Microbial interactions: from networks to models
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journal
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July 2012 |
Global patterns in bacterial diversity
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journal
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June 2007 |
The Marine Clade of the Family Flavobacteriaceae: The Genera Aequorivita, Arenibacter, Cellulophaga, Croceibacter, Formosa, Gelidibacter, Gillisia, Maribacter, Mesonia, Muricauda, Polaribacter, Psychroflexus, Psychroserpens, Robiginitalea, Salegentibacter, Tenacibaculum, Ulvibacter, Vitellibacter and Zobellia
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book
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January 2006 |
Comparative genomics of the marine bacterial genus G laciecola reveals the high degree of genomic diversity and genomic characteristic for cold adaptation : Comparative genomics of the marine genus
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journal
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November 2013 |
Identification of GH15 Family Thermophilic Archaeal Trehalases That Function within a Narrow Acidic-pH Range
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journal
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May 2015 |
Genome Sequence of Halomonas sp. Strain KO116, an Ionic Liquid-Tolerant Marine Bacterium Isolated from a Lignin-Enriched Seawater Microcosm
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journal
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May 2015 |
Characterization of a metagenome-derived halotolerant cellulase
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journal
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October 2006 |
New Abundant Microbial Groups in Aquatic Hypersaline Environments
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journal
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October 2011 |
Characterization and radiation resistance of new isolates of Rubrobacter radiotolerans and Rubrobacter xylanophilus
|
journal
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November 1999 |
Bacterial chitin utilisation at extremely haloalkaline conditions
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journal
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September 2012 |
The ade4 Package: Implementing the Duality Diagram for Ecologists
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journal
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January 2007 |
Glycosyltransferases and oligosaccharyltransferases in Archaea: putative components of the N -glycosylation pathway in the third domain of life
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journal
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November 2009 |
ggplot2
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book
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January 2009 |
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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journal
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August 2017 |
ChloroplastDB: the Chloroplast Genome Database
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journal
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January 2006 |
Thiohalobacter thiocyanaticus gen. nov., sp. nov., a moderately halophilic, sulfur-oxidizing gammaproteobacterium from hypersaline lakes, that utilizes thiocyanate
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journal
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August 2009 |
Phylogenetic Distribution of Potential Cellulases in Bacteria
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journal
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December 2012 |
Fast and accurate short read alignment with Burrows-Wheeler transform
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journal
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May 2009 |
Applying metagenomics for the identification of bacterial cellulases that are stable in ionic liquids
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journal
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January 2009 |
Diversity of halophilic microorganisms: Environments, phylogeny, physiology, and applications
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journal
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January 2002 |
Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)
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journal
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December 2014 |
Data, information, knowledge and principle: back to metabolism in KEGG
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journal
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November 2013 |
Demonstrating microbial co-occurrence pattern analyses within and between ecosystems
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journal
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July 2014 |
Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification
|
journal
|
July 2010 |
Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community
|
journal
|
December 2013 |
Genomic analysis reveals the biotechnological and industrial potential of levan producing halophilic extremophile, Halomonas smyrnensis AAD6T
|
journal
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August 2015 |
Biodegradation of Organic Pollutants by Halophilic Bacteria and Archaea
- Le Borgne, Sylvie; Paniagua, Dayanira; Vazquez-Duhalt, Rafael
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Journal of Molecular Microbiology and Biotechnology, Vol. 15, Issue 2-3
https://doi.org/10.1159/000121323
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journal
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January 2008 |
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
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journal
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June 2007 |
Life at high salt concentrations, intracellular KCl concentrations, and acidic proteomes
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journal
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January 2013 |
Prokaryotic Community Diversity Along an Increasing Salt Gradient in a Soda Ash Concentration Pond
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journal
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September 2015 |
Living with salt: metabolic and phylogenetic diversity of archaea inhabiting saline ecosystems
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journal
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March 2012 |
Gene cloning, expression and characterization of a new cold-active and salt-tolerant endo-β-1,4-xylanase from marine Glaciecola mesophila KMM 241
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journal
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June 2009 |
Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern
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journal
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June 2002 |
Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid tolerance
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journal
|
January 2011 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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journal
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March 2010 |
Relationship of sequence and structure to specificity in the α-amylase family of enzymes
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journal
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March 2001 |
Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics
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journal
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April 2014 |
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
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journal
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May 2012 |
Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190
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journal
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March 2004 |
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
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journal
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October 2015 |
Cyanobacterial reuse of extracellular organic carbon in microbial mats
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journal
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October 2015 |
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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journal
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May 2015 |
Potential halophilic cellulases for in situ enzymatic saccharification of ionic liquids pretreated lignocelluloses
|
journal
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March 2014 |
Primer and platform effects on 16S rRNA tag sequencing
|
journal
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August 2015 |
Molecular mechanisms underlying roseobacter–phytoplankton symbioses
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journal
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June 2010 |
Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments
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journal
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September 1998 |
Extremophiles as a source for novel enzymes
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journal
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June 2003 |
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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journal
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April 2013 |
Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm
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journal
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June 2016 |
Salt-activated endoglucanase of a strain of alkaliphilic Bacillus agaradhaerens
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journal
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April 2006 |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
|
journal
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April 2012 |
Recent trends in ionic liquid (IL) tolerant enzymes and microorganisms for biomass conversion
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journal
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October 2013 |
Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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journal
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October 2013 |
How to be moderately halophilic with broad salt tolerance: clues from the genome of Chromohalobacter salexigens
|
journal
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May 2005 |
Complete Genome Sequence of the Marine Cellulose- and Xylan-Degrading Bacterium Glaciecolasp. Strain 4H-3-7+YE-5
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journal
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June 2011 |
Microbial Diversity in Deep-sea Methane Seep Sediments Presented by SSU rRNA Gene Tag Sequencing
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journal
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January 2012 |
Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the Halobacteriales
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journal
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September 2013 |
The carbohydrate-active enzymes database (CAZy) in 2013
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journal
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November 2013 |
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
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journal
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May 2013 |
Ecological Patterns Among Bacteria and Microbial Eukaryotes Derived from Network Analyses in a Low-Salinity Lake
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journal
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November 2017 |
Using network analysis to explore co-occurrence patterns in soil microbial communities
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journal
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September 2011 |
Halophilic hydrolases as a new tool for the biotechnological industries
- Delgado-García, Mariana; Valdivia-Urdiales, Blanca; Aguilar-González, Cristóbal Noe
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Journal of the Science of Food and Agriculture, Vol. 92, Issue 13
https://doi.org/10.1002/jsfa.5860
|
journal
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August 2012 |
Variability in habitat value of commercial salt production ponds: implications for waterbird management and tidal marsh restoration planning
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journal
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May 2012 |
Genomic Potential for Polysaccharide Deconstruction in Bacteria
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journal
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December 2014 |
BLAST+: architecture and applications
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journal
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January 2009 |
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
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journal
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May 2014 |
Microbial diversity of hypersaline environments: a metagenomic approach
|
journal
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June 2015 |
Genome-wide analysis of lysine catabolism in bacteria reveals new connections with osmotic stress resistance
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journal
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July 2013 |
Microbial seed banks: the ecological and evolutionary implications of dormancy
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journal
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January 2011 |
Xyloglucan Is Recognized by Carbohydrate-binding Modules That Interact with β-Glucan Chains
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journal
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November 2005 |
Integrative analysis of environmental sequences using MEGAN4
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journal
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June 2011 |
Recent studies in microbial degradation of petroleum hydrocarbons in hypersaline environments
|
journal
|
April 2014 |
Sialic Acid Recognition by Vibrio cholerae Neuraminidase
|
journal
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June 2004 |
FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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journal
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September 2014 |
A novel salt-tolerant endo-β-1,4-glucanase Cel5A in Vibrio sp. G21 isolated from mangrove soil
|
journal
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April 2010 |
Genome-Based Taxonomic Classification of Bacteroidetes
|
journal
|
December 2016 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
|
journal
|
December 2014 |
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
|
journal
|
January 2014 |
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
|
journal
|
January 2013 |
Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture.
|
journal
|
January 1996 |
Bioenergetic Aspects of Halophilism
|
journal
|
June 1999 |
Biology of Moderately Halophilic Aerobic Bacteria
|
journal
|
June 1998 |
Diversity of halophilic microorganisms: Environments, phylogeny, physiology, and applications
|
journal
|
January 2002 |
Molecular profiling of microbial community structure and their CAZymes via metagenomics, from Tsomgo lake in the Eastern Himalayas
|
journal
|
April 2021 |
Diversity and composition of the North Sikkim hot spring mycobiome using a culture-independent method
|
journal
|
March 2021 |
Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander
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journal
|
April 2020 |
Biogeographical patterns and mechanisms of microbial community assembly that underlie successional biocrusts across northern China
|
journal
|
February 2021 |
Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture
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journal
|
March 2021 |
Primer and platform effects on 16S rRNA tag sequencing
|
text
|
January 2015 |
Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)
|
text
|
January 2015 |
Erratum: Using network analysis to explore co-occurrence patterns in soil microbial communities
|
journal
|
March 2014 |
Halophilic hydrolases as a new tool for the biotechnological industries
- Delgado-García, Mariana; Valdivia-Urdiales, Blanca; Aguilar-González, Cristóbal Noe
-
Journal of the Science of Food and Agriculture, Vol. 92, Issue 13
https://doi.org/10.1002/jsfa.5860
|
journal
|
August 2012 |
Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments
|
journal
|
September 1998 |
Prokaryotic Community Diversity Along an Increasing Salt Gradient in a Soda Ash Concentration Pond
|
journal
|
September 2015 |
Gene cloning, expression and characterization of a new cold-active and salt-tolerant endo-β-1,4-xylanase from marine Glaciecola mesophila KMM 241
|
journal
|
June 2009 |
A novel salt-tolerant endo-β-1,4-glucanase Cel5A in Vibrio sp. G21 isolated from mangrove soil
|
journal
|
April 2010 |
Salinimonas marina sp. nov. Isolated from Jeju Island Marine Sediment
|
journal
|
June 2021 |
How to be moderately halophilic with broad salt tolerance: clues from the genome of Chromohalobacter salexigens
|
journal
|
May 2005 |
Bacterial chitin utilisation at extremely haloalkaline conditions
|
journal
|
September 2012 |
Characterization and radiation resistance of new isolates of Rubrobacter radiotolerans and Rubrobacter xylanophilus
|
journal
|
November 1999 |
Salt-activated endoglucanase of a strain of alkaliphilic Bacillus agaradhaerens
|
journal
|
April 2006 |
Variability in habitat value of commercial salt production ponds: implications for waterbird management and tidal marsh restoration planning
|
journal
|
May 2012 |
Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification
|
journal
|
July 2010 |
Potential halophilic cellulases for in situ enzymatic saccharification of ionic liquids pretreated lignocelluloses
|
journal
|
March 2014 |
Molecular mechanisms underlying roseobacter–phytoplankton symbioses
|
journal
|
June 2010 |
Characterization of a metagenome-derived halotolerant cellulase
|
journal
|
October 2006 |
Microbial diversity of hypersaline environments: a metagenomic approach
|
journal
|
June 2015 |
Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community
|
journal
|
December 2013 |
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
|
journal
|
January 2014 |
Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)
|
journal
|
December 2014 |
Cyanobacterial reuse of extracellular organic carbon in microbial mats
|
journal
|
October 2015 |
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
|
journal
|
May 2013 |
Microbial interactions: from networks to models
|
journal
|
July 2012 |
Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group
|
journal
|
February 2022 |
Targeted A-to-G base editing of chloroplast DNA in plants
|
journal
|
December 2022 |
Genome-wide genetic diversity yields insights into genomic responses of candidate climate-selected loci in an Andean wetland plant
|
journal
|
October 2020 |
New Abundant Microbial Groups in Aquatic Hypersaline Environments
|
journal
|
October 2011 |
Applying metagenomics for the identification of bacterial cellulases that are stable in ionic liquids
|
journal
|
January 2009 |
Identification of a haloalkaliphilic and thermostable cellulase with improved ionic liquid tolerance
|
journal
|
January 2011 |
Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern
|
journal
|
June 2002 |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
|
journal
|
April 2012 |
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
|
journal
|
October 2015 |
ChloroplastDB: the Chloroplast Genome Database
|
journal
|
January 2006 |
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
|
journal
|
May 2012 |
Data, information, knowledge and principle: back to metabolism in KEGG
|
journal
|
November 2013 |
Thiohalobacter thiocyanaticus gen. nov., sp. nov., a moderately halophilic, sulfur-oxidizing gammaproteobacterium from hypersaline lakes, that utilizes thiocyanate
|
journal
|
August 2009 |
Integrative analysis of environmental sequences using MEGAN4
|
journal
|
June 2011 |
Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics
|
journal
|
April 2014 |
Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190
|
journal
|
March 2004 |
Glycosyltransferases and oligosaccharyltransferases in Archaea: putative components of the N -glycosylation pathway in the third domain of life
|
journal
|
November 2009 |
Living with salt: metabolic and phylogenetic diversity of archaea inhabiting saline ecosystems
|
journal
|
March 2012 |
Biodegradation of Organic Pollutants by Halophilic Bacteria and Archaea
- Le Borgne, Sylvie; Paniagua, Dayanira; Vazquez-Duhalt, Rafael
-
Journal of Molecular Microbiology and Biotechnology, Vol. 15, Issue 2-3
https://doi.org/10.1159/000121323
|
journal
|
January 2008 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
|
journal
|
March 2010 |
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
|
journal
|
January 2013 |
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
|
journal
|
December 2014 |
Genomic analysis reveals the biotechnological and industrial potential of levan producing halophilic extremophile, Halomonas smyrnensis AAD6T
|
journal
|
August 2015 |
Recent trends in ionic liquid (IL) tolerant enzymes and microorganisms for biomass conversion
|
journal
|
October 2013 |
Recent studies in microbial degradation of petroleum hydrocarbons in hypersaline environments
|
journal
|
April 2014 |
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
|
journal
|
May 2014 |
Demonstrating microbial co-occurrence pattern analyses within and between ecosystems
|
journal
|
July 2014 |
Genome-Based Taxonomic Classification of Bacteroidetes
|
journal
|
December 2016 |