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Title: A biological perspective towards a standard for information exchange and reporting in XAS

Abstract

The complex structural landscape of biological samples and their sensitivity to X-ray exposure leads to specific challenges in biological X-ray absorption spectroscopy (bio-XAS) research, which in turn has necessitated standardization of various aspects of bio-XAS data measurement, analysis and interpretation. The bio-XAS community is therefore well suited for the development of a data-reporting standard with the specific aim of creating a feedback loop for improving/standardizing data analysis protocols and optionally to make published data available to collaborators/researchers in a meaningful and quantitative format. The XIF (XAFS information file) reporting format presented here contains key experimental and analysis parameters, useful in developing a consistent platform for bio-XAS research worldwide. Such a reporting standard, enforced by the user community and publishing groups alike, can be an important step towards the standardization of data measurement and analysis techniques in bio-XAS.

Authors:
 [1]
  1. SLAC National Accelerator Lab., Menlo Park, CA (United States). Structural Molecular Biology. Stanford Synchrotron Radiation Lightsource
Publication Date:
Research Org.:
SLAC National Accelerator Lab., Menlo Park, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23); National Inst. of Health (NIH) (United States)
OSTI Identifier:
1461816
Grant/Contract Number:  
AC02-76SF00515; P41GM103393
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Synchrotron Radiation (Online)
Additional Journal Information:
Journal Name: Journal of Synchrotron Radiation (Online); Journal Volume: 25; Journal Issue: 4; Journal ID: ISSN 1600-5775
Publisher:
International Union of Crystallography
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 96 KNOWLEDGE MANAGEMENT AND PRESERVATION; biological XAS; EXAFS analysis; data reporting standard

Citation Formats

Sarangi, Ritimukta. A biological perspective towards a standard for information exchange and reporting in XAS. United States: N. p., 2018. Web. doi:10.1107/s1600577518008779.
Sarangi, Ritimukta. A biological perspective towards a standard for information exchange and reporting in XAS. United States. doi:10.1107/s1600577518008779.
Sarangi, Ritimukta. Wed . "A biological perspective towards a standard for information exchange and reporting in XAS". United States. doi:10.1107/s1600577518008779. https://www.osti.gov/servlets/purl/1461816.
@article{osti_1461816,
title = {A biological perspective towards a standard for information exchange and reporting in XAS},
author = {Sarangi, Ritimukta},
abstractNote = {The complex structural landscape of biological samples and their sensitivity to X-ray exposure leads to specific challenges in biological X-ray absorption spectroscopy (bio-XAS) research, which in turn has necessitated standardization of various aspects of bio-XAS data measurement, analysis and interpretation. The bio-XAS community is therefore well suited for the development of a data-reporting standard with the specific aim of creating a feedback loop for improving/standardizing data analysis protocols and optionally to make published data available to collaborators/researchers in a meaningful and quantitative format. The XIF (XAFS information file) reporting format presented here contains key experimental and analysis parameters, useful in developing a consistent platform for bio-XAS research worldwide. Such a reporting standard, enforced by the user community and publishing groups alike, can be an important step towards the standardization of data measurement and analysis techniques in bio-XAS.},
doi = {10.1107/s1600577518008779},
journal = {Journal of Synchrotron Radiation (Online)},
number = 4,
volume = 25,
place = {United States},
year = {2018},
month = {6}
}

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