Integrated LAMP and immunoassay platform for diarrheal disease detection
Abstract
The challenges of diagnosing infectious disease, especially in the developing world, and the shortcomings of available instrumentation have exposed the need for portable, easy-to-use diagnostic tools capable of detecting the wide range of causative microbes while operating in low resource settings. Here, we present a centrifugal microfluidic platform that combines ultrasensitive immunoassay and isothermal amplification-based screening for the orthogonal detection of both protein and nucleic acid targets at the point-of-care. A disposable disc with automatic aliquoting inlets is paired with a non-contact heating system and precise rotary control system to yield an easy-to-use, field-deployable platform with versatile screening capabilities. The detection of three enterotoxins (cholera toxin, Staphylococcal enterotoxin B, and Shiga-like toxin 1) and three enteric bacteria (C. jejuni, E. coli, and S. typhimurium) were performed independently and shown to be highly sensitive (limit of detection = 1.35–5.50 ng/mL for immunoassays and 1–30 cells for isothermal amplification), highly exclusive in the presence of non-specific targets, and capable of handling a complex sample matrix like stool. The full panel of toxins and bacteria were reliably detected simultaneously on a single disc at clinically relevant sample concentrations in less than an hour. The ability of our technology to detect multiple analyte typesmore »
- Authors:
- Publication Date:
- Research Org.:
- Sandia National Lab. (SNL-CA), Livermore, CA (United States)
- Sponsoring Org.:
- USDOE National Nuclear Security Administration (NNSA); US Dept. of Homeland Security (DHS); National Institutes of Health (NIH)
- Contributing Org.:
- US Dept. of Agriculture (USDA) Agricultural Research Service (ARS)
- OSTI Identifier:
- 1617389
- Alternate Identifier(s):
- OSTI ID: 1472252
- Report Number(s):
- SAND2018-9227J
Journal ID: ISSN 0956-5663; S0956566318305943; PII: S0956566318305943
- Grant/Contract Number:
- R01AI098853; NA0003525; HSHQPM-13-X-00222; AC04-94AL85000
- Resource Type:
- Published Article
- Journal Name:
- Biosensors and Bioelectronics
- Additional Journal Information:
- Journal Name: Biosensors and Bioelectronics Journal Volume: 120 Journal Issue: C; Journal ID: ISSN 0956-5663
- Publisher:
- Elsevier
- Country of Publication:
- Netherlands
- Language:
- English
- Subject:
- 47 OTHER INSTRUMENTATION; 59 BASIC BIOLOGICAL SCIENCES; Microfluidics; Centrifugal; Point-of-care; Immunoassay; Isothermal amplification; LAMP; Enteric pathogens
Citation Formats
Phaneuf, Christopher R., Mangadu, Betty, Tran, Huu M., Light, Yooli K., Sinha, Anchal, Charbonier, Frank W., Eckles, Tyler P., Singh, Anup K., and Koh, Chung-Yan. Integrated LAMP and immunoassay platform for diarrheal disease detection. Netherlands: N. p., 2018.
Web. doi:10.1016/j.bios.2018.08.005.
Phaneuf, Christopher R., Mangadu, Betty, Tran, Huu M., Light, Yooli K., Sinha, Anchal, Charbonier, Frank W., Eckles, Tyler P., Singh, Anup K., & Koh, Chung-Yan. Integrated LAMP and immunoassay platform for diarrheal disease detection. Netherlands. https://doi.org/10.1016/j.bios.2018.08.005
Phaneuf, Christopher R., Mangadu, Betty, Tran, Huu M., Light, Yooli K., Sinha, Anchal, Charbonier, Frank W., Eckles, Tyler P., Singh, Anup K., and Koh, Chung-Yan. Thu .
"Integrated LAMP and immunoassay platform for diarrheal disease detection". Netherlands. https://doi.org/10.1016/j.bios.2018.08.005.
@article{osti_1617389,
title = {Integrated LAMP and immunoassay platform for diarrheal disease detection},
author = {Phaneuf, Christopher R. and Mangadu, Betty and Tran, Huu M. and Light, Yooli K. and Sinha, Anchal and Charbonier, Frank W. and Eckles, Tyler P. and Singh, Anup K. and Koh, Chung-Yan},
abstractNote = {The challenges of diagnosing infectious disease, especially in the developing world, and the shortcomings of available instrumentation have exposed the need for portable, easy-to-use diagnostic tools capable of detecting the wide range of causative microbes while operating in low resource settings. Here, we present a centrifugal microfluidic platform that combines ultrasensitive immunoassay and isothermal amplification-based screening for the orthogonal detection of both protein and nucleic acid targets at the point-of-care. A disposable disc with automatic aliquoting inlets is paired with a non-contact heating system and precise rotary control system to yield an easy-to-use, field-deployable platform with versatile screening capabilities. The detection of three enterotoxins (cholera toxin, Staphylococcal enterotoxin B, and Shiga-like toxin 1) and three enteric bacteria (C. jejuni, E. coli, and S. typhimurium) were performed independently and shown to be highly sensitive (limit of detection = 1.35–5.50 ng/mL for immunoassays and 1–30 cells for isothermal amplification), highly exclusive in the presence of non-specific targets, and capable of handling a complex sample matrix like stool. The full panel of toxins and bacteria were reliably detected simultaneously on a single disc at clinically relevant sample concentrations in less than an hour. The ability of our technology to detect multiple analyte types in parallel at the point-of-care can serve a variety of needs, from routine patient care to outbreak triage, in a variety of settings to reduce disease impact and expedite effective treatment.},
doi = {10.1016/j.bios.2018.08.005},
journal = {Biosensors and Bioelectronics},
number = C,
volume = 120,
place = {Netherlands},
year = {Thu Nov 01 00:00:00 EDT 2018},
month = {Thu Nov 01 00:00:00 EDT 2018}
}
https://doi.org/10.1016/j.bios.2018.08.005
Web of Science
Works referenced in this record:
Rapid, Portable, Multiplexed Detection of Bacterial Pathogens Directly from Clinical Sample Matrices
journal, September 2016
- Phaneuf, Christopher; Mangadu, Betty; Piccini, Matthew
- Biosensors, Vol. 6, Issue 4
Development of a Simple, Peripheral-Blood-Based Lateral-Flow Dipstick Assay for Accurate Detection of Patients with Enteric Fever
journal, May 2016
- Khan, Iqbal Hassan; Sayeed, M. Abu; Sultana, Nishat
- Clinical and Vaccine Immunology, Vol. 23, Issue 5
Centrifugal Microfluidic Platform for Ultrasensitive Detection of Botulinum Toxin
journal, December 2014
- Koh, Chung-Yan; Schaff, Ulrich Y.; Piccini, Matthew E.
- Analytical Chemistry, Vol. 87, Issue 2, p. 922-928
Better Tests, Better Care: Improved Diagnostics for Infectious Diseases
journal, November 2013
- Caliendo, A. M.; Gilbert, D. N.; Ginocchio, C. C.
- Clinical Infectious Diseases, Vol. 57, Issue suppl 3
Lessons from a large outbreak of Escherichia coli O157[ratio ]H7 infections: insights into the infectious dose and method of widespread contamination of hamburger patties
journal, April 1999
- Tuttle, J.; Gomez, T.; Doyle, M. P.
- Epidemiology and Infection, Vol. 122, Issue 2
The bio-barcode assay for the detection of protein and nucleic acid targets using DTT-induced ligand exchange
journal, June 2006
- Hill, Haley D.; Mirkin, Chad A.
- Nature Protocols, Vol. 1, Issue 1
Rapid tests for sexually transmitted infections (STIs): the way forward
journal, December 2006
- Peeling, R. W.; Holmes, K. K.; Mabey, D.
- Sexually Transmitted Infections, Vol. 82, Issue suppl_5
Whole Blood Immunoassay Based on Centrifugal Bead Sedimentation
journal, March 2011
- Schaff, U. Y.; Sommer, G. J.
- Clinical Chemistry, Vol. 57, Issue 5, p. 753-761
CD-Based Microfluidics for Primary Care in Extreme Point-of-Care Settings
journal, January 2016
- Smith, Suzanne; Mager, Dario; Perebikovsky, Alexandra
- Micromachines, Vol. 7, Issue 2
Bacteriophage-Based Enrichment Coupled to Immunochromatographic Strip–Based Detection for the Determination of Salmonella in Meat and Poultry
journal, October 2007
- Muldoon, Mark T.; Teaney, George; Li, Jingkun
- Journal of Food Protection, Vol. 70, Issue 10
Evaluation of a Rapid Test for the Diagnosis of Cholera in the Absence of a Gold Standard
journal, May 2012
- Page, Anne-Laure; Alberti, Kathryn P.; Mondonge, Vital
- PLoS ONE, Vol. 7, Issue 5
A Review of Biomedical Centrifugal Microfluidic Platforms
journal, February 2016
- Tang, Minghui; Wang, Guanghui; Kong, Siu-Kai
- Micromachines, Vol. 7, Issue 2
Comparison of the relative toxicities of Shiga-like toxins type I and type II for mice
journal, August 1993
- Tesh, V. L.; Burris, J. A.; Owens, J. W.
- Infection and Immunity, Vol. 61, Issue 8
Rapid multiplex detection of 10 foodborne pathogens with an up-converting phosphor technology-based 10-channel lateral flow assay
journal, February 2016
- Zhao, Yong; Wang, Haoran; Zhang, Pingping
- Scientific Reports, Vol. 6, Issue 1
Quenching of Unincorporated Amplification Signal Reporters in Reverse-Transcription Loop-Mediated Isothermal Amplification Enabling Bright, Single-Step, Closed-Tube, and Multiplexed Detection of RNA Viruses
journal, March 2016
- Ball, Cameron S.; Light, Yooli K.; Koh, Chung-Yan
- Analytical Chemistry, Vol. 88, Issue 7
Cholera Rapid Test with Enrichment Step Has Diagnostic Performance Equivalent to Culture
journal, December 2016
- Ontweka, Lameck N.; Deng, Lul O.; Rauzier, Jean
- PLOS ONE, Vol. 11, Issue 12
Global, regional, and national life expectancy, all-cause mortality, and cause-specific mortality for 249 causes of death, 1980–2015: a systematic analysis for the Global Burden of Disease Study 2015
journal, October 2016
- Wang, Haidong; Naghavi, Mohsen; Allen, Christine
- The Lancet, Vol. 388, Issue 10053
Comparison of Loop-Mediated Isothermal Amplification Assay and Conventional Culture Methods for Detection of Campylobacter jejuni and Campylobacter coli in Naturally Contaminated Chicken Meat Samples
journal, March 2009
- Yamazaki, Wataru; Taguchi, Masumi; Kawai, Takao
- Applied and Environmental Microbiology, Vol. 75, Issue 6
Outbreak of Salmonella typhimurium infection traced to contaminated chocolate and caused by a strain lacking the 60-megadalton virulence plasmid
journal, December 1990
- Kapperud, G.; Gustavsen, S.; Hellesnes, I.
- Journal of Clinical Microbiology, Vol. 28, Issue 12
Parallel Nanoliter Microfluidic Analysis System
journal, June 2007
- Andersson, Per; Jesson, Gerald; Kylberg, Gunnar
- Analytical Chemistry, Vol. 79, Issue 11, p. 4022-4030
Loop-Mediated Isothermal Amplification Assays for Detecting Shiga Toxin-Producing Escherichia coli in Ground Beef and Human Stools
journal, October 2011
- Wang, Fei; Jiang, Lin; Ge, Beilei
- Journal of Clinical Microbiology, Vol. 50, Issue 1
The present and future role of microfluidics in biomedical research
journal, March 2014
- Sackmann, Eric K.; Fulton, Anna L.; Beebe, David J.
- Nature, Vol. 507, Issue 7491
Long-term shedding and clonal turnover of enterohemorrhagic Escherichia coli O157 in diarrheal diseases
journal, June 1995
- Karch, H.; Rüssmann, H.; Schmidt, H.
- Journal of Clinical Microbiology, Vol. 33, Issue 6
Loop-mediated isothermal amplification for the rapid detection of Salmonella
journal, December 2005
- Hara-Kudo, Yukiko; Yoshino, Manabu; Kojima, Tadashi
- FEMS Microbiology Letters, Vol. 253, Issue 1
Loop-mediated isothermal amplification (LAMP): a rapid, accurate, and cost-effective diagnostic method for infectious diseases
journal, January 2009
- Mori, Yasuyoshi; Notomi, Tsugunori
- Journal of Infection and Chemotherapy, Vol. 15, Issue 2
Evaluation of a Rapid Lateral Flow Point-of-Care Test for Detection of Cryptosporidium
journal, October 2016
- Fleece, Molly E.; Heptinstall, Jack; Khan, Shaila S.
- The American Journal of Tropical Medicine and Hygiene, Vol. 95, Issue 4
Sensitive and rapid detection of Shigella and enteroinvasive Escherichia coli by a loop-mediated isothermal amplification method
journal, February 2005
- Song, Tianyan; Toma, Claudia; Nakasone, Noboru
- FEMS Microbiology Letters, Vol. 243, Issue 1
Bacterial toxins: a table of lethal amounts
journal, March 1982
- Gill, D. M.
- Microbiological Reviews, Vol. 46, Issue 1
Microfluidic diagnostic technologies for global public health
journal, July 2006
- Yager, Paul; Edwards, Thayne; Fu, Elain
- Nature, Vol. 442, Issue 7101, p. 412-418
Acute Diarrhea in Adults and Children: A Global Perspective
journal, January 2013
- Farthing, Michael; Salam, Mohammed A.; Lindberg, Greger
- Journal of Clinical Gastroenterology, Vol. 47, Issue 1
Advances in Rapid Detection Methods for Foodborne Pathogens
journal, March 2014
- Zhao, Xihong; Lin, Chii-Wann; Wang, Jun
- Journal of Microbiology and Biotechnology, Vol. 24, Issue 3
Centrifugal loop-mediated isothermal amplification microdevice for rapid, multiplex and colorimetric foodborne pathogen detection
journal, January 2016
- Oh, Seung Jun; Park, Byung Hyun; Jung, Jae Hwan
- Biosensors and Bioelectronics, Vol. 75