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Title: Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA

Abstract

Heterotrophic respiration (Rh), microbial processing of soil organic matter to carbon dioxide (CO2), is a major, yet highly uncertain, carbon (C) flux from terrestrial systems to the atmosphere. Temperature sensitivity of Rh is often represented with a simple Q10 function in ecosystem models and earth system models (ESMs), sometimes accompanied by an empirical soil moisture modifier. More explicit representation of the effects of soil moisture, substrate supply, and their interactions with temperature has been proposed as a way to disentangle the confounding factors of apparent temperature sensitivity of Rh and improve the performance of ecosystem models and ESMs. The objective of this work was to insert into an ecosystem model a more mechanistic, but still parsimonious, model of environmental factors controlling Rh and evaluate the model performance in terms of soil and ecosystem respiration. The Dual Arrhenius and Michaelis-Menten (DAMM) model simulates Rh using Michaelis-Menten, Arrhenius, and diffusion functions. Soil moisture affects Rh and its apparent temperature sensitivity in DAMM by regulating the diffusion of oxygen, soluble C substrates, and extracellular enzymes to the enzymatic reaction site. Here, we merged the DAMM soil flux model with a parsimonious ecosystem flux model, FöBAAR (Forest Biomass, Assimilation, Allocation and Respiration). We usedmore » high-frequency soil flux data from automated soil chambers and landscape-scale ecosystem fluxes from eddy covariance towers at two AmeriFlux sites (Harvard Forest, MA and Howland Forest, ME) in the northeastern USA to estimate parameters, validate the merged model, and to quantify the uncertainties in a multiple constraints approach. The optimized DAMM-FöBAAR model better captured the seasonal and inter-annual dynamics of soil respiration (Soil R) compared to the FöBAAR-only model for the Harvard Forest, where higher frequency and duration of drying events significantly regulate substrate supply to heterotrophs. However, DAMM-FöBAAR showed improvement over FöBAAR-only at the boreal transition Howland Forest only in unusually dry years. The frequency of synoptic-scale dry periods is lower at Howland, resulting in only brief water limitation of Rh in some years. At both sites, the declining trend of soil R during drying events was captured by the DAMM-FöBAAR model; however, model performance was also contingent on site conditions, climate, and the temporal scale of interest. While the DAMM functions require a few more parameters than a simple Q10 function, we have demonstrated that they can be included in an ecosystem model and reduce the model-data mismatch. Moreover, the mechanistic structure of the soil moisture effects using DAMM functions should be more generalizable than the wide variety of empirical functions that are commonly used, and these DAMM functions could be readily incorporated into other ecosystem models and ESMs.« less

Authors:
ORCiD logo [1];  [2];  [3];  [4];  [5];  [6];  [7]
  1. Univ. of Maryland Center for Environmental Science, Frostburg, MD (United States). Appalachian Lab.; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Climate Change Science Inst., Environmental Sciences Division
  2. Univ. of Maryland Center for Environmental Science, Frostburg, MD (United States). Appalachian Lab.
  3. Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Joint Global Change Research Inst.
  4. Woods Hole Research Center, Falmouth, MA (United States)
  5. Harvard Univ., Cambridge, MA (United States). Department of Organismic and Evolutionary Biology; Northern Arizona Univ., Flagstaff, AZ (United States). School of Informatics, Computing, and Cyber Systems/Center for Ecosystem Science and Society
  6. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  7. USDA Forest Service, Durham, NH (United States). Northern Research Station
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1462870
Alternate Identifier(s):
OSTI ID: 1455296; OSTI ID: 1462972; OSTI ID: 1702579
Report Number(s):
PNNL-SA-133991
Journal ID: ISSN 0168-1923
Grant/Contract Number:  
AC05-00OR22725; AC02-05CH11231; SC0006741; 2014-67003-22073; AC05-76RL01830; DEB-1237491
Resource Type:
Accepted Manuscript
Journal Name:
Agricultural and Forest Meteorology
Additional Journal Information:
Journal Volume: 252; Journal Issue: C; Journal ID: ISSN 0168-1923
Publisher:
Elsevier
Country of Publication:
United States
Language:
English
Subject:
54 ENVIRONMENTAL SCIENCES; Soil respiration; Soil carbon; Climate change; Q10; DAMM; FöBAAR

Citation Formats

Sihi, Debjani, Davidson, Eric A., Chen, Min, Savage, Kathleen E., Richardson, Andrew D., Keenan, Trevor F., and Hollinger, David Y.. Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA. United States: N. p., 2018. Web. https://doi.org/10.1016/j.agrformet.2018.01.026.
Sihi, Debjani, Davidson, Eric A., Chen, Min, Savage, Kathleen E., Richardson, Andrew D., Keenan, Trevor F., & Hollinger, David Y.. Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA. United States. https://doi.org/10.1016/j.agrformet.2018.01.026
Sihi, Debjani, Davidson, Eric A., Chen, Min, Savage, Kathleen E., Richardson, Andrew D., Keenan, Trevor F., and Hollinger, David Y.. Mon . "Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA". United States. https://doi.org/10.1016/j.agrformet.2018.01.026. https://www.osti.gov/servlets/purl/1462870.
@article{osti_1462870,
title = {Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA},
author = {Sihi, Debjani and Davidson, Eric A. and Chen, Min and Savage, Kathleen E. and Richardson, Andrew D. and Keenan, Trevor F. and Hollinger, David Y.},
abstractNote = {Heterotrophic respiration (Rh), microbial processing of soil organic matter to carbon dioxide (CO2), is a major, yet highly uncertain, carbon (C) flux from terrestrial systems to the atmosphere. Temperature sensitivity of Rh is often represented with a simple Q10 function in ecosystem models and earth system models (ESMs), sometimes accompanied by an empirical soil moisture modifier. More explicit representation of the effects of soil moisture, substrate supply, and their interactions with temperature has been proposed as a way to disentangle the confounding factors of apparent temperature sensitivity of Rh and improve the performance of ecosystem models and ESMs. The objective of this work was to insert into an ecosystem model a more mechanistic, but still parsimonious, model of environmental factors controlling Rh and evaluate the model performance in terms of soil and ecosystem respiration. The Dual Arrhenius and Michaelis-Menten (DAMM) model simulates Rh using Michaelis-Menten, Arrhenius, and diffusion functions. Soil moisture affects Rh and its apparent temperature sensitivity in DAMM by regulating the diffusion of oxygen, soluble C substrates, and extracellular enzymes to the enzymatic reaction site. Here, we merged the DAMM soil flux model with a parsimonious ecosystem flux model, FöBAAR (Forest Biomass, Assimilation, Allocation and Respiration). We used high-frequency soil flux data from automated soil chambers and landscape-scale ecosystem fluxes from eddy covariance towers at two AmeriFlux sites (Harvard Forest, MA and Howland Forest, ME) in the northeastern USA to estimate parameters, validate the merged model, and to quantify the uncertainties in a multiple constraints approach. The optimized DAMM-FöBAAR model better captured the seasonal and inter-annual dynamics of soil respiration (Soil R) compared to the FöBAAR-only model for the Harvard Forest, where higher frequency and duration of drying events significantly regulate substrate supply to heterotrophs. However, DAMM-FöBAAR showed improvement over FöBAAR-only at the boreal transition Howland Forest only in unusually dry years. The frequency of synoptic-scale dry periods is lower at Howland, resulting in only brief water limitation of Rh in some years. At both sites, the declining trend of soil R during drying events was captured by the DAMM-FöBAAR model; however, model performance was also contingent on site conditions, climate, and the temporal scale of interest. While the DAMM functions require a few more parameters than a simple Q10 function, we have demonstrated that they can be included in an ecosystem model and reduce the model-data mismatch. Moreover, the mechanistic structure of the soil moisture effects using DAMM functions should be more generalizable than the wide variety of empirical functions that are commonly used, and these DAMM functions could be readily incorporated into other ecosystem models and ESMs.},
doi = {10.1016/j.agrformet.2018.01.026},
journal = {Agricultural and Forest Meteorology},
number = C,
volume = 252,
place = {United States},
year = {2018},
month = {2}
}

Journal Article:

Citation Metrics:
Cited by: 17 works
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Figures / Tables:

Fig.1 Fig.1: Integrating DAMM ($\underline{D}$ual $\underline{A}$rrhenius and $\underline{M}$ichaelis-$\underline{M}$enten, Davidson et al., 2012) soil flux model into FöBAAR ($\underline{F}$orest $\underline{B}$iomass, $\underline{A}$ssimilation, $\underline{A}$llocation and $\underline{R}$espiration, Keenan et al., 2012) ecosystem flux model. Dashed arrows represent CO2 fluxes from litter and three SOM Pools (fast, passive, and slow pools), where we replaced FöBAAR’s algorithmsmore » for Rh (Eq. 1) with those of DAMM (Eq. 3).« less

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