIGMOBILE Mobile Computing and Communications Review, Vol. 5, Issue 1
Chemical Composition, Antimicrobial and Antioxidative Activity of Laurel, Sage, Rosemary, Oregano and Coriander Essential Oils
journal, November 1998
- Baratta, M. Tiziana; Dorman, H. J. Damien; Deans, Stanley G.
- Journal of Essential Oil Research, Vol. 10, Issue 6
Antimicrobial activity of essential oils from Tunisian aromatic plants
journal, January 2003
- Bouzouita, Nabiha; Kachouri, Faten; Hamdi, Moktar
- Flavour and Fragrance Journal, Vol. 18, Issue 5
DISTINGUISHING AMBER AND COPAL CLASSES BY PROTON MAGNETIC RESONANCE SPECTROSCOPY: Distinguishing amber and copal classes by magnetic resonance spectroscopy
journal, July 2011
- Lambert, J. B.; Tsai, C. Y. -H.; Shah, M. C.
- Archaeometry, Vol. 54, Issue 2
Transient adult microbiota, gut homeostasis and longevity: Novel insights from the Drosophila model
journal, June 2014
- Erkosar, Berra; Leulier, François
- FEBS Letters, Vol. 588, Issue 22
Entrapment Bias of Arthropods in Miocene Amber Revealed by Trapping Experiments in a Tropical Forest in Chiapas, Mexico
journal, March 2015
- Solórzano Kraemer, Mónica M.; Kraemer, Atahualpa S.; Stebner, Frauke
- PLOS ONE, Vol. 10, Issue 3
Exceptional Preservation of Dipteran Flight Muscle and the Taphonomy of Insects in Amber
journal, April 1992
- Henwood, Alison
- PALAIOS, Vol. 7, Issue 2
Headspace solid phase microextraction for screening for the presence of resins in Egyptian archaeological samples
journal, February 2004
- Hamm, Sandrine; Bleton, Jean; Tchapla, Alain
- Journal of Separation Science, Vol. 27, Issue 3
Taphonomy of insects in carbonates and amber
journal, January 2004
- Martı́nez-Delclòs, Xavier; Briggs, Derek E. G.; Peñalver, Enrique
- Palaeogeography, Palaeoclimatology, Palaeoecology, Vol. 203, Issue 1-2
Molecular composition and chemotaxonomic aspects of Eocene amber from the Ameki Formation, Nigeria
journal, October 2012
- Sonibare, Oluwadayo O.; Hoffmann, Thorsten; Foley, Stephen F.
- Organic Geochemistry, Vol. 51
Use of Ranks in One-Criterion Variance Analysis
journal, December 1952
- Kruskal, William H.; Wallis, W. Allen
- Journal of the American Statistical Association, Vol. 47, Issue 260
Antimicrobial agents from plants: antibacterial activity of plant volatile oils
journal, February 2000
- Dorman, H. J. D.; Deans, S. G.
- Journal of Applied Microbiology, Vol. 88, Issue 2
Fossiliferous amber deposits from the Cretaceous (Albian) of Spain
journal, January 2007
- Delclòs, Xavier; Arillo, Antonio; Peñalver, Enrique
- Comptes Rendus Palevol, Vol. 6, Issue 1-2
Synchrotron X-ray imaging of inclusions in amber
journal, September 2010
- Soriano, Carmen; Archer, Mike; Azar, Dany
- Comptes Rendus Palevol, Vol. 9, Issue 6-7
The First Ant-Termite Syninclusion in Amber with CT-Scan Analysis of Taphonomy
journal, August 2014
- Coty, David; Aria, Cédric; Garrouste, Romain
- PLoS ONE, Vol. 9, Issue 8
Examination of amber and related materials by NMR spectroscopy: NMR of amber
journal, August 2014
- Lambert, Joseph B.; Santiago-Blay, Jorge A.; Wu, Yuyang
- Magnetic Resonance in Chemistry, Vol. 53, Issue 1
Ultrastructure of 40-Million-Year-Old Insect Tissue
journal, March 1982
- Poinar, G. O.; Hess, R.
- Science, Vol. 215, Issue 4537
Importance of Dominican Republic amber for determining taxonomic bias of fossil resin preservation—A case study of spiders
journal, July 2005
- Penney, David
- Palaeogeography, Palaeoclimatology, Palaeoecology, Vol. 223, Issue 1-2
Contingent interactions among biofilm-forming bacteria determine preservation or decay in the first steps toward fossilization of marine embryos: Three-dimensional shape-preserving biofilms
journal, May 2013
- Raff, Elizabeth C.; Andrews, Mary E.; Turner, F. Rudolf
- Evolution & Development, Vol. 15, Issue 4
Paleoecology of Dominican amber preservation: spider (Araneae) inclusions demonstrate a bias for active, trunk-dwelling faunas
journal, September 2002
- Penney, David
- Paleobiology, Vol. 28, Issue 3
Chemical preservation of plants and insects in natural resins
journal, April 1998
- Stankiewicz, B. A.; Poinar, H. N.; Briggs, D. E. G.
- Proceedings of the Royal Society of London. Series B: Biological Sciences, Vol. 265, Issue 1397
The role of experiments in investigating the taphonomy of exceptional preservation
journal, November 2015
- Briggs, Derek E. G.; McMahon, Sean
- Palaeontology, Vol. 59, Issue 1
Nmr Analysis of Amber in the Zubair Formation, Khafji Oilfield (Saudi Arabia - Kuwait): coal as an oil Source Rock?
journal, April 2004
- Poinar, George; Lambert, Joseph B.; Wu, Yuyang
- Journal of Petroleum Geology, Vol. 27, Issue 2
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
journal, December 2005
- Lozupone, C.; Knight, R.
- Applied and Environmental Microbiology, Vol. 71, Issue 12
Optimization of headspace solid phase microextraction for gas chromatography/mass spectrometry analysis of widely different volatility and polarity terpenoids in olibanum
journal, November 2003
- Hamm, Sandrine; Lesellier, Eric; Bleton, Jean
- Journal of Chromatography A, Vol. 1018, Issue 1
A Mathematical Theory of Communication
journal, July 1948
- Shannon, C. E.
- Bell System Technical Journal, Vol. 27, Issue 3
Use of Ranks in One-Criterion Variance Analysis
journal, December 1952
- Kruskal, William H.; Wallis, W. Allen
- Journal of the American Statistical Association, Vol. 47, Issue 260
Long term crop rotation effect on subsequent soybean yield explained by soil and root-associated microbiomes and soil health indicators
journal, April 2021
- Neupane, Achal; Bulbul, Izzet; Wang, Ziyi
- Scientific Reports, Vol. 11, Issue 1
A Mathematical Theory of Communication
journal, October 1948
- Shannon, C. E.
- Bell System Technical Journal, Vol. 27, Issue 4
Works referencing / citing this record:
Ancient amino acids from fossil feathers in amber
journal, April 2019
- McCoy, Victoria E.; Gabbott, Sarah E.; Penkman, Kirsty
- Scientific Reports, Vol. 9, Issue 1