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Title: SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae

Authors:
 [1];  [2];  [3];  [4];  [5];  [1];  [2];  [1];  [2];  [1];  [3];  [2];  [6];  [6];  [6];  [6];  [2];  [4];  [2]
  1. Biology Department, University of Massachusetts, Amherst MA 01003 USA, Plant Biology Graduate Program, University of Massachusetts, Amherst MA 01003 USA
  2. Biology Department, University of Massachusetts, Amherst MA 01003 USA
  3. Biology Department, University of Massachusetts, Amherst MA 01003 USA, Molecular and Cellular Biology Graduate Program, University of Massachusetts, Amherst MA 01003 USA
  4. Department of Microbiology and Plant Biology, University of Oklahoma, Norman OK 73019 USA
  5. Department of Crop and Soil Sciences, Washington State University, Pullman WA 99164 USA
  6. DOE Joint Genome Institute, Walnut Creek CA 94598 USA
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1469734
Grant/Contract Number:  
FG02-08ER64700DE; SC0006641; SC006904; AC02-05CH11231
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
The Plant Journal
Additional Journal Information:
Journal Name: The Plant Journal Journal Volume: 96 Journal Issue: 3; Journal ID: ISSN 0960-7412
Publisher:
Wiley-Blackwell
Country of Publication:
United Kingdom
Language:
English

Citation Formats

Handakumbura, Pubudu P., Brow, Kathryn, Whitney, Ian P., Zhao, Kangmei, Sanguinet, Karen A., Lee, Scott J., Olins, Jennifer, Romero-Gamboa, Sandra P., Harrington, Michael J., Bascom, Carlisle J., MacKinnon, Kirk J-M., Veling, Michael T., Liu, Lifeng, Lee, Ji E., Vogel, John P., O'Malley, Ronan C., Bezanilla, Magdalena, Bartley, Laura E., and Hazen, Samuel P. SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae. United Kingdom: N. p., 2018. Web. doi:10.1111/tpj.14047.
Handakumbura, Pubudu P., Brow, Kathryn, Whitney, Ian P., Zhao, Kangmei, Sanguinet, Karen A., Lee, Scott J., Olins, Jennifer, Romero-Gamboa, Sandra P., Harrington, Michael J., Bascom, Carlisle J., MacKinnon, Kirk J-M., Veling, Michael T., Liu, Lifeng, Lee, Ji E., Vogel, John P., O'Malley, Ronan C., Bezanilla, Magdalena, Bartley, Laura E., & Hazen, Samuel P. SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae. United Kingdom. doi:10.1111/tpj.14047.
Handakumbura, Pubudu P., Brow, Kathryn, Whitney, Ian P., Zhao, Kangmei, Sanguinet, Karen A., Lee, Scott J., Olins, Jennifer, Romero-Gamboa, Sandra P., Harrington, Michael J., Bascom, Carlisle J., MacKinnon, Kirk J-M., Veling, Michael T., Liu, Lifeng, Lee, Ji E., Vogel, John P., O'Malley, Ronan C., Bezanilla, Magdalena, Bartley, Laura E., and Hazen, Samuel P. Wed . "SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae". United Kingdom. doi:10.1111/tpj.14047.
@article{osti_1469734,
title = {SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae},
author = {Handakumbura, Pubudu P. and Brow, Kathryn and Whitney, Ian P. and Zhao, Kangmei and Sanguinet, Karen A. and Lee, Scott J. and Olins, Jennifer and Romero-Gamboa, Sandra P. and Harrington, Michael J. and Bascom, Carlisle J. and MacKinnon, Kirk J-M. and Veling, Michael T. and Liu, Lifeng and Lee, Ji E. and Vogel, John P. and O'Malley, Ronan C. and Bezanilla, Magdalena and Bartley, Laura E. and Hazen, Samuel P.},
abstractNote = {},
doi = {10.1111/tpj.14047},
journal = {The Plant Journal},
number = 3,
volume = 96,
place = {United Kingdom},
year = {2018},
month = {9}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.1111/tpj.14047

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Cited by: 2 works
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Works referenced in this record:

Plant Body Weight-Induced Secondary Growth in Arabidopsis and Its Transcription Phenotype Revealed by Whole-Transcriptome Profiling
journal, June 2004

  • Ko, Jae-Heung; Han, Kyung-Hwan; Park, Sunchung
  • Plant Physiology, Vol. 135, Issue 2
  • DOI: 10.1104/pp.104.038844

Vectors for multi-color bimolecular fluorescence complementation to investigate protein-protein interactions in living plant cells
journal, January 2008


MYB83 Is a Direct Target of SND1 and Acts Redundantly with MYB46 in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis
journal, October 2009

  • McCarthy, R. L.; Zhong, R.; Ye, Z. -H.
  • Plant and Cell Physiology, Vol. 50, Issue 11
  • DOI: 10.1093/pcp/pcp139

A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation
journal, July 2016

  • Wong, Darren Chern Jan; Schlechter, Rudolf; Vannozzi, Alessandro
  • DNA Research, Vol. 23, Issue 5
  • DOI: 10.1093/dnares/dsw028

Expansion and Diversification of the Populus R2R3-MYB Family of Transcription Factors
journal, December 2008

  • Wilkins, Olivia; Nahal, Hardeep; Foong, Justin
  • Plant Physiology, Vol. 149, Issue 2
  • DOI: 10.1104/pp.108.132795

Molecular characterization of EgMYB1, a putative transcriptional repressor of the lignin biosynthetic pathway
journal, November 2007


Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis
journal, January 2012


Lignin modification improves fermentable sugar yields for biofuel production
journal, June 2007

  • Chen, Fang; Dixon, Richard A.
  • Nature Biotechnology, Vol. 25, Issue 7, p. 759-761
  • DOI: 10.1038/nbt1316

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis
journal, January 2012


PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species
journal, March 2011

  • Mutwil, Marek; Klie, Sebastian; Tohge, Takayuki
  • The Plant Cell, Vol. 23, Issue 3
  • DOI: 10.1105/tpc.111.083667

Disrupting the cinnamyl alcohol dehydrogenase 1 gene ( BdCAD1 ) leads to altered lignification and improved saccharification in Brachypodium distachyon
journal, December 2012

  • Bouvier d'Yvoire, Madeleine; Bouchabke-Coussa, Oumaya; Voorend, Wannes
  • The Plant Journal, Vol. 73, Issue 3
  • DOI: 10.1111/tpj.12053

The MYB46/MYB83-mediated transcriptional regulatory programme is a gatekeeper of secondary wall biosynthesis
journal, July 2014

  • Ko, J. -H.; Jeon, H. -W.; Kim, W. -C.
  • Annals of Botany, Vol. 114, Issue 6
  • DOI: 10.1093/aob/mcu126

The MYB46 Transcription Factor Is a Direct Target of SND1 and Regulates Secondary Wall Biosynthesis in Arabidopsis
journal, September 2007

  • Zhong, R.; Richardson, E. A.; Ye, Z.-H.
  • The Plant Cell Online, Vol. 19, Issue 9, p. 2776-2792
  • DOI: 10.1105/tpc.107.053678

Transcriptional Activation of Secondary Wall Biosynthesis by Rice and Maize NAC and MYB Transcription Factors
journal, September 2011

  • Zhong, R.; Lee, C.; McCarthy, R. L.
  • Plant and Cell Physiology, Vol. 52, Issue 10
  • DOI: 10.1093/pcp/pcr123

A TILLING Platform for Functional Genomics in Brachypodium distachyon
journal, June 2013


AtMYB61, an R2R3-MYB Transcription Factor Controlling Stomatal Aperture in Arabidopsis thaliana
journal, July 2005


Biological conversion assay using Clostridium phytofermentans to estimate plant feedstock quality
journal, January 2012

  • Lee, Scott J.; Warnick, Thomas A.; Pattathil, Sivakumar
  • Biotechnology for Biofuels, Vol. 5, Issue 1
  • DOI: 10.1186/1754-6834-5-5

ZmMYB31 directly represses maize lignin genes and redirects the phenylpropanoid metabolic flux: ZmMYB31 controls phenylpropanoids
journal, October 2010


A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis
journal, October 2008


Evolutionary conservation of the transcriptional network regulating secondary cell wall biosynthesis
journal, November 2010


Agrobacterium-mediated transformation and inbred line development in the model grass Brachypodium distachyon
journal, January 2006

  • Vogel, John P.; Garvin, David F.; Leong, Oymon M.
  • Plant Cell, Tissue and Organ Culture, Vol. 84, Issue 2
  • DOI: 10.1007/s11240-005-9023-9

An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets
journal, August 2007


The Eucalyptus grandis R2R3-MYB transcription factor family: evidence for woody growth-related evolution and function
journal, September 2014

  • Soler, Marçal; Camargo, Eduardo Leal Oliveira; Carocha, Victor
  • New Phytologist, Vol. 206, Issue 4
  • DOI: 10.1111/nph.13039

The Evolution of the Vascular Tissue of Plants
journal, September 1902

  • Worsdell, W. C.
  • Botanical Gazette, Vol. 34, Issue 3
  • DOI: 10.1086/328281

Genome-wide analysis of the R2R3-MYB transcription factor gene family in sweet orange (Citrus sinensis)
journal, July 2014


Overexpression of SbMyb60 impacts phenylpropanoid biosynthesis and alters secondary cell wall composition in Sorghum bicolor
journal, January 2016

  • Scully, Erin D.; Gries, Tammy; Sarath, Gautam
  • The Plant Journal, Vol. 85, Issue 3
  • DOI: 10.1111/tpj.13112

Global Analysis of Arabidopsis Gene Expression Uncovers a Complex Array of Changes Impacting Pathogen Response and Cell Cycle during Geminivirus Infection
journal, July 2008

  • Ascencio-Ibáñez, José Trinidad; Sozzani, Rosangela; Lee, Tae-Jin
  • Plant Physiology, Vol. 148, Issue 1
  • DOI: 10.1104/pp.108.121038

RNA Interference in the Moss Physcomitrella patens
journal, October 2003

  • Bezanilla, Magdalena; Pan, Aihong; Quatrano, Ralph S.
  • Plant Physiology, Vol. 133, Issue 2
  • DOI: 10.1104/pp.103.024901

Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana
journal, January 2012


Cellulosic Biofuels
journal, June 2009


Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon
journal, January 2013

  • Trabucco, Gina M.; Matos, Dominick A.; Lee, Scott J.
  • BMC Biotechnology, Vol. 13, Issue 1
  • DOI: 10.1186/1472-6750-13-61

Transcription switches for protoxylem and metaxylem vessel formation
journal, August 2005


At MYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network
journal, June 2012


Xylem tissue specification, patterning, and differentiation mechanisms
journal, November 2012

  • Schuetz, Mathias; Smith, Rebecca; Ellis, Brian
  • Journal of Experimental Botany, Vol. 64, Issue 1
  • DOI: 10.1093/jxb/ers287

Perturbation of Brachypodium distachyon CELLULOSE SYNTHASE A4 or 7 results in abnormal cell walls
journal, January 2013

  • Handakumbura, Pubudu P.; Matos, Dominick A.; Osmont, Karen S.
  • BMC Plant Biology, Vol. 13, Issue 1
  • DOI: 10.1186/1471-2229-13-131

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
journal, July 2002


Transcriptome Changes for Arabidopsis in Response to Salt, Osmotic, and Cold Stress
journal, December 2002

  • Kreps, Joel A.; Wu, Yajun; Chang, Hur-Song
  • Plant Physiology, Vol. 130, Issue 4
  • DOI: 10.1104/pp.008532

Development and status of dedicated energy crops in the United States
journal, June 2009


Ectopic expression of MYB46 identifies transcriptional regulatory genes involved in secondary wall biosynthesis in Arabidopsis
journal, November 2009


Genome-Wide Characterization of the Lignification Toolbox in Arabidopsis
journal, November 2003

  • Raes, Jeroen; Rohde, Antje; Christensen, Jørgen Holst
  • Plant Physiology, Vol. 133, Issue 3
  • DOI: 10.1104/pp.103.026484

Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids
journal, October 2008

  • Lyons, Eric; Pedersen, Brent; Kane, Josh
  • Plant Physiology, Vol. 148, Issue 4
  • DOI: 10.1104/pp.108.124867

Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks
journal, October 2011


Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR
journal, January 2008


Identification of Novel Genes in Arabidopsis Involved in Secondary Cell Wall Formation Using Expression Profiling and Reverse Genetics
journal, June 2005

  • Brown, David M.; Zeef, Leo A. H.; Ellis, Joanne
  • The Plant Cell, Vol. 17, Issue 8
  • DOI: 10.1105/tpc.105.031542

Profilin Is Essential for Tip Growth in the Moss Physcomitrella patens
journal, November 2007

  • Vidali, Luis; Augustine, Robert C.; Kleinman, Ken P.
  • The Plant Cell, Vol. 19, Issue 11
  • DOI: 10.1105/tpc.107.053413

Identification of Transcription Factors Involved in Rice Secondary Cell Wall Formation
journal, October 2013

  • Hirano, Ko; Kondo, Mari; Aya, Koichiro
  • Plant and Cell Physiology, Vol. 54, Issue 11
  • DOI: 10.1093/pcp/pct122

MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes
journal, December 2011

  • Zhong, Ruiqin; Ye, Zheng-Hua
  • Plant and Cell Physiology, Vol. 53, Issue 2
  • DOI: 10.1093/pcp/pcr185

Cell Walls and the Developmental Anatomy of the Brachypodium distachyon Stem Internode
journal, November 2013


MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
journal, May 2011

  • Tamura, K.; Peterson, D.; Peterson, N.
  • Molecular Biology and Evolution, Vol. 28, Issue 10
  • DOI: 10.1093/molbev/msr121

Transcriptional Regulatory Network Analysis of MYB Transcription Factor Family Genes in Rice
journal, December 2015

  • Smita, Shuchi; Katiyar, Amit; Chinnusamy, Viswanathan
  • Frontiers in Plant Science, Vol. 6
  • DOI: 10.3389/fpls.2015.01157

Genome-Wide Identification and Evolutionary and Expression Analyses of MYB-Related Genes in Land Plants
journal, May 2013


Two classes of cis sequences contribute to tissue-specific expression of a PAL2 promoter in transgenic tobacco
journal, June 1995


MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
journal, February 2012

  • Ronquist, Fredrik; Teslenko, Maxim; van der Mark, Paul
  • Systematic Biology, Vol. 61, Issue 3
  • DOI: 10.1093/sysbio/sys029

Navigating the transcriptional roadmap regulating plant secondary cell wall deposition
journal, January 2013

  • Hussey, Steven G.; Mizrachi, Eshchar; Creux, Nicky M.
  • Frontiers in Plant Science, Vol. 4
  • DOI: 10.3389/fpls.2013.00325

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
journal, September 2016


A Functional Genomics Approach Reveals CHE as a Component of the Arabidopsis Circadian Clock
journal, March 2009


HMMER web server: interactive sequence similarity searching
journal, May 2011

  • Finn, R. D.; Clements, J.; Eddy, S. R.
  • Nucleic Acids Research, Vol. 39, Issue suppl
  • DOI: 10.1093/nar/gkr367

QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR
journal, January 2008

  • Arvidsson, Samuel; Kwasniewski, Miroslaw; Riano-Pachon, Diego M.
  • BMC Bioinformatics, Vol. 9, Issue 1
  • DOI: 10.1186/1471-2105-9-465

An Arabidopsis gene regulatory network for secondary cell wall synthesis
journal, December 2014

  • Taylor-Teeples, M.; Lin, L.; de Lucas, M.
  • Nature, Vol. 517, Issue 7536
  • DOI: 10.1038/nature14099

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
journal, March 2011


MYB transcription factors in Arabidopsis
journal, October 2010


Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets
journal, June 2005

  • Persson, S.; Wei, H.; Milne, J.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 24
  • DOI: 10.1073/pnas.0503392102

High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3
journal, November 2007


Evolutionary History of the Grasses
journal, March 2001


The R2R3-MYB gene family in Arabidopsis thaliana
journal, October 2001

  • Stracke, Ralf; Werber, Martin; Weisshaar, Bernd
  • Current Opinion in Plant Biology, Vol. 4, Issue 5, p. 447-456
  • DOI: 10.1016/S1369-5266(00)00199-0

Unique aspects of the grass cell wall
journal, June 2008


MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis
journal, January 2009