A Transcriptomic Analysis of Xylan Mutants Does Not Support the Existence of a Secondary Cell Wall Integrity System in Arabidopsis
Abstract
Yeast have long been known to possess a cell wall integrity (CWI) system, and recently an analogous systemhas been described for the primary walls of plants (PCWI) that leads to changes in plant growth and cell wall composition. A similar system has been proposed to exist for secondary cell walls (SCWI). However, there is little data to support this. Here, we analyzed the stem transcriptome of a set of cell wall biosynthetic mutants in order to investigate whether cell wall damage, in this case caused by aberrant xylan synthesis, activates a signaling cascade or changes in cell wall synthesis gene expression. Our data revealed remarkably few changes to the transcriptome. We hypothesize that this is because cells undergoing secondary cell wall thickening have entered a committed programme leading to cell death, and therefore a SCWI system would have limited impact. The absence of transcriptomic responses to secondary cell wall alterations may facilitate engineering of the secondary cell wall of plants.
- Authors:
-
- Univ. of Cambridge (United Kingdom). Dept. of Biohemistry
- Univ. of Cambridge (United Kingdom). Dept. of Biohemistry; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1465453
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Plant Science
- Additional Journal Information:
- Journal Volume: 9; Journal ID: ISSN 1664-462X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Faria-Blanc, Nuno, Mortimer, Jenny C., and Dupree, Paul. A Transcriptomic Analysis of Xylan Mutants Does Not Support the Existence of a Secondary Cell Wall Integrity System in Arabidopsis. United States: N. p., 2018.
Web. doi:10.3389/fpls.2018.00384.
Faria-Blanc, Nuno, Mortimer, Jenny C., & Dupree, Paul. A Transcriptomic Analysis of Xylan Mutants Does Not Support the Existence of a Secondary Cell Wall Integrity System in Arabidopsis. United States. https://doi.org/10.3389/fpls.2018.00384
Faria-Blanc, Nuno, Mortimer, Jenny C., and Dupree, Paul. Tue .
"A Transcriptomic Analysis of Xylan Mutants Does Not Support the Existence of a Secondary Cell Wall Integrity System in Arabidopsis". United States. https://doi.org/10.3389/fpls.2018.00384. https://www.osti.gov/servlets/purl/1465453.
@article{osti_1465453,
title = {A Transcriptomic Analysis of Xylan Mutants Does Not Support the Existence of a Secondary Cell Wall Integrity System in Arabidopsis},
author = {Faria-Blanc, Nuno and Mortimer, Jenny C. and Dupree, Paul},
abstractNote = {Yeast have long been known to possess a cell wall integrity (CWI) system, and recently an analogous systemhas been described for the primary walls of plants (PCWI) that leads to changes in plant growth and cell wall composition. A similar system has been proposed to exist for secondary cell walls (SCWI). However, there is little data to support this. Here, we analyzed the stem transcriptome of a set of cell wall biosynthetic mutants in order to investigate whether cell wall damage, in this case caused by aberrant xylan synthesis, activates a signaling cascade or changes in cell wall synthesis gene expression. Our data revealed remarkably few changes to the transcriptome. We hypothesize that this is because cells undergoing secondary cell wall thickening have entered a committed programme leading to cell death, and therefore a SCWI system would have limited impact. The absence of transcriptomic responses to secondary cell wall alterations may facilitate engineering of the secondary cell wall of plants.},
doi = {10.3389/fpls.2018.00384},
journal = {Frontiers in Plant Science},
number = ,
volume = 9,
place = {United States},
year = {Tue Mar 27 00:00:00 EDT 2018},
month = {Tue Mar 27 00:00:00 EDT 2018}
}
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Cell wall integrity signaling in plants: “To grow or not to grow that's the question”
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The Role of the Plant-Specific ALTERED XYLOGLUCAN9 Protein in Arabidopsis Cell Wall Polysaccharide O- Acetylation
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Impairment of Cellulose Synthases Required for Arabidopsis Secondary Cell Wall Formation Enhances Disease Resistance
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A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis
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Neighboring Parenchyma Cells Contribute to Arabidopsis Xylem Lignification, while Lignification of Interfascicular Fibers Is Cell Autonomous
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Two Arabidopsis proteins synthesize acetylated xylan in vitro
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Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis
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Engineering of plants with improved properties as biofuels feedstocks by vessel-specific complementation of xylan biosynthesis mutants
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A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis
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- BMC Plant Biology, Vol. 14, Issue 1
Powerful regulatory systems and post-transcriptional gene silencing resist increases in cellulose content in cell walls of barley
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- BMC Plant Biology, Vol. 15, Issue 1
Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants
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- Vargas, Lívia; Cesarino, Igor; Vanholme, Ruben
- Biotechnology for Biofuels, Vol. 9, Issue 1
Growth Stage-Based Phenotypic Analysis of Arabidopsis: A Model for High Throughput Functional Genomics in Plants
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- The Plant Cell, Vol. 13, Issue 7
Plant cell wall integrity maintenance as an essential component of biotic stress response mechanisms
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- Hamann, Thorsten
- Frontiers in Plant Science, Vol. 3
The role of the secondary cell wall in plant resistance to pathogens
journal, August 2014
- Miedes, Eva; Vanholme, Ruben; Boerjan, Wout
- Frontiers in Plant Science, Vol. 5
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A systems genetics analysis in Eucalyptus reveals coordination of metabolic pathways associated with xylan modification in wood‐forming tissues
journal, April 2019
- Wierzbicki, Martin P.; Christie, Nanette; Pinard, Desré
- New Phytologist, Vol. 223, Issue 4
A wall with integrity: surveillance and maintenance of the plant cell wall under stress
journal, September 2019
- Rui, Yue; Dinneny, José R.
- New Phytologist, Vol. 225, Issue 4
Engineering Non-cellulosic Polysaccharides of Wood for the Biorefinery
journal, October 2018
- Donev, Evgeniy; Gandla, Madhavi Latha; Jönsson, Leif J.
- Frontiers in Plant Science, Vol. 9
Poplar carbohydrate‐active enzymes: whole‐genome annotation and functional analyses based on RNA expression data
journal, July 2019
- Kumar, Vikash; Hainaut, Matthieu; Delhomme, Nicolas
- The Plant Journal, Vol. 99, Issue 4
Exploring the Role of Cell Wall-Related Genes and Polysaccharides during Plant Development
journal, May 2018
- Tucker, Matthew; Lou, Haoyu; Aubert, Matthew
- Plants, Vol. 7, Issue 2
New steps in mucilage biosynthesis revealed by analysis of the transcriptome of the UDP-rhamnose/UDP-galactose transporter 2 mutant
journal, August 2019
- Parra-Rojas, Juan Pablo; Largo-Gosens, Asier; Carrasco, Tomás
- Journal of Experimental Botany, Vol. 70, Issue 19
Xylan in the Middle: Understanding Xylan Biosynthesis and Its Metabolic Dependencies Toward Improving Wood Fiber for Industrial Processing
journal, February 2019
- Wierzbicki, Martin P.; Maloney, Victoria; Mizrachi, Eshchar
- Frontiers in Plant Science, Vol. 10
Plant Cell Walls Tackling Climate Change: Biotechnological Strategies to Improve Crop Adaptations and Photosynthesis in Response to Global Warming
journal, February 2020
- Ezquer, Ignacio; Salameh, Ilige; Colombo, Lucia
- Plants, Vol. 9, Issue 2