skip to main content
DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Delocalized excitons in natural light-harvesting complexes

Authors:
;
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1465628
Grant/Contract Number:  
SC0001393
Resource Type:
Publisher's Accepted Manuscript
Journal Name:
Reviews of Modern Physics
Additional Journal Information:
Journal Name: Reviews of Modern Physics Journal Volume: 90 Journal Issue: 3; Journal ID: ISSN 0034-6861
Publisher:
American Physical Society
Country of Publication:
United States
Language:
English

Citation Formats

Jang, Seogjoo J., and Mennucci, Benedetta. Delocalized excitons in natural light-harvesting complexes. United States: N. p., 2018. Web. doi:10.1103/RevModPhys.90.035003.
Jang, Seogjoo J., & Mennucci, Benedetta. Delocalized excitons in natural light-harvesting complexes. United States. doi:10.1103/RevModPhys.90.035003.
Jang, Seogjoo J., and Mennucci, Benedetta. Tue . "Delocalized excitons in natural light-harvesting complexes". United States. doi:10.1103/RevModPhys.90.035003.
@article{osti_1465628,
title = {Delocalized excitons in natural light-harvesting complexes},
author = {Jang, Seogjoo J. and Mennucci, Benedetta},
abstractNote = {},
doi = {10.1103/RevModPhys.90.035003},
journal = {Reviews of Modern Physics},
number = 3,
volume = 90,
place = {United States},
year = {2018},
month = {8}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
DOI: 10.1103/RevModPhys.90.035003

Citation Metrics:
Cited by: 19 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Modeling of excitation dynamics in photosynthetic light-harvesting complexes: exact versus perturbative approaches
journal, May 2017

  • Novoderezhkin, Vladimir I.; van Grondelle, Rienk
  • Journal of Physics B: Atomic, Molecular and Optical Physics, Vol. 50, Issue 12
  • DOI: 10.1088/1361-6455/aa6b87

Structure-Based Calculations of the Optical Spectra of the Light-Harvesting Peridinin−Chlorophyll−Protein Complexes from Amphidinium carterae and Heterocapsa pygmaea
journal, July 1999

  • Carbonera, Donatella; Giacometti, Giovanni; Segre, Ulderico
  • The Journal of Physical Chemistry B, Vol. 103, Issue 30
  • DOI: 10.1021/jp9846429

Photosynthetic Light-Harvesting Is Tuned by the Heterogeneous Polarizable Environment of the Protein
journal, March 2011

  • Curutchet, Carles; Kongsted, Jacob; Muñoz-Losa, Aurora
  • Journal of the American Chemical Society, Vol. 133, Issue 9
  • DOI: 10.1021/ja110053y

Insight into the Structure of Photosynthetic LH2 Aggregate from Spectroscopy Simulations
journal, June 2012

  • Rancova, Olga; Sulskus, Juozas; Abramavicius, Darius
  • The Journal of Physical Chemistry B, Vol. 116, Issue 27
  • DOI: 10.1021/jp302817p

Ultrafast Exciton Motion in Photosynthetic Antenna Systems:  The FMO-Complex
journal, June 1998

  • Renger, Th.; May, V.
  • The Journal of Physical Chemistry A, Vol. 102, Issue 23
  • DOI: 10.1021/jp9800665

Solvation Effect of Bacteriochlorophyll Excitons in Light-Harvesting Complex LH2
journal, September 2007


Two-Dimensional Electronic Spectroscopy of Molecular Aggregates
journal, September 2009

  • Ginsberg, Naomi S.; Cheng, Yuan-Chung; Fleming, Graham R.
  • Accounts of Chemical Research, Vol. 42, Issue 9
  • DOI: 10.1021/ar9001075

Efficient and accurate simulations of two-dimensional electronic photon-echo signals: Illustration for a simple model of the Fenna–Matthews–Olson complex
journal, January 2010

  • Sharp, Leah Z.; Egorova, Dassia; Domcke, Wolfgang
  • The Journal of Chemical Physics, Vol. 132, Issue 1
  • DOI: 10.1063/1.3268705

Quantum mechanics for plants
journal, September 2004

  • Fleming, Graham R.; Scholes, Gregory D.
  • Nature, Vol. 431, Issue 7006
  • DOI: 10.1038/431256a

Exciton dynamics in chromophore aggregates with correlated environment fluctuations
journal, May 2011

  • Abramavicius, Darius; Mukamel, Shaul
  • The Journal of Chemical Physics, Vol. 134, Issue 17
  • DOI: 10.1063/1.3579455

Toward a Unified Modeling of Environment and Bridge-Mediated Contributions to Electronic Energy Transfer: A Fully Polarizable QM/MM/PCM Approach
journal, October 2012

  • Caprasecca, Stefano; Curutchet, Carles; Mennucci, Benedetta
  • Journal of Chemical Theory and Computation, Vol. 8, Issue 11
  • DOI: 10.1021/ct300620w

Noise-assisted energy transfer in quantum networks and light-harvesting complexes
journal, June 2010


Normal Mode Analysis of the Spectral Density of the Fenna–Matthews–Olson Light-Harvesting Protein: How the Protein Dissipates the Excess Energy of Excitons
journal, December 2012

  • Renger, Thomas; Klinger, Alexander; Steinecker, Florian
  • The Journal of Physical Chemistry B, Vol. 116, Issue 50
  • DOI: 10.1021/jp3094935

Influence of phonons on exciton transfer dynamics: comparison of the Redfield, Förster, and modified Redfield equations
journal, January 2002


Delocalization-Enhanced Long-Range Energy Transfer between Cryptophyte Algae PE545 Antenna Proteins
journal, May 2011

  • Hossein-Nejad, Hoda; Curutchet, Carles; Kubica, Aleksander
  • The Journal of Physical Chemistry B, Vol. 115, Issue 18
  • DOI: 10.1021/jp108397a

Theoretical examination of quantum coherence in a photosynthetic system at physiological temperature
journal, October 2009

  • Ishizaki, A.; Fleming, G. R.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 41
  • DOI: 10.1073/pnas.0908989106

Electronic resonance with anticorrelated pigment vibrations drives photosynthetic energy transfer outside the adiabatic framework
journal, December 2012

  • Tiwari, Vivek; Peters, William K.; Jonas, David M.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 4
  • DOI: 10.1073/pnas.1211157110

Environmental dynamics, correlations, and the emergence of noncanonical equilibrium states in open quantum systems
journal, September 2014


B800→B850 Energy Transfer Mechanism in Bacterial LH2 Complexes Investigated by B800 Pigment Exchange
journal, May 2000


Quantum mechanics of excitation transport in photosynthetic complexes: a key issues review
journal, July 2015


Excitonic Energy Level Structure and Pigment−Protein Interactions in the Recombinant Water-Soluble Chlorophyll Protein. I. Difference Fluorescence Line-Narrowing
journal, April 2011

  • Pieper, J.; Rätsep, M.; Trostmann, I.
  • The Journal of Physical Chemistry B, Vol. 115, Issue 14
  • DOI: 10.1021/jp111455g

Coherent versus Incoherent Energy Transfer and Trapping in Photosynthetic Antenna Complexes
journal, January 1996

  • Leegwater, Jan A.
  • The Journal of Physical Chemistry, Vol. 100, Issue 34
  • DOI: 10.1021/jp961448i

Vibrational Beatings Conceal Evidence of Electronic Coherence in the FMO Light-Harvesting Complex
journal, October 2014

  • Tempelaar, Roel; Jansen, Thomas L. C.; Knoester, Jasper
  • The Journal of Physical Chemistry B, Vol. 118, Issue 45
  • DOI: 10.1021/jp510074q

Constructing an Interpolated Potential Energy Surface of a Large Molecule: A Case Study with Bacteriochlorophyll a Model in the Fenna–Matthews–Olson Complex
journal, October 2016

  • Kim, Chang Woo; Rhee, Young Min
  • Journal of Chemical Theory and Computation, Vol. 12, Issue 11
  • DOI: 10.1021/acs.jctc.6b00647

Effect of Chromophore Potential Model on the Description of Exciton–Phonon Interactions
journal, July 2015

  • Kim, Chang Woo; Park, Jae Woo; Rhee, Young Min
  • The Journal of Physical Chemistry Letters, Vol. 6, Issue 15
  • DOI: 10.1021/acs.jpclett.5b01141

Excited-state structure and energy-transfer dynamics of the bacteriochlorophyll a antenna complex from Prosthecochloris aestuarii
journal, January 1991

  • Johnson, Stephen G.; Small, Gerald J.
  • The Journal of Physical Chemistry, Vol. 95, Issue 1
  • DOI: 10.1021/j100154a083

Perspective: Nonadiabatic dynamics theory
journal, December 2012

  • Tully, John C.
  • The Journal of Chemical Physics, Vol. 137, Issue 22
  • DOI: 10.1063/1.4757762

Light Absorption and Energy Transfer in the Antenna Complexes of Photosynthetic Organisms
journal, March 2016


Modeling environment effects on spectroscopies through QM/classical models
journal, January 2013

  • Mennucci, Benedetta
  • Physical Chemistry Chemical Physics, Vol. 15, Issue 18
  • DOI: 10.1039/c3cp44417a

Coherence in the B800 Ring of Purple Bacteria LH2
journal, January 2006


Absorption and CD Spectroscopy and Modeling of Various LH2 Complexes from Purple Bacteria
journal, April 2002


Single-residue insertion switches the quaternary structure and exciton states of cryptophyte light-harvesting proteins
journal, June 2014

  • Harrop, Stephen J.; Wilk, Krystyna E.; Dinshaw, Rayomond
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 26
  • DOI: 10.1073/pnas.1402538111

Toward an Integral Interpretation of the Optical Steady-State Spectra of the FMO-Complex of Prosthecochloris aestuarii . 2. Exciton Simulations
journal, December 1997

  • Louwe, R. J. W.; Vrieze, J.; Hoff, A. J.
  • The Journal of Physical Chemistry B, Vol. 101, Issue 51
  • DOI: 10.1021/jp9722162

On the alternatives for bath correlators and spectral densities from mixed quantum-classical simulations
journal, December 2012

  • Valleau, Stéphanie; Eisfeld, Alexander; Aspuru-Guzik, Alán
  • The Journal of Chemical Physics, Vol. 137, Issue 22
  • DOI: 10.1063/1.4769079

Single complex line shapes of the B850 band of LH2
journal, May 2003

  • Jang, Seogjoo; Silbey, Robert J.
  • The Journal of Chemical Physics, Vol. 118, Issue 20
  • DOI: 10.1063/1.1569240

Protein Arrangement Effects on the Exciton Dynamics in the PE555 Complex
journal, September 2016

  • Chandrasekaran, Suryanarayanan; Pothula, Karunakar Reddy; Kleinekathöfer, Ulrich
  • The Journal of Physical Chemistry B, Vol. 121, Issue 15
  • DOI: 10.1021/acs.jpcb.6b05803

Exciton Delocalization in the B850 Light-Harvesting Complex:  Comparison of Different Measures
journal, June 2001

  • Dahlbom, M.; Pullerits, T.; Mukamel, S.
  • The Journal of Physical Chemistry B, Vol. 105, Issue 23
  • DOI: 10.1021/jp004496i

Theory of single molecule line shapes of multichromophoric macromolecules
journal, May 2003

  • Jang, Seogjoo; Silbey, Robert J.
  • The Journal of Chemical Physics, Vol. 118, Issue 20
  • DOI: 10.1063/1.1569239

Growing-In of Optical Coherence in the FMO Antenna Complexes §
journal, September 2002

  • Prokhorenko, V. I.; Holzwarth, A. R.; Nowak, F. R.
  • The Journal of Physical Chemistry B, Vol. 106, Issue 38
  • DOI: 10.1021/jp025758e

Quantum Mechanical Continuum Solvation Models
journal, August 2005

  • Tomasi, Jacopo; Mennucci, Benedetta; Cammi, Roberto
  • Chemical Reviews, Vol. 105, Issue 8
  • DOI: 10.1021/cr9904009

The Electronic Couplings in Electron Transfer and Excitation Energy Transfer
journal, April 2009

  • Hsu, Chao-Ping
  • Accounts of Chemical Research, Vol. 42, Issue 4
  • DOI: 10.1021/ar800153f

Spectral properties of single light-harvesting complexes in bacterial photosynthesis
journal, March 2010

  • Saga, Yoshitaka; Shibata, Yutaka; Tamiaki, Hitoshi
  • Journal of Photochemistry and Photobiology C: Photochemistry Reviews, Vol. 11, Issue 1
  • DOI: 10.1016/j.jphotochemrev.2010.02.002

Oscillating anisotropies in a bacteriochlorophyll protein: Evidence for quantum beating between exciton levels
journal, November 1997


Exciton Dynamics in LH1 and LH2 of Rhodopseudomonas A cidophila and Rhodobium M arinum Probed with Accumulated Photon Echo and Pump−Probe Measurements
journal, December 2000

  • Lampoura, Stefania S.; van Grondelle, Rienk; van Stokkum, Ivo H. M.
  • The Journal of Physical Chemistry B, Vol. 104, Issue 50
  • DOI: 10.1021/jp0021289

Quantum Chemical Studies of Light Harvesting
journal, March 2016


Molecular response in one-photon absorption via natural thermal light vs. pulsed laser excitation
journal, November 2012

  • Brumer, P.; Shapiro, M.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 48
  • DOI: 10.1073/pnas.1211209109

Crystal structure of an integral membrane light-harvesting complex from photosynthetic bacteria
journal, April 1995

  • McDermott, G.; Prince, S. M.; Freer, A. A.
  • Nature, Vol. 374, Issue 6522
  • DOI: 10.1038/374517a0

Lindblad equations for strongly coupled populations and coherences in photosynthetic complexes
journal, May 2009

  • Palmieri, Benoit; Abramavicius, Darius; Mukamel, Shaul
  • The Journal of Chemical Physics, Vol. 130, Issue 20
  • DOI: 10.1063/1.3142485

Natural strategies for photosynthetic light harvesting
journal, June 2014

  • Croce, Roberta; van Amerongen, Herbert
  • Nature Chemical Biology, Vol. 10, Issue 7
  • DOI: 10.1038/nchembio.1555

Theoretical Study of Coherent Excitation Energy Transfer in Cryptophyte Phycocyanin 645 at Physiological Temperature
journal, March 2011

  • Huo, Pengfei; Coker, David F.
  • The Journal of Physical Chemistry Letters, Vol. 2, Issue 7
  • DOI: 10.1021/jz200301j

An exactly solvable model for coherent and incoherent exciton motion
journal, April 1973

  • Haken, H.; Strobl, G.
  • Zeitschrift für Physik A Hadrons and nuclei, Vol. 262, Issue 2
  • DOI: 10.1007/BF01399723

Exciton Band Structure in Bacterial Peripheral Light-Harvesting Complexes
journal, April 2012

  • Trinkunas, Gediminas; Zerlauskiene, Oksana; Urbonienė, Vidita
  • The Journal of Physical Chemistry B, Vol. 116, Issue 17
  • DOI: 10.1021/jp302042w

Quantum Coherent Energy Transfer over Varying Pathways in Single Light-Harvesting Complexes
journal, June 2013


The mechanism of energy transfer in the antenna of photosynthetic purple bacteria
journal, September 2001

  • Yang, Mino; Agarwal, Ritesh; Fleming, Graham R.
  • Journal of Photochemistry and Photobiology A: Chemistry, Vol. 142, Issue 2-3
  • DOI: 10.1016/S1010-6030(01)00504-4

Generalized Master Equation with Non-Markovian Multichromophoric Förster Resonance Energy Transfer for Modular Exciton Densities
journal, October 2014


Energy Flow in the Cryptophyte PE545 Antenna Is Directed by Bilin Pigment Conformation
journal, October 2012

  • Curutchet, Carles; Novoderezhkin, Vladimir I.; Kongsted, Jacob
  • The Journal of Physical Chemistry B, Vol. 117, Issue 16
  • DOI: 10.1021/jp305033d

Light-Harvesting Mechanism of Bacteria Exploits a Critical Interplay between the Dynamics of Transport and Trapping
journal, April 2010


Population and coherence dynamics in light harvesting complex II (LH2)
journal, August 2012

  • Yeh, Shu-Hao; Zhu, Jing; Kais, Sabre
  • The Journal of Chemical Physics, Vol. 137, Issue 8
  • DOI: 10.1063/1.4747622

Iterative linearized density matrix propagation for modeling coherent excitation energy transfer in photosynthetic light harvesting
journal, November 2010

  • Huo, P.; Coker, D. F.
  • The Journal of Chemical Physics, Vol. 133, Issue 18
  • DOI: 10.1063/1.3498901

Correlation-Dependent Coherent to Incoherent Transitions in Resonant Energy Transfer Dynamics
journal, October 2009


Overall energy conversion efficiency of a photosynthetic vesicle
journal, August 2016


A multi-state fragment charge difference approach for diabatic states in electron transfer: Extension and automation
journal, October 2013

  • Yang, Chou-Hsun; Hsu, Chao-Ping
  • The Journal of Chemical Physics, Vol. 139, Issue 15
  • DOI: 10.1063/1.4824906

Generalized projected dynamics for non-system observables of non-equilibrium quantum impurity models
journal, July 2013


Functional Subsystems and Quantum Redundancy in Photosynthetic Light Harvesting
journal, November 2011

  • Skochdopole, Nolan; Mazziotti, David A.
  • The Journal of Physical Chemistry Letters, Vol. 2, Issue 23
  • DOI: 10.1021/jz201154t

The Photosynthetic Apparatus of Rhodopseudomonas palustris: Structures and Organization
journal, April 2006

  • Scheuring, Simon; Gonçalves, Rui Pedro; Prima, Valérie
  • Journal of Molecular Biology, Vol. 358, Issue 1
  • DOI: 10.1016/j.jmb.2006.01.085

Dark States in the Light-Harvesting complex 2 Revealed by Two-dimensional Electronic Spectroscopy
journal, February 2016

  • Ferretti, Marco; Hendrikx, Ruud; Romero, Elisabet
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep20834

Coherent Multidimensional Optical Spectroscopy of Excitons in Molecular Aggregates; Quasiparticle versus Supermolecule Perspectives
journal, June 2009

  • Abramavicius, Darius; Palmieri, Benoit; Voronine, Dmitri V.
  • Chemical Reviews, Vol. 109, Issue 6
  • DOI: 10.1021/cr800268n

Stochastic Liouville, Langevin, Fokker–Planck, and Master Equation Approaches to Quantum Dissipative Systems
journal, August 2006


The Symmetrical Quasi-Classical Model for Electronically Non-Adiabatic Processes Applied to Energy Transfer Dynamics in Site-Exciton Models of Light-Harvesting Complexes
journal, February 2016

  • Cotton, Stephen J.; Miller, William H.
  • Journal of Chemical Theory and Computation, Vol. 12, Issue 3
  • DOI: 10.1021/acs.jctc.5b01178

Ultrafast excitation energy transfer dynamics in photosynthetic pigment–protein complexes
journal, March 2001


Preparational Effects on the Excitation Energy Transfer in the FMO Complex
journal, March 2012

  • Mühlbacher, Lothar; Kleinekathöfer, Ulrich
  • The Journal of Physical Chemistry B, Vol. 116, Issue 12
  • DOI: 10.1021/jp301444q

Energetic disorder and the B850-exciton states of individual light-harvesting 2 complexes from Rhodopseudomonas acidophila
journal, September 2004


Calculation of absorption spectra for light-harvesting systems using non-Markovian approaches as well as modified Redfield theory
journal, February 2006

  • Schröder, Markus; Kleinekathöfer, Ulrich; Schreiber, Michael
  • The Journal of Chemical Physics, Vol. 124, Issue 8
  • DOI: 10.1063/1.2171188

Quantum biology
journal, December 2012

  • Lambert, Neill; Chen, Yueh-Nan; Cheng, Yuan-Chung
  • Nature Physics, Vol. 9, Issue 1
  • DOI: 10.1038/nphys2474

Origin of Long-Lived Coherences in Light-Harvesting Complexes
journal, June 2012

  • Christensson, Niklas; Kauffmann, Harald F.; Pullerits, Tõnu
  • The Journal of Physical Chemistry B, Vol. 116, Issue 25
  • DOI: 10.1021/jp304649c

Does Coherence Enhance Transport in Photosynthesis?
journal, January 2013

  • Kassal, Ivan; Yuen-Zhou, Joel; Rahimi-Keshari, Saleh
  • The Journal of Physical Chemistry Letters, Vol. 4, Issue 3
  • DOI: 10.1021/jz301872b

Exciton Level Structure and Dynamics in Tubular Porphyrin Aggregates
journal, October 2014

  • Wan, Yan; Stradomska, Anna; Fong, Sarah
  • The Journal of Physical Chemistry C, Vol. 118, Issue 43
  • DOI: 10.1021/jp507435a

Exciton Delocalization and Initial Dephasing Dynamics of Purple Bacterial LH2
journal, August 2000

  • Book, L. D.; Ostafin, A. E.; Ponomarenko, N.
  • The Journal of Physical Chemistry B, Vol. 104, Issue 34
  • DOI: 10.1021/jp000485d

Theory of excitation energy transfer: from structure to function
journal, August 2009


Davydov Splitting of Excitons in Cyclic Bacteriochlorophyll a Nanoaggregates of Bacterial Light‐Harvesting Complexes between 4.5 and 263 K
journal, January 2011

  • Pajusalu, Mihkel; Rätsep, Margus; Trinkunas, Gediminas
  • ChemPhysChem, Vol. 12, Issue 3
  • DOI: 10.1002/cphc.201000913

Reduced Dynamics Need Not Be Completely Positive
journal, August 1994


Visualization of Excitonic Structure in the Fenna-Matthews-Olson Photosynthetic Complex by Polarization-Dependent Two-Dimensional Electronic Spectroscopy
journal, July 2008

  • Read, Elizabeth L.; Schlau-Cohen, Gabriela S.; Engel, Gregory S.
  • Biophysical Journal, Vol. 95, Issue 2
  • DOI: 10.1529/biophysj.107.128199

Integration of energy and electron transfer processes in the photosynthetic membrane of Rhodobacter sphaeroides
journal, October 2014

  • Cartron, Michaël L.; Olsen, John D.; Sener, Melih
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1837, Issue 10
  • DOI: 10.1016/j.bbabio.2014.02.003

The architecture and function of the light-harvesting apparatus of purple bacteria: from single molecules to in vivo membranes
journal, August 2006

  • Cogdell, Richard J.; Gall, Andrew; Köhler, Jürgen
  • Quarterly Reviews of Biophysics, Vol. 39, Issue 3
  • DOI: 10.1017/S0033583506004434

Fluorescence-excitation and Emission Spectroscopy on Single FMO Complexes
journal, August 2016

  • Löhner, Alexander; Ashraf , Khuram; Cogdell, Richard J.
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep31875

Low-temperature energy transfer in FMO trimers from the green photosynthetic bacterium Chlorobium tepidum
journal, May 1996

  • Savikhin, Sergei; Struve, Walter S.
  • Photosynthesis Research, Vol. 48, Issue 1-2
  • DOI: 10.1007/BF00041018

Molecular Level Design Principle behind Optimal Sizes of Photosynthetic LH2 Complex: Taming Disorder through Cooperation of Hydrogen Bonding and Quantum Delocalization
journal, February 2015

  • Jang, Seogjoo; Rivera, Eva; Montemayor, Daniel
  • The Journal of Physical Chemistry Letters, Vol. 6, Issue 6
  • DOI: 10.1021/acs.jpclett.5b00078

T WO -D IMENSIONAL F EMTOSECOND S PECTROSCOPY
journal, October 2003


On the Mechanism of Light Harvesting in Photosynthetic Purple Bacteria:  B800 to B850 Energy Transfer
journal, March 2000

  • Scholes, Gregory D.; Fleming, Graham R.
  • The Journal of Physical Chemistry B, Vol. 104, Issue 8
  • DOI: 10.1021/jp993435l

Theory of multichromophoric coherent resonance energy transfer: A polaronic quantum master equation approach
journal, July 2011

  • Jang, Seogjoo
  • The Journal of Chemical Physics, Vol. 135, Issue 3
  • DOI: 10.1063/1.3608914

On the Shape of the Phonon Spectral Density in Photosynthetic Complexes
journal, June 2013

  • Kell, Adam; Feng, Ximao; Reppert, Mike
  • The Journal of Physical Chemistry B, Vol. 117, Issue 24
  • DOI: 10.1021/jp405094p

Time-Dependent Atomistic View on the Electronic Relaxation in Light-Harvesting System II
journal, September 2010

  • Olbrich, Carsten; Kleinekathöfer, Ulrich
  • The Journal of Physical Chemistry B, Vol. 114, Issue 38
  • DOI: 10.1021/jp106542v

Fourth-order quantum master equation and its Markovian bath limit
journal, February 2002

  • Jang, Seogjoo; Cao, Jianshu; Silbey, Robert J.
  • The Journal of Chemical Physics, Vol. 116, Issue 7
  • DOI: 10.1063/1.1445105

Calculations of Spectroscopic Properties of the LH2 Bacteriochlorophyll−Protein Antenna Complex from Rhodopseudomonas acidophila
journal, June 1997

  • Alden, R. G.; Johnson, E.; Nagarajan, V.
  • The Journal of Physical Chemistry B, Vol. 101, Issue 23
  • DOI: 10.1021/jp970005r

Coherence in Energy Transfer and Photosynthesis
journal, April 2015


Environment-assisted quantum walks in photosynthetic energy transfer
journal, November 2008

  • Mohseni, Masoud; Rebentrost, Patrick; Lloyd, Seth
  • The Journal of Chemical Physics, Vol. 129, Issue 17
  • DOI: 10.1063/1.3002335

Long-Lived Electronic Coherence in Dissipative Exciton Dynamics of Light-Harvesting Complexes
journal, September 2012

  • Kreisbeck, Christoph; Kramer, Tobias
  • The Journal of Physical Chemistry Letters, Vol. 3, Issue 19
  • DOI: 10.1021/jz3012029

How Solvent Controls Electronic Energy Transfer and Light Harvesting
journal, June 2007

  • Scholes, Gregory D.; Curutchet, Carles; Mennucci, Benedetta
  • The Journal of Physical Chemistry B, Vol. 111, Issue 25
  • DOI: 10.1021/jp072540p

Atomistic Study of the Long-Lived Quantum Coherences in the Fenna-Matthews-Olson Complex
journal, February 2012

  • Shim, Sangwoo; Rebentrost, Patrick; Valleau, Stéphanie
  • Biophysical Journal, Vol. 102, Issue 3
  • DOI: 10.1016/j.bpj.2011.12.021

Low temperature spectroscopy of proteins. Part II: Experiments with single protein complexes☆
journal, March 2007


Emitting Excitonic Polaron States in Core LH1 and Peripheral LH2 Bacterial Light-Harvesting Complexes
journal, July 2004

  • Timpmann, Kõu; Rätsep, Margus; Hunter, C. Neil
  • The Journal of Physical Chemistry B, Vol. 108, Issue 29
  • DOI: 10.1021/jp049165a

Realistic vs sudden turn-on of natural incoherent light: Coherences and dynamics in molecular excitation and internal conversion
journal, December 2015

  • Grinev, Timur; Brumer, Paul
  • The Journal of Chemical Physics, Vol. 143, Issue 24
  • DOI: 10.1063/1.4938028

Atomistic Study of Energy Funneling in the Light-Harvesting Complex of Green Sulfur Bacteria
journal, January 2014

  • Huh, Joonsuk; Saikin, Semion K.; Brookes, Jennifer C.
  • Journal of the American Chemical Society, Vol. 136, Issue 5
  • DOI: 10.1021/ja412035q

Energy transfer in structured and unstructured environments: Master equations beyond the Born-Markov approximations
journal, January 2016

  • Iles-Smith, Jake; Dijkstra, Arend G.; Lambert, Neill
  • The Journal of Chemical Physics, Vol. 144, Issue 4
  • DOI: 10.1063/1.4940218

Excitation Wavelength-Dependent Electron−Phonon and Electron−Vibrational Coupling in the CP29 Antenna Complex of Green Plants
journal, January 2008

  • Rätsep, Margus; Pieper, Jörg; Irrgang, Klaus-Dieter
  • The Journal of Physical Chemistry B, Vol. 112, Issue 1
  • DOI: 10.1021/jp075170d

Statistics of Optical Spectra from Single-Ring Aggregates and Its Application to LH2
journal, December 2000

  • Mostovoy, Maxim V.; Knoester, Jasper
  • The Journal of Physical Chemistry B, Vol. 104, Issue 51
  • DOI: 10.1021/jp001519k

Mediation of Ultrafast Light-Harvesting by a Central Dimer in Phycoerythrin 545 Studied by Transient Absorption and Global Analysis
journal, July 2005

  • Doust, Alexander B.; van Stokkum, Ivo H. M.; Larsen, Delmar S.
  • The Journal of Physical Chemistry B, Vol. 109, Issue 29
  • DOI: 10.1021/jp051173j

The Organization of LH2 Complexes in Membranes from Rhodobacter sphaeroides
journal, August 2008

  • Olsen, John D.; Tucker, Jaimey D.; Timney, John A.
  • Journal of Biological Chemistry, Vol. 283, Issue 45
  • DOI: 10.1074/jbc.M804824200

Characterization of the Static Disorder in the B850 Band of LH2
journal, July 2001

  • Jang, Seogjoo; Dempster, Sara E.; Silbey, Robert J.
  • The Journal of Physical Chemistry B, Vol. 105, Issue 28
  • DOI: 10.1021/jp010169e

Interpolated Mechanics–Molecular Mechanics Study of Internal Rotation Dynamics of the Chromophore Unit in Blue Fluorescent Protein and Its Variants
journal, August 2012

  • Park, Jae Woo; Rhee, Young Min
  • The Journal of Physical Chemistry B, Vol. 116, Issue 36
  • DOI: 10.1021/jp306257t

The crystal structure of the light-harvesting complex II (B800–850) from Rhodospirillum molischianum
journal, May 1996


Local and nonlocal approximation for a simple quantum system
journal, January 2001

  • Palenberg, M. A.; Silbey, R. J.; Warns, C.
  • The Journal of Chemical Physics, Vol. 114, Issue 10
  • DOI: 10.1063/1.1330213

Evolution of a light-harvesting protein by addition of new subunits and rearrangement of conserved elements: Crystal structure of a cryptophyte phycoerythrin at 1.63-A resolution
journal, August 1999

  • Wilk, K. E.; Harrop, S. J.; Jankova, L.
  • Proceedings of the National Academy of Sciences, Vol. 96, Issue 16
  • DOI: 10.1073/pnas.96.16.8901

Quantitative investigations of quantum coherence for a light-harvesting protein at conditions simulating photosynthesis
journal, January 2012

  • Turner, Daniel B.; Dinshaw, Rayomond; Lee, Kyung-Koo
  • Physical Chemistry Chemical Physics, Vol. 14, Issue 14
  • DOI: 10.1039/c2cp23670b

Generalized quantum master equations in and out of equilibrium: When can one win?
journal, May 2016

  • Kelly, Aaron; Montoya-Castillo, Andrés; Wang, Lu
  • The Journal of Chemical Physics, Vol. 144, Issue 18
  • DOI: 10.1063/1.4948612

The dynamics of structural deformations of immobilized single light-harvesting complexes
journal, September 1999

  • Bopp, M. A.; Sytnik, A.; Howard, T. D.
  • Proceedings of the National Academy of Sciences, Vol. 96, Issue 20
  • DOI: 10.1073/pnas.96.20.11271

Static and Dynamic Disorder in Bacterial Light-Harvesting Complex LH2: A 2DES Simulation Study
journal, June 2014

  • Rancova, Olga; Abramavicius, Darius
  • The Journal of Physical Chemistry B, Vol. 118, Issue 27
  • DOI: 10.1021/jp5043156

Excitation Energies in Solution: The Fully Polarizable QM/MM/PCM Method
journal, March 2011

  • Steindal, Arnfinn Hykkerud; Ruud, Kenneth; Frediani, Luca
  • The Journal of Physical Chemistry B, Vol. 115, Issue 12
  • DOI: 10.1021/jp1101913

Nonequilibrium generalization of Förster–Dexter theory for excitation energy transfer
journal, January 2002


Excited state dynamics in photosynthetic reaction center and light harvesting complex 1
journal, August 2012

  • Strümpfer, Johan; Schulten, Klaus
  • The Journal of Chemical Physics, Vol. 137, Issue 6
  • DOI: 10.1063/1.4738953

Optimization of Exciton Trapping in Energy Transfer Processes
journal, December 2009

  • Cao, Jianshu; Silbey, Robert J.
  • The Journal of Physical Chemistry A, Vol. 113, Issue 50
  • DOI: 10.1021/jp9032589

An Ab Initio Description of the Excitonic Properties of LH2 and Their Temperature Dependence
journal, October 2016

  • Cupellini, Lorenzo; Jurinovich, Sandro; Campetella, Marco
  • The Journal of Physical Chemistry B, Vol. 120, Issue 44
  • DOI: 10.1021/acs.jpcb.6b06585

Theory and calculation for the electronic coupling in excitation energy transfer
journal, August 2013

  • You, Zhi-Qiang; Hsu, Chao-Ping
  • International Journal of Quantum Chemistry, Vol. 114, Issue 2
  • DOI: 10.1002/qua.24528

Two-dimensional electronic spectroscopy of bacteriochlorophyll a in solution: Elucidating the coherence dynamics of the Fenna-Matthews-Olson complex using its chromophore as a control
journal, September 2012

  • Fransted, Kelly A.; Caram, Justin R.; Hayes, Dugan
  • The Journal of Chemical Physics, Vol. 137, Issue 12
  • DOI: 10.1063/1.4752107

Theory of excitonic couplings in dielectric media: Foundation of Poisson-TrEsp method and application to photosystem I trimers
journal, September 2011


Electronic Excitation Transfer in the LH2 Complex of Rhodobacter sphaeroides
journal, January 1996

  • Jimenez, Ralph; Dikshit, Srivatsan N.; Bradforth, Stephen E.
  • The Journal of Physical Chemistry, Vol. 100, Issue 16
  • DOI: 10.1021/jp953074j

Ab Initio Molecular Orbital Calculations of Electronic Couplings in the LH2 Bacterial Light-Harvesting Complex of Rps. Acidophila
journal, April 1999

  • Scholes, Gregory D.; Gould, Ian R.; Cogdell, Richard J.
  • The Journal of Physical Chemistry B, Vol. 103, Issue 13
  • DOI: 10.1021/jp9839753

Real-time path-integral approach to quantum coherence and dephasing in nonadiabatic transitions and nonlinear optical response
journal, January 1993


How Quantum Coherence Assists Photosynthetic Light-Harvesting
journal, January 2012

  • Strümpfer, J.; Şener, M.; Schulten, K.
  • The Journal of Physical Chemistry Letters, Vol. 3, Issue 4
  • DOI: 10.1021/jz201459c

Influence of Force Fields and Quantum Chemistry Approach on Spectral Densities of BChl a in Solution and in FMO Proteins
journal, July 2015

  • Chandrasekaran, Suryanarayanan; Aghtar, Mortaza; Valleau, Stéphanie
  • The Journal of Physical Chemistry B, Vol. 119, Issue 31
  • DOI: 10.1021/acs.jpcb.5b03654

Excitation energy transfer (EET) between molecules in condensed matter: A novel application of the polarizable continuum model (PCM)
journal, April 2004

  • Iozzi, Maria Francesca; Mennucci, Benedetta; Tomasi, Jacopo
  • The Journal of Chemical Physics, Vol. 120, Issue 15
  • DOI: 10.1063/1.1669389

Spectral hole burning: examples from photosynthesis
journal, August 2009


Parallel multireference configuration interaction calculations on mini-β-carotenes and β-carotene
journal, January 2009

  • Kleinschmidt, Martin; Marian, Christel M.; Waletzke, Mirko
  • The Journal of Chemical Physics, Vol. 130, Issue 4
  • DOI: 10.1063/1.3062842

Exciton–vibrational coupling in the dynamics and spectroscopy of Frenkel excitons in molecular aggregates
journal, March 2015


Accuracy of perturbative master equations
journal, March 2011


Atomic coordinates for the chlorophyll core of a bacteriochlorophyll a-protein from green photosynthetic bacteria
journal, April 1977

  • Fenna, R. E.; Eyck, L. F. Ten; Matthews, B. W.
  • Biochemical and Biophysical Research Communications, Vol. 75, Issue 3
  • DOI: 10.1016/0006-291X(77)91536-4

The origin of the split B800 absorption peak in the LH2 complexes from Allochromatium vinosum
journal, August 2014

  • Löhner, Alexander; Carey, Anne-Marie; Hacking, Kirsty
  • Photosynthesis Research, Vol. 123, Issue 1
  • DOI: 10.1007/s11120-014-0036-2

 -Helices direct excitation energy flow in the Fenna Matthews Olson protein
journal, October 2007

  • Muh, F.; Madjet, M. E. -A.; Adolphs, J.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 43
  • DOI: 10.1073/pnas.0708222104

Energy Transfer and Spectral Dynamics of the Three Lowest Energy Q y -States of the Fenna-Matthews-Olson Antenna Complex
journal, July 1999

  • Rätsep, M.; Blankenship, R. E.; Small, G. J.
  • The Journal of Physical Chemistry B, Vol. 103, Issue 27
  • DOI: 10.1021/jp990918g

Carotenoids and Light-Harvesting: From DFT/MRCI to the Tamm–Dancoff Approximation
journal, January 2015

  • Andreussi, Oliviero; Knecht, Stefan; Marian, Christel M.
  • Journal of Chemical Theory and Computation, Vol. 11, Issue 2
  • DOI: 10.1021/ct5011246

Polarizable Force Fields and Polarizable Continuum Model: A Fluctuating Charges/PCM Approach. 1. Theory and Implementation
journal, September 2011

  • Lipparini, Filippo; Barone, Vincenzo
  • Journal of Chemical Theory and Computation, Vol. 7, Issue 11
  • DOI: 10.1021/ct200376z

Two-dimensional electronic spectroscopy of the B800-B820 light-harvesting complex
journal, August 2006

  • Zigmantas, D.; Read, E. L.; Mancal, T.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 34
  • DOI: 10.1073/pnas.0602961103

Nonequilibrium quantum dynamics in the condensed phase via the generalized quantum master equation
journal, July 2006

  • Zhang, Ming-Liang; Ka, Being J.; Geva, Eitan
  • The Journal of Chemical Physics, Vol. 125, Issue 4
  • DOI: 10.1063/1.2218342

Photosynthetic apparatus of purple bacteria
journal, February 2002

  • Hu, Xiche; Ritz, Thorsten; Damjanović, Ana
  • Quarterly Reviews of Biophysics, Vol. 35, Issue 1
  • DOI: 10.1017/S0033583501003754

Generalization of the Förster resonance energy transfer theory for quantum mechanical modulation of the donor-acceptor coupling
journal, November 2007

  • Jang, Seogjoo
  • The Journal of Chemical Physics, Vol. 127, Issue 17
  • DOI: 10.1063/1.2779031

Chlorophyll arrangement in a bacteriochlorophyll protein from Chlorobium limicola
journal, December 1975

  • Fenna, R. E.; Matthews, B. W.
  • Nature, Vol. 258, Issue 5536
  • DOI: 10.1038/258573a0

Multichromophoric Förster Resonance Energy Transfer from B800 to B850 in the Light Harvesting Complex 2:  Evidence for Subtle Energetic Optimization by Purple Bacteria
journal, June 2007

  • Jang, Seogjoo; Newton, Marshall D.; Silbey, Robert J.
  • The Journal of Physical Chemistry B, Vol. 111, Issue 24
  • DOI: 10.1021/jp070111l

From Atomistic Modeling to Excitation Transfer and Two-Dimensional Spectra of the FMO Light-Harvesting Complex
journal, July 2011

  • Olbrich, Carsten; Jansen, Thomas L. C.; Liebers, Jörg
  • The Journal of Physical Chemistry B, Vol. 115, Issue 26
  • DOI: 10.1021/jp202619a

Quantum-coherent energy transfer: implications for biology and new energy technologies
journal, August 2012

  • Olaya-Castro, Alexandra; Nazir, Ahsan; Fleming, Graham R.
  • Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 370, Issue 1972
  • DOI: 10.1098/rsta.2012.0192

Exciton-migration and three-pulse femtosecond optical spectroscopies of photosynthetic antenna complexes
journal, May 1998

  • Zhang, Wei Min; Meier, Torsten; Chernyak, Vladimir
  • The Journal of Chemical Physics, Vol. 108, Issue 18
  • DOI: 10.1063/1.476212

Excitation Dynamics in Phycoerythrin 545: Modeling of Steady-State Spectra and Transient Absorption with Modified Redfield Theory
journal, July 2010

  • Novoderezhkin, Vladimir I.; Doust, Alexander B.; Curutchet, Carles
  • Biophysical Journal, Vol. 99, Issue 2
  • DOI: 10.1016/j.bpj.2010.04.039

Efficient Pathways of Excitation Energy Transfer from Delocalized S 2 Excitons in the Peridinin–Chlorophyll a –Protein Complex
journal, April 2015

  • Bricker, William P.; Lo, Cynthia S.
  • The Journal of Physical Chemistry B, Vol. 119, Issue 18
  • DOI: 10.1021/jp511766j

Ultrafast light harvesting dynamics in the cryptophyte phycocyanin 645
journal, January 2007

  • Mirkovic, Tihana; Doust, Alexander B.; Kim, Jeongho
  • Photochemical & Photobiological Sciences
  • DOI: 10.1039/B704962E

Computational Modeling of Exciton-Bath Hamiltonians for Light Harvesting 2 and Light Harvesting 3 Complexes of Purple Photosynthetic Bacteria at Room Temperature
journal, March 2018

  • Montemayor, Daniel; Rivera, Eva; Jang, Seogjoo J.
  • The Journal of Physical Chemistry B, Vol. 122, Issue 14
  • DOI: 10.1021/acs.jpcb.8b00358

Atomic force microscopy of the bacterial photosynthetic apparatus: plain pictures of an elaborate machinery
journal, March 2009


Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature
journal, February 2010

  • Collini, Elisabetta; Wong, Cathy Y.; Wilk, Krystyna E.
  • Nature, Vol. 463, Issue 7281
  • DOI: 10.1038/nature08811

Exciton Structure and Energy Transfer in the Fenna–Matthews–Olson Complex
journal, April 2016

  • Thyrhaug, Erling; Žídek, Karel; Dostál, Jakub
  • The Journal of Physical Chemistry Letters, Vol. 7, Issue 9
  • DOI: 10.1021/acs.jpclett.6b00534

A new energy transfer channel from carotenoids to chlorophylls in purple bacteria
journal, July 2017


Thermal Light Cannot Be Represented as a Statistical Mixture of Single Pulses
journal, May 2015


Dephasing-assisted transport: quantum networks and biomolecules
journal, November 2008


Single-molecule spectroscopy reveals photosynthetic LH2 complexes switch between emissive states
journal, June 2013

  • Schlau-Cohen, G. S.; Wang, Q.; Southall, J.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 27
  • DOI: 10.1073/pnas.1310222110

Impact of environmentally induced fluctuations on quantum mechanically mixed electronic and vibrational pigment states in photosynthetic energy transfer and 2D electronic spectra
journal, June 2015

  • Fujihashi, Yuta; Fleming, Graham R.; Ishizaki, Akihito
  • The Journal of Chemical Physics, Vol. 142, Issue 21
  • DOI: 10.1063/1.4914302

Developing a Structure–Function Model for the Cryptophyte Phycoerythrin 545 Using Ultrahigh Resolution Crystallography and Ultrafast Laser Spectroscopy
journal, November 2004

  • Doust, Alexander B.; Marai, Christopher N. J.; Harrop, Stephen J.
  • Journal of Molecular Biology, Vol. 344, Issue 1
  • DOI: 10.1016/j.jmb.2004.09.044

The Fenna-Matthews-Olson Protein Revisited: A Fully Polarizable (TD)DFT/MM Description
journal, July 2014

  • Jurinovich, Sandro; Curutchet, Carles; Mennucci, Benedetta
  • ChemPhysChem, Vol. 15, Issue 15
  • DOI: 10.1002/cphc.201402244

Electronic Energy Transfer in Molecular Crystals
journal, October 1976


Polarons, localization, and excitonic coherence in superradiance of biological antenna complexes
journal, September 1997

  • Meier, T.; Zhao, Y.; Chernyak, V.
  • The Journal of Chemical Physics, Vol. 107, Issue 10
  • DOI: 10.1063/1.474746

The fundamental role of quantized vibrations in coherent light harvesting by cryptophyte algae
journal, November 2012

  • Kolli, Avinash; O’Reilly, Edward J.; Scholes, Gregory D.
  • The Journal of Chemical Physics, Vol. 137, Issue 17
  • DOI: 10.1063/1.4764100

Quantum entanglement in photosynthetic light-harvesting complexes
journal, April 2010

  • Sarovar, Mohan; Ishizaki, Akihito; Fleming, Graham R.
  • Nature Physics, Vol. 6, Issue 6
  • DOI: 10.1038/nphys1652

Quantum mechanical methods applied to excitation energy transfer: A comparative analysis on excitation energies and electronic couplings
journal, July 2008

  • Muñoz-Losa, A.; Curutchet, C.; Galván, I. Fdez.
  • The Journal of Chemical Physics, Vol. 129, Issue 3
  • DOI: 10.1063/1.2953716

Transform-limited-pulse representation of excitation with natural incoherent light
journal, January 2016

  • Chenu, Aurélia; Brumer, Paul
  • The Journal of Chemical Physics, Vol. 144, Issue 4
  • DOI: 10.1063/1.4940028

Vibrational vs. electronic coherences in 2D spectrum of molecular systems
journal, August 2012


Generalized-master-equation theory of excitation transfer
journal, June 1974


In situ mapping of the energy flow through the entire photosynthetic apparatus
journal, May 2016

  • Dostál, Jakub; Pšenčík, Jakub; Zigmantas, Donatas
  • Nature Chemistry, Vol. 8, Issue 7
  • DOI: 10.1038/nchem.2525

Experimental Implementations of Two-Dimensional Fourier Transform Electronic Spectroscopy
journal, April 2015


Calculation of Couplings and Energy-Transfer Pathways between the Pigments of LH2 by the ab Initio Transition Density Cube Method
journal, July 1998

  • Krueger, Brent P.; Scholes, Gregory D.; Fleming, Graham R.
  • The Journal of Physical Chemistry B, Vol. 102, Issue 27
  • DOI: 10.1021/jp9811171

Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems
journal, April 2007

  • Engel, Gregory S.; Calhoun, Tessa R.; Read, Elizabeth L.
  • Nature, Vol. 446, Issue 7137
  • DOI: 10.1038/nature05678

Two-dimensional electronic spectroscopy and photosynthesis: Fundamentals and applications to photosynthetic light-harvesting
journal, July 2011


Atomistic non-adiabatic dynamics of the LH2 complex with a GPU-accelerated ab initio exciton model
journal, January 2017

  • Sisto, Aaron; Stross, Clem; van der Kamp, Marc W.
  • Physical Chemistry Chemical Physics, Vol. 19, Issue 23
  • DOI: 10.1039/C7CP00492C

A combination of Kohn–Sham density functional theory and multi-reference configuration interaction methods
journal, October 1999

  • Grimme, Stefan; Waletzke, Mirko
  • The Journal of Chemical Physics, Vol. 111, Issue 13
  • DOI: 10.1063/1.479866

The Eighth Bacteriochlorophyll Completes the Excitation Energy Funnel in the FMO Protein
journal, December 2010

  • Schmidt am Busch, Marcel; Müh, Frank; El-Amine Madjet, Mohamed
  • The Journal of Physical Chemistry Letters, Vol. 2, Issue 2
  • DOI: 10.1021/jz101541b

Spatial and Electronic Correlations in the PE545 Light-Harvesting Complex
journal, January 2013

  • Viani, Lucas; Curutchet, Carles; Mennucci, Benedetta
  • The Journal of Physical Chemistry Letters, Vol. 4, Issue 3
  • DOI: 10.1021/jz301987u

Benchmarking Calculations of Excitonic Couplings between Bacteriochlorophylls
journal, December 2015


Single-Molecule Spectroscopy Unmasks the Lowest Exciton State of the B850 Assembly in LH2 from Rps. acidophila
journal, May 2014


Quantum coherence spectroscopy reveals complex dynamics in bacterial light-harvesting complex 2 (LH2)
journal, January 2012

  • Harel, E.; Engel, G. S.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 3
  • DOI: 10.1073/pnas.1110312109

Low-temperature single-molecule spectroscopy on photosynthetic pigment–protein complexes from purple bacteria
journal, June 2009


Theoretical Examination of Long-Range Energy Propagation in Nano-Engineered Light-Harvesting Antenna Arrays
journal, January 2012

  • Yang, Guangcan; Wu, Ning; Chen, Tuo
  • The Journal of Physical Chemistry C, Vol. 116, Issue 5
  • DOI: 10.1021/jp209293k

Mixed Quantum-Classical Description of Excitation Energy Transfer in a Model Fenna−Matthews−Olsen Complex
journal, March 2011

  • Kelly, Aaron; Rhee, Young Min
  • The Journal of Physical Chemistry Letters, Vol. 2, Issue 7
  • DOI: 10.1021/jz200059t

Combining classical molecular dynamics and quantum mechanical methods for the description of electronic excitations: The case of carotenoids
journal, January 2016

  • Prandi, Ingrid G.; Viani, Lucas; Andreussi, Oliviero
  • Journal of Computational Chemistry, Vol. 37, Issue 11
  • DOI: 10.1002/jcc.24286

A semiclassical generalized quantum master equation for an arbitrary system-bath coupling
journal, June 2004

  • Shi, Qiang; Geva, Eitan
  • The Journal of Chemical Physics, Vol. 120, Issue 22
  • DOI: 10.1063/1.1738109

The COSMO and COSMO-RS solvation models: The COSMO and COSMO-RS solvation models
journal, April 2011

  • Klamt, Andreas
  • Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 1, Issue 5
  • DOI: 10.1002/wcms.56

Optical line shapes of molecular aggregates: Hierarchical equations of motion method
journal, January 2009

  • Chen, Liping; Zheng, Renhui; Shi, Qiang
  • The Journal of Chemical Physics, Vol. 131, Issue 9
  • DOI: 10.1063/1.3213013

Pigment Organization and Transfer of Electronic Excitation in the Photosynthetic Unit of Purple Bacteria
journal, May 1997

  • Hu, Xiche; Ritz, Thorsten; Damjanović, Ana
  • The Journal of Physical Chemistry B, Vol. 101, Issue 19
  • DOI: 10.1021/jp963777g

Low-temperature spectroscopy of isolated FMO-protein and a membrane-free reaction center complex from the green sulfur bacteriumChlorobium tepidum
journal, July 1994

  • Miller, Mette; Cox, Raymond P.; Olson, John M.
  • Photosynthesis Research, Vol. 41, Issue 1
  • DOI: 10.1007/BF02184149

Energy transfer efficiency in the chromophore network strongly coupled to a vibrational mode
journal, November 2015


Correlated intermolecular coupling fluctuations in photosynthetic complexes
journal, February 2012

  • Vlaming, Sebastiaan M.; Silbey, Robert J.
  • The Journal of Chemical Physics, Vol. 136, Issue 5
  • DOI: 10.1063/1.3682988

Efficient energy transfer in light-harvesting systems: Quantum-classical comparison, flux network, and robustness analysis
journal, November 2012

  • Wu, Jianlan; Liu, Fan; Ma, Jian
  • The Journal of Chemical Physics, Vol. 137, Issue 17
  • DOI: 10.1063/1.4762839

On the Controversial Nature of the 825 nm Exciton Band in the FMO Protein Complex
journal, March 2014

  • Kell, Adam; Acharya, Khem; Zazubovich, Valter
  • The Journal of Physical Chemistry Letters, Vol. 5, Issue 8
  • DOI: 10.1021/jz5001165

Ultrafast absorption difference spectra of the Fenna-Matthews-Olson protein at 19 K: experiment and simulations
journal, January 1997


On the Interpretation of Quantum Coherent Beats Observed in Two-Dimensional Electronic Spectra of Photosynthetic Light Harvesting Complexes
journal, May 2011

  • Ishizaki, Akihito; Fleming, Graham R.
  • The Journal of Physical Chemistry B, Vol. 115, Issue 19
  • DOI: 10.1021/jp112406h

First-Principles Models for Biological Light-Harvesting: Phycobiliprotein Complexes from Cryptophyte Algae
journal, June 2017

  • Lee, Mi Kyung; Bravaya, Ksenia B.; Coker, David F.
  • Journal of the American Chemical Society, Vol. 139, Issue 23
  • DOI: 10.1021/jacs.7b01780

Fragment transition density method to calculate electronic coupling for excitation energy transfer
journal, June 2014

  • Voityuk, Alexander A.
  • The Journal of Chemical Physics, Vol. 140, Issue 24
  • DOI: 10.1063/1.4884944

Rerouting excitation transfers in the Fenna-Matthews-Olson complex
journal, September 2013


Computational methodologies and physical insights into electronic energy transfer in photosynthetic light-harvesting complexes
journal, January 2012

  • Pachón, Leonardo A.; Brumer, Paul
  • Physical Chemistry Chemical Physics, Vol. 14, Issue 29
  • DOI: 10.1039/c2cp40815e

On the generators of quantum dynamical semigroups
journal, June 1976

  • Lindblad, G.
  • Communications in Mathematical Physics, Vol. 48, Issue 2
  • DOI: 10.1007/BF01608499

Multireference Excitation Energies for Bacteriochlorophylls A within Light Harvesting System 2
journal, February 2016

  • Anda, André; Hansen, Thorsten; De Vico, Luca
  • Journal of Chemical Theory and Computation, Vol. 12, Issue 3
  • DOI: 10.1021/acs.jctc.5b01104

Exciton Self Trapping in Photosynthetic Pigment–Protein Complexes Studied by Single-Molecule Spectroscopy
journal, August 2012

  • Kunz, Ralf; Timpmann, Kõu; Southall, June
  • The Journal of Physical Chemistry B, Vol. 116, Issue 36
  • DOI: 10.1021/jp3040456

Phase space approach to theories of quantum dissipation
journal, October 1997

  • Kohen, D.; Marston, C. C.; Tannor, D. J.
  • The Journal of Chemical Physics, Vol. 107, Issue 13
  • DOI: 10.1063/1.474887

Accurate Long-Time Mixed Quantum-Classical Liouville Dynamics via the Transfer Tensor Method
journal, November 2016

  • Kananenka, Alexei A.; Hsieh, Chang-Yu; Cao, Jianshu
  • The Journal of Physical Chemistry Letters, Vol. 7, Issue 23
  • DOI: 10.1021/acs.jpclett.6b02389

Unraveling Exciton Relaxation and Energy Transfer in LH2 Photosynthetic Antennas
journal, October 2000

  • Timpmann, Kõu; Woodbury, Neal W.; Freiberg, Arvi
  • The Journal of Physical Chemistry B, Vol. 104, Issue 42
  • DOI: 10.1021/jp001993q

Highly efficient energy excitation transfer in light-harvesting complexes: The fundamental role of noise-assisted transport
journal, January 2009

  • Caruso, F.; Chin, A. W.; Datta, A.
  • The Journal of Chemical Physics, Vol. 131, Issue 10
  • DOI: 10.1063/1.3223548

Nature does not rely on long-lived electronic quantum coherence for photosynthetic energy transfer
journal, July 2017

  • Duan, Hong-Guang; Prokhorenko, Valentyn I.; Cogdell, Richard J.
  • Proceedings of the National Academy of Sciences, Vol. 114, Issue 32
  • DOI: 10.1073/pnas.1702261114

Modelling of oscillations in two-dimensional echo-spectra of the Fenna–Matthews–Olson complex
journal, February 2012


Efficient Energy Transfer in Light-Harvesting Systems, III: The Influence of the Eighth Bacteriochlorophyll on the Dynamics and Efficiency in FMO
journal, November 2011

  • Moix, Jeremy; Wu, Jianlan; Huo, Pengfei
  • The Journal of Physical Chemistry Letters, Vol. 2, Issue 24
  • DOI: 10.1021/jz201259v

Solvent Boundary Potentials for Hybrid QM/MM Computations Using Classical Drude Oscillators: A Fully Polarizable Model
journal, October 2012

  • Boulanger, Eliot; Thiel, Walter
  • Journal of Chemical Theory and Computation, Vol. 8, Issue 11
  • DOI: 10.1021/ct300722e

Vibrational and vibronic coherences in the dynamics of the FMO complex
journal, December 2016


Temperature Dependence of Excitation Transfer in LH2 of Rhodobacter sphaeroides
journal, December 1997

  • Pullerits, Tõnu; Hess, Susan; Herek, Jennifer L.
  • The Journal of Physical Chemistry B, Vol. 101, Issue 49
  • DOI: 10.1021/jp9720956

The native architecture of a photosynthetic membrane
journal, August 2004

  • Bahatyrova, Svetlana; Frese, Raoul N.; Siebert, C. Alistair
  • Nature, Vol. 430, Issue 7003
  • DOI: 10.1038/nature02823

Exciton Dynamics in FMO Bacteriochlorophyll Protein at Low Temperatures
journal, September 1997

  • Freiberg, Arvi; Lin, Su; Timpmann, Kõu
  • The Journal of Physical Chemistry B, Vol. 101, Issue 37
  • DOI: 10.1021/jp9633761

Is There Elliptic Distortion in the Light Harvesting Complex 2 of Purple Bacteria?
journal, November 2011

  • Jang, Seogjoo; Silbey, Robert J.; Kunz, Ralf
  • The Journal of Physical Chemistry B, Vol. 115, Issue 44
  • DOI: 10.1021/jp202344s

A Benchmark Study of Different Methods for Calculating One- And Two-Dimensional Optical Spectra
journal, October 2009

  • McRobbie, Porscha L.; Geva, Eitan
  • The Journal of Physical Chemistry A, Vol. 113, Issue 39
  • DOI: 10.1021/jp905305t

Environment-assisted quantum transport
journal, March 2009


Excitons in Chains of Dimers
journal, September 1997

  • Liuolia, Vladas; Valkunas, Leonas; van Grondelle, Rienk
  • The Journal of Physical Chemistry B, Vol. 101, Issue 37
  • DOI: 10.1021/jp963972v

Enhancement of coherent energy transport by disorder and temperature in light harvesting processes
journal, September 2012

  • Xiong, Shi-Jie; Xiong, Ye; Zhao, Yang
  • The Journal of Chemical Physics, Vol. 137, Issue 9
  • DOI: 10.1063/1.4748571

Microscopic Theory of Exciton Annihilation:  Application to the LH2 Antenna System
journal, November 2001

  • Brüggemann, Ben; Herek, Jennifer L.; Sundström, Villy
  • The Journal of Physical Chemistry B, Vol. 105, Issue 46
  • DOI: 10.1021/jp012072y

Efficient simulation of non-Markovian system-environment interaction
journal, February 2016


The role of non-equilibrium vibrational structures in electronic coherence and recoherence in pigment–protein complexes
journal, January 2013

  • Chin, A. W.; Prior, J.; Rosenbach, R.
  • Nature Physics, Vol. 9, Issue 2
  • DOI: 10.1038/nphys2515

Electronic excitation transfer in the photosynthetic unit: Reflections on work of William Arnold
journal, May 1996


Theoretical Analysis of the Energy Gap Dependence of the Reconstituted B800 → B850 Excitation Energy Transfer Rate in Bacterial LH2 Complexes
journal, August 2003

  • Kimura, A.; Kakitani, T.
  • The Journal of Physical Chemistry B, Vol. 107, Issue 31
  • DOI: 10.1021/jp034329t

Energy-scales convergence for optimal and robust quantum transport in photosynthetic complexes
journal, January 2014

  • Mohseni, M.; Shabani, A.; Lloyd, S.
  • The Journal of Chemical Physics, Vol. 140, Issue 3
  • DOI: 10.1063/1.4856795

Exciton Delocalization Probed by Excitation Annihilation in the Light-Harvesting Antenna LH2
journal, April 2001


Femtosecond photon echoes in molecular aggregates
journal, December 1997

  • Meier, T.; Chernyak, V.; Mukamel, S.
  • The Journal of Chemical Physics, Vol. 107, Issue 21
  • DOI: 10.1063/1.475169

Single-Molecule Fluorescence Spectroscopy of Photosynthetic Systems
journal, March 2016


Modeling of Fluorescence Quenching by Lutein in the Plant Light-Harvesting Complex LHCII
journal, December 2012

  • Duffy, C. D. P.; Chmeliov, J.; Macernis, M.
  • The Journal of Physical Chemistry B, Vol. 117, Issue 38
  • DOI: 10.1021/jp3110997

Non-Markovian quantum jumps in excitonic energy transfer
journal, November 2009

  • Rebentrost, Patrick; Chakraborty, Rupak; Aspuru-Guzik, Alán
  • The Journal of Chemical Physics, Vol. 131, Issue 18
  • DOI: 10.1063/1.3259838

Molecular basis of the exciton–phonon interactions in the PE545 light-harvesting complex
journal, January 2014

  • Viani, Lucas; Corbella, Marina; Curutchet, Carles
  • Phys. Chem. Chem. Phys., Vol. 16, Issue 30
  • DOI: 10.1039/C4CP01477D

Impact of Electronic Fluctuations and Their Description on the Exciton Dynamics in the Light-Harvesting Complex PE545
journal, February 2017

  • Aghtar, Mortaza; Kleinekathöfer, Ulrich; Curutchet, Carles
  • The Journal of Physical Chemistry B, Vol. 121, Issue 6
  • DOI: 10.1021/acs.jpcb.6b10772

Quantum Chemical Description of Absorption Properties and Excited-State Processes in Photosynthetic Systems
journal, November 2011


Modeling light-driven proton pumps in artificial photosynthetic reaction centers
journal, July 2009

  • Ghosh, Pulak Kumar; Smirnov, Anatoly Yu.; Nori, Franco
  • The Journal of Chemical Physics, Vol. 131, Issue 3
  • DOI: 10.1063/1.3170939

Static and Dynamic Protein Impact on Electronic Properties of Light-Harvesting Complex LH2
journal, December 2008

  • Zerlauskiene, O.; Trinkunas, G.; Gall, A.
  • The Journal of Physical Chemistry B, Vol. 112, Issue 49
  • DOI: 10.1021/jp803439w

Excited State Dynamics in FMO Antenna Complexes from Photosynthetic Green Sulfur Bacteria:  A Kinetic Model
journal, September 1999

  • Vulto, Simone I. E.; de Baat, Michiel A.; Neerken, Sieglinde
  • The Journal of Physical Chemistry B, Vol. 103, Issue 38
  • DOI: 10.1021/jp984702a

Entanglement and entangling power of the dynamics in light-harvesting complexes
journal, June 2010


Coherent Oscillations in the PC577 Cryptophyte Antenna Occur in the Excited Electronic State
journal, January 2014

  • McClure, Scott D.; Turner, Daniel B.; Arpin, Paul C.
  • The Journal of Physical Chemistry B, Vol. 118, Issue 5
  • DOI: 10.1021/jp411924c

Lineshape theory of pigment-protein complexes: How the finite relaxation time of nuclei influences the exciton relaxation-induced lifetime broadening
journal, July 2016

  • Dinh, Thanh-Chung; Renger, Thomas
  • The Journal of Chemical Physics, Vol. 145, Issue 3
  • DOI: 10.1063/1.4958322

How Static Disorder Mimics Decoherence in Anisotropy Pump–Probe Experiments on Purple-Bacteria Light Harvesting Complexes
journal, October 2016

  • Stross, Clement; Van der Kamp, Marc W.; Oliver, Thomas A. A.
  • The Journal of Physical Chemistry B, Vol. 120, Issue 44
  • DOI: 10.1021/acs.jpcb.6b09916

Coherent Two-Dimensional Optical Spectroscopy
journal, April 2008


L ONG -R ANGE R ESONANCE E NERGY T RANSFER IN M OLECULAR S YSTEMS
journal, October 2003


A Quantum Chemical Interpretation of Two-Dimensional Electronic Spectroscopy of Light-Harvesting Complexes
journal, May 2017

  • Segatta, Francesco; Cupellini, Lorenzo; Jurinovich, Sandro
  • Journal of the American Chemical Society, Vol. 139, Issue 22
  • DOI: 10.1021/jacs.7b02130

Efficient Simulation of Strong System-Environment Interactions
journal, July 2010


Limits of quantum speedup in photosynthetic light harvesting
journal, June 2010


Theory of the optical spectra of the bacteriochlorophyll a antenna protein trimer from Prosthecochloris aestuarii
journal, March 1992


Different Types of Vibrations Interacting with Electronic Excitations in Phycoerythrin 545 and Fenna–Matthews–Olson Antenna Systems
journal, September 2014

  • Aghtar, Mortaza; Strümpfer, Johan; Olbrich, Carsten
  • The Journal of Physical Chemistry Letters, Vol. 5, Issue 18
  • DOI: 10.1021/jz501351p

Electronic Energy Transfer in Condensed Phase Studied by a Polarizable QM/MM Model
journal, June 2009

  • Curutchet, Carles; Muñoz-Losa, Aurora; Monti, Susanna
  • Journal of Chemical Theory and Computation, Vol. 5, Issue 7
  • DOI: 10.1021/ct9001366

Unified treatment of quantum coherent and incoherent hopping dynamics in electronic energy transfer: Reduced hierarchy equation approach
journal, June 2009

  • Ishizaki, Akihito; Fleming, Graham R.
  • The Journal of Chemical Physics, Vol. 130, Issue 23
  • DOI: 10.1063/1.3155372

Dynamics of electronic dephasing in the Fenna–Matthews–Olson complex
journal, June 2010


Atomic Force Microscopy Studies of Native Photosynthetic Membranes
journal, May 2009

  • Sturgis, James N.; Tucker, Jaimey D.; Olsen, John D.
  • Biochemistry, Vol. 48, Issue 17
  • DOI: 10.1021/bi900045x

Excitation Energy Transfer in the Peridinin-Chlorophyll a -Protein Complex Modeled Using Configuration Interaction
journal, July 2014

  • Bricker, William P.; Lo, Cynthia S.
  • The Journal of Physical Chemistry B, Vol. 118, Issue 31
  • DOI: 10.1021/jp5017054

Toward Ab Initio Optical Spectroscopy of the Fenna–Matthews–Olson Complex
journal, November 2013

  • Cole, Daniel J.; Chin, Alex W.; Hine, Nicholas D. M.
  • The Journal of Physical Chemistry Letters, Vol. 4, Issue 24
  • DOI: 10.1021/jz402000c

Open quantum system parameters for light harvesting complexes from molecular dynamics
journal, January 2015

  • Wang, Xiaoqing; Ritschel, Gerhard; Wüster, Sebastian
  • Physical Chemistry Chemical Physics, Vol. 17, Issue 38
  • DOI: 10.1039/C5CP03891J

How Proteins Trigger Excitation Energy Transfer in the FMO Complex of Green Sulfur Bacteria
journal, October 2006


Three-Pulse Photon Echo Measurements on LH1 and LH2 Complexes of Rhodobacter sphaeroides :  A Nonlinear Spectroscopic Probe of Energy Transfer
journal, September 1997

  • Jimenez, Ralph; van Mourik, Frank; Yu, Jae Young
  • The Journal of Physical Chemistry B, Vol. 101, Issue 37
  • DOI: 10.1021/jp970299g

Intra- and Interband Transfers in the B800−B850 Antenna of Rhodospirillum m olischianum :  Redfield Theory Modeling of Polarized Pump−Probe Kinetics
journal, October 2003

  • Novoderezhkin, Vladimir; Wendling, Markus; van Grondelle, Rienk
  • The Journal of Physical Chemistry B, Vol. 107, Issue 41
  • DOI: 10.1021/jp035432l

QM/MM Methods for Biomolecular Systems
journal, January 2009

  • Senn, Hans Martin; Thiel, Walter
  • Angewandte Chemie International Edition, Vol. 48, Issue 7
  • DOI: 10.1002/anie.200802019

Nature of Disorder and Inter-Complex Energy Transfer in LH2 at Room Temperature:  A Three Pulse Photon Echo Peak Shift Study
journal, August 2002

  • Agarwal, Ritesh; Rizvi, Abbas H.; Prall, Bradley S.
  • The Journal of Physical Chemistry A, Vol. 106, Issue 33
  • DOI: 10.1021/jp014054m

Ultrafast Spectroscopic Investigation of Energy Transfer in Site-Directed Mutants of the Fenna–Matthews–Olson (FMO) Antenna Complex from Chlorobaculum tepidum
journal, April 2017

  • Magdaong, Nikki Cecil M.; Saer, Rafael G.; Niedzwiedzki, Dariusz M.
  • The Journal of Physical Chemistry B, Vol. 121, Issue 18
  • DOI: 10.1021/acs.jpcb.7b01270

Deciphering the Influence of Short-Range Electronic Couplings on Optical Properties of Molecular Dimers: Application to “Special Pairs” in Photosynthesis
journal, September 2009

  • Madjet, Mohamed El-Amine; Müh, Frank; Renger, Thomas
  • The Journal of Physical Chemistry B, Vol. 113, Issue 37
  • DOI: 10.1021/jp906009j

On the Theory of Relaxation Processes
journal, January 1957

  • Redfield, A. G.
  • IBM Journal of Research and Development, Vol. 1, Issue 1
  • DOI: 10.1147/rd.11.0019

Zwischenmolekulare Energiewanderung und Fluoreszenz
journal, January 1948


Estimation of Electronic Coupling for Photoinduced Charge Separation and Charge Recombination Using the Fragment Charge Difference Method
journal, February 2013

  • Voityuk, Alexander A.
  • The Journal of Physical Chemistry C, Vol. 117, Issue 6
  • DOI: 10.1021/jp311891h

Real-time and imaginary-time quantum hierarchal Fokker-Planck equations
journal, April 2015

  • Tanimura, Yoshitaka
  • The Journal of Chemical Physics, Vol. 142, Issue 14
  • DOI: 10.1063/1.4916647

Coherent quantum dynamics in donor–bridge–acceptor systems: beyond the hopping and super-exchange mechanisms
journal, October 2013


Broadband 2D Electronic Spectroscopy Reveals a Carotenoid Dark State in Purple Bacteria
journal, April 2013

  • Ostroumov, Evgeny E.; Mulvaney, Rachel M.; Cogdell, Richard J.
  • Science, Vol. 340, Issue 6128
  • DOI: 10.1126/science.1230106

Exciton Analysis in 2D Electronic Spectroscopy
journal, June 2005

  • Cho, Minhaeng; Vaswani, Harsha M.; Brixner, Tobias
  • The Journal of Physical Chemistry B, Vol. 109, Issue 21
  • DOI: 10.1021/jp050788d

A coherent modified Redfield theory for excitation energy transfer in molecular aggregates
journal, February 2015


Long-range correction for density functional theory: Long-range correction for DFT
journal, July 2014

  • Tsuneda, Takao; Hirao, Kimihiko
  • Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 4, Issue 4
  • DOI: 10.1002/wcms.1178

Modeling Electronic-Nuclear Interactions for Excitation Energy Transfer Processes in Light-Harvesting Complexes
journal, August 2016


Excitation energy transfer in condensed media
journal, February 2001

  • Hsu, Chao-Ping; Fleming, Graham R.; Head-Gordon, Martin
  • The Journal of Chemical Physics, Vol. 114, Issue 7
  • DOI: 10.1063/1.1338531

Calculation of pigment transition energies in the FMO protein: From simplicity to complexity and back
journal, October 2007

  • Adolphs, Julian; Müh, Frank; Madjet, Mohamed El-Amine
  • Photosynthesis Research, Vol. 95, Issue 2-3
  • DOI: 10.1007/s11120-007-9248-z

Multichromophoric Förster Resonance Energy Transfer
journal, May 2004


Fluorescence and photobleaching dynamics of single light-harvesting complexes
journal, September 1997

  • Bopp, M. A.; Jia, Y.; Li, L.
  • Proceedings of the National Academy of Sciences, Vol. 94, Issue 20
  • DOI: 10.1073/pnas.94.20.10630

Enhancing light-harvesting power with coherent vibrational interactions: A quantum heat engine picture
journal, October 2015

  • Killoran, N.; Huelga, S. F.; Plenio, M. B.
  • The Journal of Chemical Physics, Vol. 143, Issue 15
  • DOI: 10.1063/1.4932307

Polarizable continuum model: Polarizable continuum model
journal, January 2012

  • Mennucci, Benedetta
  • Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 2, Issue 3
  • DOI: 10.1002/wcms.1086

Excitation transfer pathways in excitonic aggregates revealed by the stochastic Schrödinger equation
journal, February 2014

  • Abramavicius, Vytautas; Abramavicius, Darius
  • The Journal of Chemical Physics, Vol. 140, Issue 6
  • DOI: 10.1063/1.4863968

Two-dimensional spectroscopy of electronic couplings in photosynthesis
journal, March 2005

  • Brixner, Tobias; Stenger, Jens; Vaswani, Harsha M.
  • Nature, Vol. 434, Issue 7033
  • DOI: 10.1038/nature03429

Long-lived quantum coherence in photosynthetic complexes at physiological temperature
journal, July 2010

  • Panitchayangkoon, G.; Hayes, D.; Fransted, K. A.
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 29
  • DOI: 10.1073/pnas.1005484107

The Role of the S 1 State of Carotenoids in Photosynthetic Energy Transfer:  The Light-Harvesting Complex II of Purple Bacteria
journal, November 2001

  • Hsu, Chao-Ping; Walla, Peter J.; Head-Gordon, Martin
  • The Journal of Physical Chemistry B, Vol. 105, Issue 44
  • DOI: 10.1021/jp0119835

Why Quantum Coherence Is Not Important in the Fenna–Matthews–Olsen Complex
journal, June 2015

  • Wilkins, David M.; Dattani, Nikesh S.
  • Journal of Chemical Theory and Computation, Vol. 11, Issue 7
  • DOI: 10.1021/ct501066k

Single molecule spectroscopy of disordered circular aggregates: A perturbation analysis
journal, June 2001

  • Dempster, Sara E.; Jang, Seogjoo; Silbey, Robert J.
  • The Journal of Chemical Physics, Vol. 114, Issue 22
  • DOI: 10.1063/1.1369159

An efficient method to calculate excitation energy transfer in light-harvesting systems: application to the Fenna–Matthews–Olson complex
journal, November 2011


Multiple Exciton Coherence Sizes in Photosynthetic Antenna Complexes viewed by Pump−Probe Spectroscopy
journal, September 1997

  • Meier, T.; Chernyak, V.; Mukamel, S.
  • The Journal of Physical Chemistry B, Vol. 101, Issue 37
  • DOI: 10.1021/jp970045v

Influence of Phospholipid Composition on Self-Assembly and Energy-Transfer Efficiency in Networks of Light-Harvesting 2 Complexes
journal, August 2013

  • Sumino, Ayumi; Dewa, Takehisa; Noji, Tomoyasu
  • The Journal of Physical Chemistry B, Vol. 117, Issue 36
  • DOI: 10.1021/jp4047819

Theory of Rapid Excitation-Energy Transfer from B800 to Optically-Forbidden Exciton States of B850 in the Antenna System LH2 of Photosynthetic Purple Bacteria
journal, July 1999

  • Mukai, Koichiro; Abe, Shuji; Sumi, Hitoshi
  • The Journal of Physical Chemistry B, Vol. 103, Issue 29
  • DOI: 10.1021/jp984469g

Kinetics of Excitation Migration and Trapping in the Photosynthetic Unit of Purple Bacteria
journal, August 2001

  • Ritz, Thorsten; Park, Sanghyun; Schulten, Klaus
  • The Journal of Physical Chemistry B, Vol. 105, Issue 34
  • DOI: 10.1021/jp011032r

Theory and Simulation of the Environmental Effects on FMO Electronic Transitions
journal, June 2011

  • Olbrich, Carsten; Strümpfer, Johan; Schulten, Klaus
  • The Journal of Physical Chemistry Letters, Vol. 2, Issue 14
  • DOI: 10.1021/jz2007676

Origin of long-lived oscillations in 2D-spectra of a quantum vibronic model: Electronic versus vibrational coherence
journal, December 2013

  • Plenio, M. B.; Almeida, J.; Huelga, S. F.
  • The Journal of Chemical Physics, Vol. 139, Issue 23
  • DOI: 10.1063/1.4846275

Chromatic Adaptation of Photosynthetic Membranes
journal, July 2005


Quantum-Coherent Electronic Energy Transfer: Did Nature Think of It First?
journal, November 2009

  • Scholes, Gregory D.
  • The Journal of Physical Chemistry Letters, Vol. 1, Issue 1
  • DOI: 10.1021/jz900062f

Excitons in a photosynthetic light-harvesting system: A combined molecular dynamics, quantum chemistry, and polaron model study
journal, March 2002


Consistent treatment of coherent and incoherent energy transfer dynamics using a variational master equation
journal, September 2011

  • McCutcheon, Dara P. S.; Nazir, Ahsan
  • The Journal of Chemical Physics, Vol. 135, Issue 11
  • DOI: 10.1063/1.3636081

Exciton dynamics in ring-like photosynthetic light-harvesting complexes: a hopping model
journal, January 2004

  • Abramavicius, Darius; Valkunas, Leonas; van Grondelle, Rienk
  • Physical Chemistry Chemical Physics, Vol. 6, Issue 12
  • DOI: 10.1039/b315252a

Role of Quantum Coherence and Environmental Fluctuations in Chromophoric Energy Transport
journal, July 2009

  • Rebentrost, Patrick; Mohseni, Masoud; Aspuru-Guzik, Alán
  • The Journal of Physical Chemistry B, Vol. 113, Issue 29
  • DOI: 10.1021/jp901724d

Inhomogeneous dephasing masks coherence lifetimes in ensemble measurements
journal, April 2012

  • Pelzer, Kenley M.; Griffin, Graham B.; Gray, Stephen K.
  • The Journal of Chemical Physics, Vol. 136, Issue 16
  • DOI: 10.1063/1.4704591

Energy transfer from Förster–Dexter theory to quantum coherent light-harvesting
journal, January 2011

  • Olaya-Castro, Alexandra; Scholes, Gregory D.
  • International Reviews in Physical Chemistry, Vol. 30, Issue 1
  • DOI: 10.1080/0144235X.2010.537060

Dynamics of Light Harvesting in Photosynthesis
journal, May 2009


Characterizing the Locality of Diabatic States for Electronic Excitation Transfer By Decomposing the Diabatic Coupling
journal, October 2010

  • Vura-Weis, Josh; Newton, Marshall D.; Wasielewski, Michael R.
  • The Journal of Physical Chemistry C, Vol. 114, Issue 48
  • DOI: 10.1021/jp104783r

Atomistic Modeling of Two-Dimensional Electronic Spectra and Excited-State Dynamics for a Light Harvesting 2 Complex
journal, January 2015

  • van der Vegte, C. P.; Prajapati, J. D.; Kleinekathöfer, U.
  • The Journal of Physical Chemistry B, Vol. 119, Issue 4
  • DOI: 10.1021/jp509247p

Photoinduced Intra- and Intermolecular Energy Transfer in Chlorophyll a Dimer
journal, May 2017

  • Zheng, Fulu; Fernandez-Alberti, Sebastian; Tretiak, Sergei
  • The Journal of Physical Chemistry B, Vol. 121, Issue 21
  • DOI: 10.1021/acs.jpcb.7b02021

How Solvent Controls Electronic Energy Transfer and Light Harvesting:  Toward a Quantum-Mechanical Description of Reaction Field and Screening Effects
journal, November 2007

  • Curutchet, Carles; Scholes, Gregory D.; Mennucci, Benedetta
  • The Journal of Physical Chemistry B, Vol. 111, Issue 46
  • DOI: 10.1021/jp075411h

Dynamic coherence in excitonic molecular complexes under various excitation conditions
journal, August 2014


Optimal fold symmetry of LH2 rings on a photosynthetic membrane
journal, May 2013

  • Cleary, L.; Chen, H.; Chuang, C.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 21
  • DOI: 10.1073/pnas.1218270110

Electronic coherence lineshapes reveal hidden excitonic correlations in photosynthetic light harvesting
journal, March 2012

  • Wong, Cathy Y.; Alvey, Richard M.; Turner, Daniel B.
  • Nature Chemistry, Vol. 4, Issue 5
  • DOI: 10.1038/nchem.1302

Vibronic Enhancement of Algae Light Harvesting
journal, December 2016


Ultrafast Energy Transfer in FMO Trimers from the Green Bacterium Chlorobium tepidum
journal, September 1994


Equilibrium excited state and emission spectra of molecular aggregates from the hierarchical equations of motion approach
journal, January 2013

  • Jing, Yuanyuan; Chen, Liping; Bai, Shuming
  • The Journal of Chemical Physics, Vol. 138, Issue 4
  • DOI: 10.1063/1.4775843

The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria
journal, May 2009


Exciton Simulations of Optical Spectra of the FMO Complex from the Green Sulfur Bacterium Chlorobium tepidum at 6 K
journal, November 1998

  • Vulto, Simone I. E.; de Baat, Michiel A.; Louwe, Robert J. W.
  • The Journal of Physical Chemistry B, Vol. 102, Issue 47
  • DOI: 10.1021/jp982095l

Excited state energy fluctuations in the Fenna–Matthews–Olson complex from molecular dynamics simulations with interpolated chromophore potentials
journal, January 2018

  • Kim, Chang Woo; Choi, Bongsik; Rhee, Young Min
  • Physical Chemistry Chemical Physics, Vol. 20, Issue 5
  • DOI: 10.1039/C7CP06303B

Semiclassical Path Integral Dynamics: Photosynthetic Energy Transfer with Realistic Environment Interactions
journal, May 2016


Non-classicality of the molecular vibrations assisting exciton energy transfer at room temperature
journal, January 2014

  • O’Reilly, Edward J.; Olaya-Castro, Alexandra
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms4012

Waiting Time Dynamics in Two-Dimensional Infrared Spectroscopy
journal, September 2009

  • Jansen, Thomas l. C.; Knoester, Jasper
  • Accounts of Chemical Research, Vol. 42, Issue 9
  • DOI: 10.1021/ar900025a

The FMO Complex in a Glycerol–Water Mixture
journal, June 2013

  • Aghtar, Mortaza; Strümpfer, Johan; Olbrich, Carsten
  • The Journal of Physical Chemistry B, Vol. 117, Issue 24
  • DOI: 10.1021/jp311380k

Light harvesting complex II B850 excitation dynamics
journal, December 2009

  • Strümpfer, Johan; Schulten, Klaus
  • The Journal of Chemical Physics, Vol. 131, Issue 22
  • DOI: 10.1063/1.3271348

Characterization of the Short-Range Couplings in Excitation Energy Transfer
journal, January 2008

  • Hsu, Chao-Ping; You, Zhi-Qiang; Chen, Hung-Cheng
  • The Journal of Physical Chemistry C, Vol. 112, Issue 4
  • DOI: 10.1021/jp076512i