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Title: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Abstract

Here, we present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome- Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.

Authors:
 [1];  [1];  [2];  [1];  [1];  [1];  [1];  [1];  [3];  [1];  [4];  [1];  [1];  [1];  [2];  [1];  [5];  [6];  [7];  [8] more »;  [9];  [10];  [11];  [12];  [13];  [14];  [15];  [16];  [17];  [18];  [19];  [20];  [21];  [22];  [23];  [24];  [25];  [26];  [27];  [28];  [29];  [29];  [30];  [31];  [31];  [32];  [33];  [13];  [31];  [34];  [35];  [36];  [31];  [4] « less
+ Show Author Affiliations
  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  2. Bigelow Lab for Ocean Sciences, East Boothbay, ME (United States)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); United States Dept. of Agriculture, Gainesville, FL (United States)
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Merced, CA (United States)
  5. Broad Institute, Cambridge, MA (United States)
  6. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  7. European Molecular Biology Lab, Heidelberg (Germany)
  8. The Jackson Lab. for Genomic Medicine, Farmington, CT (United States)
  9. Michigan State Univ., East Lansing, MI (United States)
  10. California State Univ., San Bernardino, CA (United States)
  11. J. Craig Venter Institute, San Diego, CA (United States)
  12. J. Craig Venter Institute, Rockville, MD (United States)
  13. Max Planck Institute for Marine Microbiology, Bremen (Germany)
  14. Argonne National Lab. (ANL), Argonne, IL (United States); Univ. of Chicago, Chicago, IL (United States)
  15. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
  16. Univ. of British Columbia, Vancouver, BC (Canada)
  17. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of Southern California, Los Angeles, CA (United States)
  18. Uppsala Univ., Uppsala (Sweden)
  19. Univ. of Vermont Cancer Center, Burlington, VT (United States)
  20. Georgia Inst. of Technology, Atlanta, GA (United States)
  21. Univ. of Illinois Urbana-Champaign, Urbana, IL (United States)
  22. Univ. of Texas-Austin, Austin, TX (United States)
  23. Univ. of Vienna, Vienna (Austria)
  24. Univ. of California, Davis, CA (United States)
  25. Univ. of Nevada, Las Vegas, NV (United States)
  26. Univ. of Wisconsin-Madison, Madison, WI (United States)
  27. Univ. of Colorado, Boulder, CO (United States)
  28. Univ. of California San Diego, La Jolla, CA (United States)
  29. Welcome Trust Genome Campus, Cambridge (United Kingdom)
  30. National Institutes of Health, Bethesda, MD (United States)
  31. The Univ. of Queensland, Queensland (Australia)
  32. St. Petersburg State Univ., St. Petersburg (Russia)
  33. Argonne National Lab. (ANL), Argonne, IL (United States)
  34. Knapp Center for Biomedical Discovery, Chicago, IL (United States)
  35. National Cancer Institute, Frederick, MD (United States)
  36. Univ. of California, Berkeley, CA (United States)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1459401
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Nature Biotechnology
Additional Journal Information:
Journal Volume: 36; Journal Issue: 2; Journal ID: ISSN 1087-0156
Publisher:
Springer Nature
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Bowers, Robert M., Kyrpides, Nikos C., Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T. B. K., Schulz, Frederik, Jarett, Jessica, Rivers, Adam R., Eloe-Fadrosh, Emiley A., Tringe, Susannah G., Ivanova, Natalia N., Copeland, Alex, Clum, Alicia, Becraft, Eric D., Malmstrom, Rex R., Birren, Bruce, Podar, Mircea, Bork, Peer, Weinstock, George M., Garrity, George M., Dodsworth, Jeremy A., Yooseph, Shibu, Sutton, Granger, Glockner, Frank O., Gilbert, Jack A., Nelson, William C., Hallam, Steven J., Jungbluth, Sean P., Ettema, Thijs J. G., Tighe, Scott, Konstantinidis, Konstantinos T., Liu, Wen -Tso, Baker, Brett J., Rattei, Thomas, Eisen, Jonathan A., Hedlund, Brian, McMahon, Katherine D., Fierer, Noah, Knight, Rob, Finn, Rob, Cochrane, Guy, Karsch-Mizrachi, Ilene, Tyson, Gene W., Rinke, Christian, Lapidus, Alla, Meyer, Folker, Yilmaz, Pelin, Parks, Donovan H., Eren, A. Murat, Schriml, Lynn, Banfield, Jillian F., Hugenholtz, Philip, and Woyke, Tanja. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. United States: N. p., 2017. Web. doi:10.1038/nbt0218-196a.
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Bowers, Robert M., Kyrpides, Nikos C., Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T. B. K., Schulz, Frederik, Jarett, Jessica, Rivers, Adam R., Eloe-Fadrosh, Emiley A., Tringe, Susannah G., Ivanova, Natalia N., Copeland, Alex, Clum, Alicia, Becraft, Eric D., Malmstrom, Rex R., Birren, Bruce, Podar, Mircea, Bork, Peer, Weinstock, George M., Garrity, George M., Dodsworth, Jeremy A., Yooseph, Shibu, Sutton, Granger, Glockner, Frank O., Gilbert, Jack A., Nelson, William C., Hallam, Steven J., Jungbluth, Sean P., Ettema, Thijs J. G., Tighe, Scott, Konstantinidis, Konstantinos T., Liu, Wen -Tso, Baker, Brett J., Rattei, Thomas, Eisen, Jonathan A., Hedlund, Brian, McMahon, Katherine D., Fierer, Noah, Knight, Rob, Finn, Rob, Cochrane, Guy, Karsch-Mizrachi, Ilene, Tyson, Gene W., Rinke, Christian, Lapidus, Alla, Meyer, Folker, Yilmaz, Pelin, Parks, Donovan H., Eren, A. Murat, Schriml, Lynn, Banfield, Jillian F., Hugenholtz, Philip, & Woyke, Tanja. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. United States. https://doi.org/10.1038/nbt0218-196a
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Bowers, Robert M., Kyrpides, Nikos C., Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T. B. K., Schulz, Frederik, Jarett, Jessica, Rivers, Adam R., Eloe-Fadrosh, Emiley A., Tringe, Susannah G., Ivanova, Natalia N., Copeland, Alex, Clum, Alicia, Becraft, Eric D., Malmstrom, Rex R., Birren, Bruce, Podar, Mircea, Bork, Peer, Weinstock, George M., Garrity, George M., Dodsworth, Jeremy A., Yooseph, Shibu, Sutton, Granger, Glockner, Frank O., Gilbert, Jack A., Nelson, William C., Hallam, Steven J., Jungbluth, Sean P., Ettema, Thijs J. G., Tighe, Scott, Konstantinidis, Konstantinos T., Liu, Wen -Tso, Baker, Brett J., Rattei, Thomas, Eisen, Jonathan A., Hedlund, Brian, McMahon, Katherine D., Fierer, Noah, Knight, Rob, Finn, Rob, Cochrane, Guy, Karsch-Mizrachi, Ilene, Tyson, Gene W., Rinke, Christian, Lapidus, Alla, Meyer, Folker, Yilmaz, Pelin, Parks, Donovan H., Eren, A. Murat, Schriml, Lynn, Banfield, Jillian F., Hugenholtz, Philip, and Woyke, Tanja. Tue . "Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea". United States. https://doi.org/10.1038/nbt0218-196a. https://www.osti.gov/servlets/purl/1459401.
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@article{osti_1459401,
title = {Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea},
author = {Bowers, Robert M. and Kyrpides, Nikos C. and Stepanauskas, Ramunas and Harmon-Smith, Miranda and Doud, Devin and Reddy, T. B. K. and Schulz, Frederik and Jarett, Jessica and Rivers, Adam R. and Eloe-Fadrosh, Emiley A. and Tringe, Susannah G. and Ivanova, Natalia N. and Copeland, Alex and Clum, Alicia and Becraft, Eric D. and Malmstrom, Rex R. and Birren, Bruce and Podar, Mircea and Bork, Peer and Weinstock, George M. and Garrity, George M. and Dodsworth, Jeremy A. and Yooseph, Shibu and Sutton, Granger and Glockner, Frank O. and Gilbert, Jack A. and Nelson, William C. and Hallam, Steven J. and Jungbluth, Sean P. and Ettema, Thijs J. G. and Tighe, Scott and Konstantinidis, Konstantinos T. and Liu, Wen -Tso and Baker, Brett J. and Rattei, Thomas and Eisen, Jonathan A. and Hedlund, Brian and McMahon, Katherine D. and Fierer, Noah and Knight, Rob and Finn, Rob and Cochrane, Guy and Karsch-Mizrachi, Ilene and Tyson, Gene W. and Rinke, Christian and Lapidus, Alla and Meyer, Folker and Yilmaz, Pelin and Parks, Donovan H. and Eren, A. Murat and Schriml, Lynn and Banfield, Jillian F. and Hugenholtz, Philip and Woyke, Tanja},
abstractNote = {Here, we present two standards developed by the Genomic Standards Consortium (GSC) for reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum Information about Any (x) Sequence (MIxS). The standards are the Minimum Information about a Single Amplified Genome (MISAG) and the Minimum Information about a Metagenome- Assembled Genome (MIMAG), including, but not limited to, assembly quality, and estimates of genome completeness and contamination. These standards can be used in combination with other GSC checklists, including the Minimum Information about a Genome Sequence (MIGS), Minimum Information about a Metagenomic Sequence (MIMS), and Minimum Information about a Marker Gene Sequence (MIMARKS). Community-wide adoption of MISAG and MIMAG will facilitate more robust comparative genomic analyses of bacterial and archaeal diversity.},
doi = {10.1038/nbt0218-196a},
journal = {Nature Biotechnology},
number = 2,
volume = 36,
place = {United States},
year = {Tue Aug 08 00:00:00 EDT 2017},
month = {Tue Aug 08 00:00:00 EDT 2017}
}
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Works referenced in this record:

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
journal, August 2017

  • Bowers, Robert M.; Kyrpides, Nikos C.; Stepanauskas, Ramunas
  • Nature Biotechnology, Vol. 35, Issue 8
  • DOI: 10.1038/nbt.3893

Binning Metagenomic Contigs Using Unsupervised Clustering and Reference Databases
journal, May 2022

  • Jiang, Zhongjun; Li, Xiaobo; Guo, Lijun
  • Interdisciplinary Sciences: Computational Life Sciences, Vol. 14, Issue 4
  • DOI: 10.1007/s12539-022-00526-y

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment
journal, October 2013

  • Glass, Elizabeth M.; Dribinsky, Yekaterina; Yilmaz, Pelin
  • The ISME Journal, Vol. 8, Issue 1
  • DOI: 10.1038/ismej.2013.176

RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria
journal, May 2016

  • Wrighton, Kelly C.; Castelle, Cindy J.; Varaljay, Vanessa A.
  • The ISME Journal, Vol. 10, Issue 11
  • DOI: 10.1038/ismej.2016.53

Genome sequencing in microfabricated high-density picolitre reactors
journal, July 2005

  • Margulies, Marcel; Egholm, Michael; Altman, William E.
  • Nature, Vol. 437, Issue 7057, p. 376-380
  • DOI: 10.1038/nature03959

Accurate whole human genome sequencing using reversible terminator chemistry
journal, November 2008

  • Bentley, David R.; Balasubramanian, Shankar; Swerdlow, Harold P.
  • Nature, Vol. 456, Issue 7218
  • DOI: 10.1038/nature07517

Insights into the phylogeny and coding potential of microbial dark matter
journal, July 2013

  • Rinke, Christian; Schwientek, Patrick; Sczyrba, Alexander
  • Nature, Vol. 499, Issue 7459
  • DOI: 10.1038/nature12352

Single-cell sequencing in its prime
journal, March 2013

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
journal, July 2014

  • Nielsen, H. Bjørn; Almeida, Mathieu; Juncker, Agnieszka Sierakowska
  • Nature Biotechnology, Vol. 32, Issue 8
  • DOI: 10.1038/nbt.2939

Single-cell genomics
journal, June 2006

  • Hutchison, Clyde A.; Venter, J. Craig
  • Nature Biotechnology, Vol. 24, Issue 6
  • DOI: 10.1038/nbt0606-657

The minimum information about a genome sequence (MIGS) specification
journal, May 2008

  • Field, Dawn; Garrity, George; Gray, Tanya
  • Nature Biotechnology, Vol. 26, Issue 5
  • DOI: 10.1038/nbt1360

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
journal, January 2016

  • Eloe-Fadrosh, Emiley A.; Paez-Espino, David; Jarett, Jessica
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms10476

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
journal, August 2013

  • Castelle, Cindy J.; Hug, Laura A.; Wrighton, Kelly C.
  • Nature Communications, Vol. 4, Issue 1
  • DOI: 10.1038/ncomms3120

Accurate and universal delineation of prokaryotic species
journal, July 2013

  • Mende, Daniel R.; Sunagawa, Shinichi; Zeller, Georg
  • Nature Methods, Vol. 10, Issue 9
  • DOI: 10.1038/nmeth.2575

Metagenomic species profiling using universal phylogenetic marker genes
journal, October 2013

  • Sunagawa, Shinichi; Mende, Daniel R.; Zeller, Georg
  • Nature Methods, Vol. 10, Issue 12
  • DOI: 10.1038/nmeth.2693

Multiple displacement amplification compromises quantitative analysis of metagenomes
journal, November 2010

  • Yilmaz, Suzan; Allgaier, Martin; Hugenholtz, Philip
  • Nature Methods, Vol. 7, Issue 12
  • DOI: 10.1038/nmeth1210-943

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota
journal, October 2016

Community genomics in microbial ecology and evolution
journal, June 2005

  • Allen, Eric E.; Banfield, Jillian F.
  • Nature Reviews Microbiology, Vol. 3, Issue 6
  • DOI: 10.1038/nrmicro1157

Genomic sequencing of uncultured microorganisms from single cells
journal, August 2012

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time
journal, May 2007

  • Stepanauskas, R.; Sieracki, M. E.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 21
  • DOI: 10.1073/pnas.0700496104

Comprehensive human genome amplification using multiple displacement amplification
journal, April 2002

  • Dean, F. B.; Hosono, S.; Fang, L.
  • Proceedings of the National Academy of Sciences, Vol. 99, Issue 8, p. 5261-5266
  • DOI: 10.1073/pnas.082089499

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
journal, March 2013

  • Campbell, J. H.; O'Donoghue, P.; Campbell, A. G.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 14, p. 5540-5545
  • DOI: 10.1073/pnas.1303090110

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
journal, June 2013

  • Swan, B. K.; Tupper, B.; Sczyrba, A.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 28
  • DOI: 10.1073/pnas.1304246110

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
journal, April 2012

Highlight: Tiniest of the Tiny--A New Low for Genome Size
journal, January 2013

An Expanded Genomic Representation of the Phylum Cyanobacteria
journal, May 2014

  • Soo, Rochelle M.; Skennerton, Connor T.; Sekiguchi, Yuji
  • Genome Biology and Evolution, Vol. 6, Issue 5
  • DOI: 10.1093/gbe/evu073

rrndb: the Ribosomal RNA Operon Copy Number Database
journal, January 2001

The bacterial species definition in the genomic era
journal, October 2006

  • Konstantinidis, Konstantinos T.; Ramette, Alban; Tiedje, James M.
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 361, Issue 1475
  • DOI: 10.1098/rstb.2006.1920

metaSPAdes: a new versatile metagenomic assembler
journal, March 2017

  • Nurk, Sergey; Meleshko, Dmitry; Korobeynikov, Anton
  • Genome Research, Vol. 27, Issue 5
  • DOI: 10.1101/gr.213959.116

The future is now: single-cell genomics of bacteria and archaea
journal, May 2013

Environmental Genome Shotgun Sequencing of the Sargasso Sea
journal, April 2004

Lineages of Acidophilic Archaea Revealed by Community Genomic Analysis
journal, December 2006

Genome Project Standards in a New Era of Sequencing
journal, October 2009

Genomic Features of a Bumble Bee Symbiont Reflect Its Host Environment
journal, April 2014

  • Martinson, Vincent G.; Magoc, Tanja; Koch, Hauke
  • Applied and Environmental Microbiology, Vol. 80, Issue 13
  • DOI: 10.1128/aem.00322-14

Genomic DNA Amplification from a Single Bacterium
journal, June 2005

Central Role of the Cell in Microbial Ecology
journal, November 2009

Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
journal, January 1995

The Uncultured Microbial Majority
journal, October 2003

Mechanism of chimera formation during the Multiple Displacement Amplification reaction
journal, January 2007

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
journal, August 2014

A simple, fast, and accurate method of phylogenomic inference
journal, January 2008

Community-wide analysis of microbial genome sequence signatures
journal, January 2009

  • Dick, Gregory J.; Andersson, Anders F.; Baker, Brett J.
  • Genome Biology, Vol. 10, Issue 8
  • DOI: 10.1186/gb-2009-10-8-r85

Ray Meta: scalable de novo metagenome assembly and profiling
journal, January 2012

  • Boisvert, Sébastien; Raymond, Frédéric; Godzaridis, Élénie
  • Genome Biology, Vol. 13, Issue 12
  • DOI: 10.1186/gb-2012-13-12-r122

acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
journal, December 2016

The Earth Microbiome project: successes and aspirations
journal, August 2014

Assembling the Marine Metagenome, One Cell at a Time
journal, April 2009

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets
journal, March 2011

Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
journal, October 2011

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods
journal, August 2014

ProDeGe: a computational protocol for fully automated decontamination of genomes
text, January 2016

  • James, Han,; L., Dangl, Jeff; Scott, Clingenpeel,
  • The University of North Carolina at Chapel Hill University Libraries
  • DOI: 10.17615/xvw7-9p10

Reconstructing each cell's genome within complex microbial communities—dream or reality?
journal, January 2015

Anvi’o: an advanced analysis and visualization platform for ‘omics data
journal, January 2015

  • Eren, A. Murat; Esen, Özcan C.; Quince, Christopher
  • PeerJ, Vol. 3
  • DOI: 10.7717/peerj.1319
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