Bioprinting microbial communities to examine interspecies interactions in time and space

doi:10.1088/2057-1976/aad544

Title: Bioprinting microbial communities to examine interspecies interactions in time and space

Authors:

; Chacón, Jeremy; Segrè, Daniel; Marx, Christopher J.; Cady, Nathaniel C.; Harcombe, William R.

Publication Date:: 2018-08-02

Research Org.:: Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

Sponsoring Org.:: USDOE National Nuclear Security Administration (NNSA)

OSTI Identifier:: 1462578

Alternate Identifier(s):: OSTI ID: 1600880

Report Number(s):: [LLNL-JRNL-754585]
[Journal ID: ISSN 2057-1976]

Grant/Contract Number:: [AC52-07NA27344; DC0006731]

Resource Type:: Published Article

Journal Name:: Biomedical Physics & Engineering Express

Additional Journal Information:: [Journal Name: Biomedical Physics & Engineering Express Journal Volume: 4 Journal Issue: 5]; Journal ID: ISSN 2057-1976

Publisher:: IOP Publishing

Country of Publication:: Country unknown/Code not available

Language:: English

Subject:: Environmental sciences; Biological and medical sciences; Engineering

Citation Formats


                    Hynes, William F., Chacón, Jeremy, Segrè, Daniel, Marx, Christopher J., Cady, Nathaniel C., and Harcombe, William R. Bioprinting microbial communities to examine interspecies interactions in time and space.  Country unknown/Code not available: N. p., 2018. 
        Web.  doi:10.1088/2057-1976/aad544.

Copy to clipboard


                    Hynes, William F., Chacón, Jeremy, Segrè, Daniel, Marx, Christopher J., Cady, Nathaniel C., & Harcombe, William R. Bioprinting microbial communities to examine interspecies interactions in time and space.  Country unknown/Code not available.  doi:10.1088/2057-1976/aad544.

Copy to clipboard


                    Hynes, William F., Chacón, Jeremy, Segrè, Daniel, Marx, Christopher J., Cady, Nathaniel C., and Harcombe, William R. Thu .  
        "Bioprinting microbial communities to examine interspecies interactions in time and space".  Country unknown/Code not available.  doi:10.1088/2057-1976/aad544.

Copy to clipboard


                    
@article{osti_1462578,

  title        = {Bioprinting microbial communities to examine interspecies interactions in time and space},

  author       = {Hynes, William F. and Chacón, Jeremy and Segrè, Daniel and Marx, Christopher J. and Cady, Nathaniel C. and Harcombe, William R.},

  abstractNote = {},

  doi          = {10.1088/2057-1976/aad544},

  journal      = {Biomedical Physics & Engineering Express},

  number       = [5],

  volume       = [4],

  place        = {Country unknown/Code not available},

  year         = {2018},

  month        = {8}

}

Copy to clipboard

Journal Article:

Free Publicly Available Full Text

Publisher's Version of Record
DOI: 10.1088/2057-1976/aad544

Other availability

Search WorldCat to find libraries that may hold this journal

Save / Share:

Export Metadata

Save to My Library

Works referenced in this record:

A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011
journal, January 2011

Orth, Jeffrey D.; Conrad, Tom M.; Na, Jessica
Molecular Systems Biology, Vol. 7, Issue 1
DOI: 10.1038/msb.2011.65

Controlling laser-induced jet formation for bioprinting mesenchymal stem cells with high viability and high resolution
journal, September 2014

Ali, Muhammad; Pages, Emeline; Ducom, Alexandre
Biofabrication, Vol. 6, Issue 4
DOI: 10.1088/1758-5082/6/4/045001

Generation of mesoscopic patterns of viable Escherichia coli by ambient laser transfer
journal, January 2002

Ringeisen, B. R.; Chrisey, D. B.; Piqué, A.
Biomaterials, Vol. 23, Issue 1
DOI: 10.1016/S0142-9612(01)00091-6

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
journal, January 2009

Raghunathan, Anu; Reed, Jennifer; Shin, Sookil
BMC Systems Biology, Vol. 3, Issue 1
DOI: 10.1186/1752-0509-3-38

Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium
journal, October 2007

Brenner, K.; Karig, D. K.; Weiss, R.
Proceedings of the National Academy of Sciences, Vol. 104, Issue 44
DOI: 10.1073/pnas.0704256104

Defined spatial structure stabilizes a synthetic multispecies bacterial community
journal, November 2008

Kim, H. J.; Boedicker, J. Q.; Choi, J. W.
Proceedings of the National Academy of Sciences, Vol. 105, Issue 47
DOI: 10.1073/pnas.0807935105

Bacterial Small-Molecule Signaling Pathways
journal, February 2006

Camilli, Andrew; Bassler, Bonnie L.
Science, Vol. 311, Issue 5764, p. 1113-1116
DOI: 10.1126/science.1121357

A hydrogel bioink toolkit for mimicking native tissue biochemical and mechanical properties in bioprinted tissue constructs
journal, October 2015

Skardal, Aleksander; Devarasetty, Mahesh; Kang, Hyun-Wook
Acta Biomaterialia, Vol. 25
DOI: 10.1016/j.actbio.2015.07.030

What is microbial community ecology?
journal, August 2009

Konopka, Allan
The ISME Journal, Vol. 3, Issue 11
DOI: 10.1038/ismej.2009.88

Thermal Inkjet Printing in Tissue Engineering and Regenerative Medicine
journal, May 2012

Cui, Xiaofeng; Boland, Thomas; D. D'Lima, Darryl
Recent Patents on Drug Delivery & Formulation, Vol. 6, Issue 2
DOI: 10.2174/187221112800672949

Metabolic modeling of a mutualistic microbial community
journal, January 2007

Stolyar, Sergey; Van Dien, Steve; Hillesland, Kristina Linnea
Molecular Systems Biology, Vol. 3, Issue 1
DOI: 10.1038/msb4100131

Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics
journal, May 2014

Harcombe, William R.; Riehl, William J.; Dukovski, Ilija
Cell Reports, Vol. 7, Issue 4
DOI: 10.1016/j.celrep.2014.03.070

Printing Multistrain Bacterial Patterns with a Piezoelectric Inkjet Printer
journal, July 2007

Merrin, Jack; Leibler, Stanislas; Chuang, John S.
PLoS ONE, Vol. 2, Issue 7
DOI: 10.1371/journal.pone.0000663

The spatial and metabolic basis of colony size variation
journal, January 2018

Chacón, Jeremy M.; Möbius, Wolfram; Harcombe, William R.
The ISME Journal, Vol. 12, Issue 3
DOI: 10.1038/s41396-017-0038-0

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants the Keio collection
journal, February 2006

Baba, Tomoya; Ara, Takeshi; Hasegawa, Miki
Molecular Systems Biology, Vol. 2, Article No. 2006.0008
DOI: 10.1038/msb4100050

Local dispersal promotes biodiversity in a real-life game of rock–paper–scissors
journal, July 2002

Kerr, Benjamin; Riley, Margaret A.; Feldman, Marcus W.
Nature, Vol. 418, Issue 6894
DOI: 10.1038/nature00823

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.
journal, January 1994

Varma, A.; Palsson, B. O.
Applied and Environmental Microbiology, Vol. 60, Issue 10
DOI: 10.1128/AEM.60.10.3724-3731.1994

Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens
journal, April 2013

Delaney, Nigel F.; Kaczmarek, Maria E.; Ward, Lewis M.
PLoS ONE, Vol. 8, Issue 4
DOI: 10.1371/journal.pone.0062957

Engineering microbial consortia: a new frontier in synthetic biology
journal, September 2008

Brenner, Katie; You, Lingchong; Arnold, Frances H.
Trends in Biotechnology, Vol. 26, Issue 9, p. 483-489
DOI: 10.1016/j.tibtech.2008.05.004

Biomimicry of quorum sensing using bacterial lifecycle model
journal, May 2013

Niu, Ben; Wang, Hong; Duan, Qiqi
BMC Bioinformatics, Vol. 14, Issue S8
DOI: 10.1186/1471-2105-14-S8-S8

Calibration and analysis of genome-based models for microbial ecology
journal, October 2015

Louca, Stilianos; Doebeli, Michael
eLife, Vol. 4
DOI: 10.7554/eLife.08208

COOPERATIVE ORGANIZATION OF BACTERIAL COLONIES: From Genotype to Morphotype
journal, October 1998

Ben-Jacob, Eshel; Cohen, Inon; Gutnick, David L.
Annual Review of Microbiology, Vol. 52, Issue 1
DOI: 10.1146/annurev.micro.52.1.779

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities
journal, January 2011

Tzamali, Eleftheria; Poirazi, Panayiota; Tollis, Ioannis G.
BMC Systems Biology, Vol. 5, Issue 1
DOI: 10.1186/1752-0509-5-167

Patterning and transferring hydrogel-encapsulated bacterial cells for quantitative analysis of synthetically engineered genetic circuits
journal, January 2012

Choi, Woon Sun; Kim, Minseok; Park, Seongyong
Biomaterials, Vol. 33, Issue 2
DOI: 10.1016/j.biomaterials.2011.09.069

A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database
journal, January 2014

Weaver, Daniel S.; Keseler, Ingrid M.; Mackie, Amanda
BMC Systems Biology, Vol. 8, Issue 1
DOI: 10.1186/1752-0509-8-79

Engineering ecosystems and synthetic ecologies
journal, January 2012

Mee, Michael T.; Wang, Harris H.
Molecular BioSystems, Vol. 8, Issue 10
DOI: 10.1039/c2mb25133g

Construction of high-density bacterial colony arrays and patterns by the ink-jet method
journal, January 2003

Xu, Tao; Petridou, Sevastioni; Lee, Eric H.
Biotechnology and Bioengineering, Vol. 85, Issue 1
DOI: 10.1002/bit.10768

Dynamic Flux Balance Analysis of Diauxic Growth in Escherichia coli
journal, September 2002

Mahadevan, Radhakrishnan; Edwards, Jeremy S.; Doyle, Francis J.
Biophysical Journal, Vol. 83, Issue 3
DOI: 10.1016/S0006-3495(02)73903-9

Biological laser printing of genetically modified Escherichia coli for biosensor applications
journal, September 2004

Barron, J. A.; Rosen, R.; Jones-Meehan, J.
Biosensors and Bioelectronics, Vol. 20, Issue 2
DOI: 10.1016/j.bios.2004.01.011

Novel Cooperation Experimentally Evolved Between Species
journal, February 2010

Harcombe, William
Evolution
DOI: 10.1111/j.1558-5646.2010.00959.x

Adding biotic complexity alters the metabolic benefits of mutualism: SELECTION FOR MUTUALISM IN A COMMUNITY CONTEXT
journal, June 2016

Harcombe, William R.; Betts, Alex; Shapiro, Jason W.
Evolution, Vol. 70, Issue 8
DOI: 10.1111/evo.12973

Linking Molecular and Population Processes in Mathematical Models of Quorum Sensing
journal, July 2013

Brown, David
Bulletin of Mathematical Biology, Vol. 75, Issue 10
DOI: 10.1007/s11538-013-9870-1

Designing microarray phantoms for hyperspectral imaging validation
journal, January 2012

Clarke, Matthew L.; Lee, Ji Youn; Samarov, Daniel V.
Biomedical Optics Express, Vol. 3, Issue 6
DOI: 10.1364/BOE.3.001291

Single Cell Isolation of Bacteria from Microbial Fuel Cells and Potomac River Sediment
journal, March 2010

Ringeisen, B. R.; Lizewski, S. E.; Fitzgerald, L. A.
Electroanalysis, Vol. 22, Issue 7-8
DOI: 10.1002/elan.200880012

Adult rat retinal ganglion cells and glia can be printed by piezoelectric inkjet printing
journal, December 2013

Lorber, Barbara; Hsiao, Wen-Kai; Hutchings, Ian M.
Biofabrication, Vol. 6, Issue 1
DOI: 10.1088/1758-5082/6/1/015001

BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology
journal, August 2012

Gorochowski, Thomas E.; Matyjaszkiewicz, Antoni; Todd, Thomas
PLoS ONE, Vol. 7, Issue 8
DOI: 10.1371/journal.pone.0042790

Laser engineering of microbial systems
journal, April 2018

Yusupov, V. I.; Gorlenko, M. V.; Cheptsov, V. S.
Laser Physics Letters, Vol. 15, Issue 6
DOI: 10.1088/1612-202X/aab5ef

Developmental Design of Synthetic Bacterial Architectures by Morphogenetic Engineering
journal, June 2016

Pascalie, Jonathan; Potier, Martin; Kowaliw, Taras
ACS Synthetic Biology, Vol. 5, Issue 8
DOI: 10.1021/acssynbio.5b00246

Navigating through models of chemotaxis
journal, February 2008

Iglesias, Pablo A.; Devreotes, Peter N.
Current Opinion in Cell Biology, Vol. 20, Issue 1
DOI: 10.1016/j.ceb.2007.11.011

Similar Records in DOE PAGES and OSTI.GOV collections:

Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities

Journal Article Song, Hyun-Seob ; Lee, Joon-Yong ; Haruta, Shin ; ... - Frontiers in Microbiology

An intriguing aspect in microbial communities is that pairwise interactions can be influenced by neighboring species. This creates context dependencies for microbial interactions that are based on the functional composition of the community. Context dependent interactions are ecologically important and clearly present in nature, yet firmly established theoretical methods are lacking from many modern computational investigations. Here, we propose a novel network inference method that enables predictions for interspecies interactions affected by shifts in community composition and species populations. Our approach first identifies interspecies interactions in binary communities, which is subsequently used as a basis to infer modulation in moremore »« less
Cited by 1
DOI: 10.3389/fmicb.2019.01264
Microbial community assembly differs across minerals in a rhizosphere microcosm

Journal Article Whitman, Thea ; Neurath, Rachel ; Perera, Adele ; ... - Environmental Microbiology

Mineral–associated microbes drive many critical soil processes, including mineral weathering, soil aggregation and cycling of mineral–sorbed organic matter. To investigate the interactions between soil minerals and microbes in the rhizosphere, we incubated three types of minerals (ferrihydrite, kaolinite and quartz) and a native soil mineral fraction near roots of a common Californian annual grass, Avena barbata, growing in its resident soil. We followed microbial colonization of these minerals for up to 2.5 months – the plant's lifespan. Bacteria and fungi that colonized mineral surfaces during this experiment differed across mineral types and differed from those in the background soil, implyingmore »« less
Cited by 11
DOI: 10.1111/1462-2920.14366

Full Text Available
Special Issue: Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics

Journal Article Song, Hyun-Seob - Processes

Microbial communities are networks of species, the interaction structure of which dynamically reorganizes in a varying environment. Even in a static condition, community dynamics are often difficult to predict due to highly nonlinear interspecies interactions. Understanding the fundamental principles of microbial interactions is therefore key for predicting and harnessing community function and properties. As extensively reviewed previously, mathematical models and computational methods that can predictively link interactions to community behaviors are indispensable tools for achieving this goal.
DOI: 10.3390/pr6050041

Full Text Available
Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil

Journal Article Brisson, Vanessa L. ; Schmidt, Jennifer E. ; Northen, Trent R. ; ... - Scientific Reports

Maize domestication and breeding have resulted in drastic and well documented changes in aboveground traits, but belowground effects on root system functioning and rhizosphere microbial communities remain poorly understood, despite their critical importance for nutrient and water acquisition. We investigated the rhizosphere microbial community composition and structure of ten Zea mays accessions along an evolutionary transect (two teosinte, three inbred maize lines, and five modern maize hybrids) grown in nutrient depleted soil from a low input agricultural system. Microbial community analysis revealed significant differences in community composition between soil compartments (proximal vs. distal rhizosphere) and between plant genetic groups (teosinte,more »« less
DOI: 10.1038/s41598-019-52148-y

Full Text Available
Enrichment of microbial communities tolerant to the ionic liquids tetrabutylphosphonium chloride and tributylethylphosphonium diethylphosphate

Journal Article Pace, Sara ; Ceballos, Shannon J. ; Harrold, Duff ; ... - Applied Microbiology and Biotechnology

Our aims were to identify thermophilic microbial communities that degrade green waste in the presence of the ionic liquids (IL) tetrabutylphosphonium chloride and tributylethylphosphonium diethylphosphate and examine preservation methods for IL-tolerant communities. High-solids incubations with stepwise increases in IL concentration were conducted to enrich for thermophilic IL-tolerant communities that decomposed green waste. 16S rRNA sequencing of enriched communities revealed microorganisms capable of tolerating high levels of IL. Furthermore, cryogenic preservation of enriched communities reduced the IL tolerance of the community and decreased the relative abundance of IL-tolerant organisms. The use of cryoprotectants did not have an effect on microbial activitymore »« less
Cited by 3
DOI: 10.1007/s00253-016-7525-5

Full Text Available

Similar Records

Title: Bioprinting microbial communities to examine interspecies interactions in time and space

Citation Formats

A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011 journal, January 2011

Controlling laser-induced jet formation for bioprinting mesenchymal stem cells with high viability and high resolution journal, September 2014

Generation of mesoscopic patterns of viable Escherichia coli by ambient laser transfer journal, January 2002

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction journal, January 2009

Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium journal, October 2007

Defined spatial structure stabilizes a synthetic multispecies bacterial community journal, November 2008

Bacterial Small-Molecule Signaling Pathways journal, February 2006

A hydrogel bioink toolkit for mimicking native tissue biochemical and mechanical properties in bioprinted tissue constructs journal, October 2015

What is microbial community ecology? journal, August 2009

Thermal Inkjet Printing in Tissue Engineering and Regenerative Medicine journal, May 2012

Metabolic modeling of a mutualistic microbial community journal, January 2007

Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics journal, May 2014

Printing Multistrain Bacterial Patterns with a Piezoelectric Inkjet Printer journal, July 2007

The spatial and metabolic basis of colony size variation journal, January 2018

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants the Keio collection journal, February 2006

Local dispersal promotes biodiversity in a real-life game of rock–paper–scissors journal, July 2002

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. journal, January 1994

Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens journal, April 2013

Engineering microbial consortia: a new frontier in synthetic biology journal, September 2008

Biomimicry of quorum sensing using bacterial lifecycle model journal, May 2013

Calibration and analysis of genome-based models for microbial ecology journal, October 2015

COOPERATIVE ORGANIZATION OF BACTERIAL COLONIES: From Genotype to Morphotype journal, October 1998

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities journal, January 2011

Patterning and transferring hydrogel-encapsulated bacterial cells for quantitative analysis of synthetically engineered genetic circuits journal, January 2012

A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database journal, January 2014

Engineering ecosystems and synthetic ecologies journal, January 2012

Construction of high-density bacterial colony arrays and patterns by the ink-jet method journal, January 2003

Dynamic Flux Balance Analysis of Diauxic Growth in Escherichia coli journal, September 2002

Biological laser printing of genetically modified Escherichia coli for biosensor applications journal, September 2004

Novel Cooperation Experimentally Evolved Between Species journal, February 2010

Adding biotic complexity alters the metabolic benefits of mutualism: SELECTION FOR MUTUALISM IN A COMMUNITY CONTEXT journal, June 2016

Linking Molecular and Population Processes in Mathematical Models of Quorum Sensing journal, July 2013

Designing microarray phantoms for hyperspectral imaging validation journal, January 2012

Single Cell Isolation of Bacteria from Microbial Fuel Cells and Potomac River Sediment journal, March 2010

Adult rat retinal ganglion cells and glia can be printed by piezoelectric inkjet printing journal, December 2013

BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology journal, August 2012

Laser engineering of microbial systems journal, April 2018

Developmental Design of Synthetic Bacterial Architectures by Morphogenetic Engineering journal, June 2016

Navigating through models of chemotaxis journal, February 2008

A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011
journal, January 2011

Controlling laser-induced jet formation for bioprinting mesenchymal stem cells with high viability and high resolution
journal, September 2014

Generation of mesoscopic patterns of viable Escherichia coli by ambient laser transfer
journal, January 2002

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction
journal, January 2009

Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium
journal, October 2007

Defined spatial structure stabilizes a synthetic multispecies bacterial community
journal, November 2008

Bacterial Small-Molecule Signaling Pathways
journal, February 2006

A hydrogel bioink toolkit for mimicking native tissue biochemical and mechanical properties in bioprinted tissue constructs
journal, October 2015

What is microbial community ecology?
journal, August 2009

Thermal Inkjet Printing in Tissue Engineering and Regenerative Medicine
journal, May 2012

Metabolic modeling of a mutualistic microbial community
journal, January 2007

Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics
journal, May 2014

Printing Multistrain Bacterial Patterns with a Piezoelectric Inkjet Printer
journal, July 2007

The spatial and metabolic basis of colony size variation
journal, January 2018

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants the Keio collection
journal, February 2006

Local dispersal promotes biodiversity in a real-life game of rock–paper–scissors
journal, July 2002

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.
journal, January 1994

Development of an Optimized Medium, Strain and High-Throughput Culturing Methods for Methylobacterium extorquens
journal, April 2013

Engineering microbial consortia: a new frontier in synthetic biology
journal, September 2008

Biomimicry of quorum sensing using bacterial lifecycle model
journal, May 2013

Calibration and analysis of genome-based models for microbial ecology
journal, October 2015

COOPERATIVE ORGANIZATION OF BACTERIAL COLONIES: From Genotype to Morphotype
journal, October 1998

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities
journal, January 2011

Patterning and transferring hydrogel-encapsulated bacterial cells for quantitative analysis of synthetically engineered genetic circuits
journal, January 2012

A genome-scale metabolic flux model of Escherichia coli K–12 derived from the EcoCyc database
journal, January 2014

Engineering ecosystems and synthetic ecologies
journal, January 2012

Construction of high-density bacterial colony arrays and patterns by the ink-jet method
journal, January 2003

Dynamic Flux Balance Analysis of Diauxic Growth in Escherichia coli
journal, September 2002

Biological laser printing of genetically modified Escherichia coli for biosensor applications
journal, September 2004

Novel Cooperation Experimentally Evolved Between Species
journal, February 2010

Adding biotic complexity alters the metabolic benefits of mutualism: SELECTION FOR MUTUALISM IN A COMMUNITY CONTEXT
journal, June 2016

Linking Molecular and Population Processes in Mathematical Models of Quorum Sensing
journal, July 2013

Designing microarray phantoms for hyperspectral imaging validation
journal, January 2012

Single Cell Isolation of Bacteria from Microbial Fuel Cells and Potomac River Sediment
journal, March 2010

Adult rat retinal ganglion cells and glia can be printed by piezoelectric inkjet printing
journal, December 2013

BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology
journal, August 2012

Laser engineering of microbial systems
journal, April 2018

Developmental Design of Synthetic Bacterial Architectures by Morphogenetic Engineering
journal, June 2016

Navigating through models of chemotaxis
journal, February 2008