In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation

Couradeau, Estelle; Felde, Vincent J. M. N. L.; Parkinson, Dilworth; Uteau, Daniel; Rochet, Alexis; Cuellar, Charlene; Winegar, Geoffrey; Peth, Stephan; Northen, Trent R.; Garcia-Pichel, Ferran

doi:10.3389/fenvs.2018.00065

Title: In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation

Authors:: Couradeau, Estelle; Felde, Vincent J. M. N. L.; Parkinson, Dilworth; Uteau, Daniel; Rochet, Alexis; Cuellar, Charlene; Winegar, Geoffrey; Peth, Stephan; Northen, Trent R.; Garcia-Pichel, Ferran

Publication Date:: 2018-06-28

Sponsoring Org.:: USDOE

OSTI Identifier:: 1457506

Grant/Contract Number:: AC02-05CH11231; 328530

Resource Type:: Published Article

Journal Name:: Frontiers in Environmental Science

Additional Journal Information:: Journal Name: Frontiers in Environmental Science Journal Volume: 6; Journal ID: ISSN 2296-665X

Publisher:: Frontiers Media SA

Country of Publication:: Switzerland

Language:: English

Citation Formats


                    Couradeau, Estelle, Felde, Vincent J. M. N. L., Parkinson, Dilworth, Uteau, Daniel, Rochet, Alexis, Cuellar, Charlene, Winegar, Geoffrey, Peth, Stephan, Northen, Trent R., and Garcia-Pichel, Ferran. In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation.  Switzerland: N. p., 2018. 
        Web.  doi:10.3389/fenvs.2018.00065.

Copy to clipboard


                    Couradeau, Estelle, Felde, Vincent J. M. N. L., Parkinson, Dilworth, Uteau, Daniel, Rochet, Alexis, Cuellar, Charlene, Winegar, Geoffrey, Peth, Stephan, Northen, Trent R., & Garcia-Pichel, Ferran. In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation.  Switzerland.  doi:https://doi.org/10.3389/fenvs.2018.00065

Copy to clipboard


                    Couradeau, Estelle, Felde, Vincent J. M. N. L., Parkinson, Dilworth, Uteau, Daniel, Rochet, Alexis, Cuellar, Charlene, Winegar, Geoffrey, Peth, Stephan, Northen, Trent R., and Garcia-Pichel, Ferran. Thu .  
        "In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation".  Switzerland.  doi:https://doi.org/10.3389/fenvs.2018.00065.

Copy to clipboard


                    
@article{osti_1457506,

  title        = {In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation},

  author       = {Couradeau, Estelle and Felde, Vincent J. M. N. L. and Parkinson, Dilworth and Uteau, Daniel and Rochet, Alexis and Cuellar, Charlene and Winegar, Geoffrey and Peth, Stephan and Northen, Trent R. and Garcia-Pichel, Ferran},

  abstractNote = {},

  doi          = {10.3389/fenvs.2018.00065},

  journal      = {Frontiers in Environmental Science},

  number       = ,

  volume       = 6,

  place        = {Switzerland},

  year         = {2018},

  month        = {6}

}

Copy to clipboard

Journal Article:

Free Publicly Available Full Text

Publisher's Version of Record
DOI: https://doi.org/10.3389/fenvs.2018.00065

Other availability

Search WorldCat to find libraries that may hold this journal

Citation Metrics:

Cited by: 2 works

Citation information provided by
Web of Science

Save / Share:

Export Metadata

Save to My Library

Works referenced in this record:

Influence of non-invasive X-ray computed tomography (XRCT) on the microbial community structure and function in soil
journal, May 2013

Fischer, Doreen; Pagenkemper, Sebastian; Nellesen, Jens
Journal of Microbiological Methods, Vol. 93, Issue 2
DOI: 10.1016/j.mimet.2013.02.009

Characterization and Biological Implications of Scytonemin, a Cyanobacterial Sheath Pigment1
journal, June 1991

Garcia-Pichel, Ferran; Castenholz, Richard W.
Journal of Phycology, Vol. 27, Issue 3
DOI: 10.1111/j.0022-3646.1991.00395.x

Assessment of physical and hydrological properties of biological soil crusts using X-ray microtomography and modeling
journal, January 2011

Menon, M.; Yuan, Q.; Jia, X.
Journal of Hydrology, Vol. 397, Issue 1-2
DOI: 10.1016/j.jhydrol.2010.11.021

Microbial extracellular polymeric substances improve water retention in dryland biological soil crusts
journal, January 2018

Adessi, Alessandra; Cruz de Carvalho, Ricardo; De Philippis, Roberto
Soil Biology and Biochemistry, Vol. 116
DOI: 10.1016/j.soilbio.2017.10.002

Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics
journal, September 2013

Baran, Richard; Ivanova, Natalia; Jose, Nick
Marine Drugs, Vol. 11, Issue 10
DOI: 10.3390/md11103617

Dryland photoautotrophic soil surface communities endangered by global change
journal, February 2018

Rodriguez-Caballero, Emilio; Belnap, Jayne; Büdel, Burkhard
Nature Geoscience, Vol. 11, Issue 3
DOI: 10.1038/s41561-018-0072-1

Bacteria increase arid-land soil surface temperature through the production of sunscreens
journal, January 2016

Couradeau, Estelle; Karaoz, Ulas; Lim, Hsiao Chien
Nature Communications, Vol. 7, Issue 1
DOI: 10.1038/ncomms10373

Localization of soil organic matter in soil aggregates using synchrotron-based X-ray microtomography
journal, November 2014

Peth, Stephan; Chenu, Claire; Leblond, Nelly
Soil Biology and Biochemistry, Vol. 78
DOI: 10.1016/j.soilbio.2014.07.024

Quantifying coupled deformation and water flow in the rhizosphere using X-ray microtomography and numerical simulations
journal, November 2013

Aravena, Jazmín E.; Berli, Markus; Ruiz, Siul
Plant and Soil, Vol. 376, Issue 1-2
DOI: 10.1007/s11104-013-1946-z

BoneJ: Free and extensible bone image analysis in ImageJ
journal, December 2010

Doube, Michael; Kłosowski, Michał M.; Arganda-Carreras, Ignacio
Bone, Vol. 47, Issue 6
DOI: 10.1016/j.bone.2010.08.023

Pore characteristics in biological soil crusts are independent of extracellular polymeric substances
journal, December 2016

Felde, Vincent J. M. N. L.; Rossi, Federico; Colesie, Claudia
Soil Biology and Biochemistry, Vol. 103
DOI: 10.1016/j.soilbio.2016.08.029

Alteration of rocks by endolithic organisms is one of the pathways for the beginning of soils on Earth
journal, February 2018

Mergelov, Nikita; Mueller, Carsten W.; Prater, Isabel
Scientific Reports, Vol. 8, Issue 1
DOI: 10.1038/s41598-018-21682-6

Three-dimensional distribution of water and air in soil pores: Comparison of two-phase two-relaxation-times lattice-Boltzmann and morphological model outputs with synchrotron X-ray computed tomography data
journal, October 2015

Pot, V.; Peth, S.; Monga, O.
Advances in Water Resources, Vol. 84
DOI: 10.1016/j.advwatres.2015.08.006

Water repellency and pore clogging at early successional stages of microbiotic crusts on inland dunes, Brandenburg, NE Germany
journal, January 2010

Fischer, Thomas; Veste, Maik; Wiehe, Wolfgang
CATENA, Vol. 80, Issue 1
DOI: 10.1016/j.catena.2009.08.009

What distinguishes cyanobacteria able to revive after desiccation from those that cannot: the genome aspect: Desiccation Resistance Genes in Cyanobacteria
journal, August 2016

Murik, Omer; Oren, Nadav; Shotland, Yoram
Environmental Microbiology, Vol. 19, Issue 2
DOI: 10.1111/1462-2920.13486

Three-Dimensional Quantification of Intra-Aggregate Pore-Space Features using Synchrotron-Radiation-Based Microtomography
journal, January 2008

Peth, S.; Horn, R.; Beckmann, F.
Soil Science Society of America Journal, Vol. 72, Issue 4
DOI: 10.2136/sssaj2007.0130

Terrestrial methane fluxes and Proterozoic climate
journal, December 2017

Zhao, Mingyu; Reinhard, Christopher T.; Planavsky, Noah
Geology, Vol. 46, Issue 2
DOI: 10.1130/G39502.1

Biofilm effect on soil hydraulic properties: Experimental investigation using soil-grown real biofilm: HYDRAULIC PROPERTIES OF BIOFILM AMENDED SOIL
journal, August 2016

Volk, Elazar; Iden, Sascha C.; Furman, Alex
Water Resources Research, Vol. 52, Issue 8
DOI: 10.1002/2016WR018866

Negligible effect of X-ray μ-CT scanning on archaea and bacteria in an agricultural soil
journal, May 2015

Schmidt, Hannes; Vetterlein, Doris; Köhne, John M.
Soil Biology and Biochemistry, Vol. 84
DOI: 10.1016/j.soilbio.2015.02.010

Organic matter from biological soil crusts induces the initial formation of sandy temperate soils
journal, November 2014

Dümig, A.; Veste, M.; Hagedorn, F.
CATENA, Vol. 122
DOI: 10.1016/j.catena.2014.06.011

Evaluation of soil aggregate microstructure and stability under wetting and drying cycles in two Ultisols using synchrotron-based X-ray micro-computed tomography
journal, June 2015

Ma, Renming; Cai, Chongfa; Li, Zhaoxia
Soil and Tillage Research, Vol. 149
DOI: 10.1016/j.still.2014.12.016

Modern Terrestrial Sedimentary Biostructures and Their Fossil Analogs in Mesoproterozoic Subaerial Deposits
journal, February 2014

Beraldi-Campesi, H.; Farmer, J. D.; Garcia-Pichel, F.
PALAIOS, Vol. 29, Issue 2
DOI: 10.2110/palo.2013.084

Cyanobacterial crust types, as strategies for survival in extreme habitats
journal, March 2009

Pócs, T.
Acta Botanica Hungarica, Vol. 51, Issue 1-2
DOI: 10.1556/ABot.51.2009.1-2.16

Complex role of the polymeric matrix in biological soil crusts
journal, October 2017

Rossi, Federico; Mugnai, Gianmarco; De Philippis, Roberto
Plant and Soil, Vol. 429, Issue 1-2
DOI: 10.1007/s11104-017-3441-4

Effects of Root-Induced Compaction on Rhizosphere Hydraulic Properties - X-ray Microtomography Imaging and Numerical Simulations
journal, January 2011

Aravena, Jazmín E.; Berli, Markus; Ghezzehei, Teamrat A.
Environmental Science & Technology, Vol. 45, Issue 2
DOI: 10.1021/es102566j

Hydrotaxis of Cyanobacteria in Desert Crusts
journal, November 2003

Pringault, O.; Garcia-Pichel, F.
Microbial Ecology, Vol. 47, Issue 4
DOI: 10.1007/s00248-002-0107-3

The biogenicity of modern terrestrial roll-up structures and its significance for ancient life on land: Roll-ups as biosignatures
journal, October 2010

Beraldi-Campesi, H.; Garcia-Pichel, F.
Geobiology, Vol. 9, Issue 1
DOI: 10.1111/j.1472-4669.2010.00258.x

Temperature Drives the Continental-Scale Distribution of Key Microbes in Topsoil Communities
journal, June 2013

Garcia-Pichel, Ferran; Loza, Virginia; Marusenko, Yevgeniy
Science, Vol. 340, Issue 6140
DOI: 10.1126/science.1236404

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
journal, June 2013

Rajeev, Lara; da Rocha, Ulisses Nunes; Klitgord, Niels
The ISME Journal, Vol. 7, Issue 11
DOI: 10.1038/ismej.2013.83

Extracellular Polymeric Substances Affecting Pore-Scale Hydrologic Conditions for Bacterial Activity in Unsaturated Soils
journal, January 2007

Or, Dani; Phutane, Sachin; Dechesne, Arnaud
Vadose Zone Journal, Vol. 6, Issue 2
DOI: 10.2136/vzj2006.0080

Microbial Nursery Production of High-Quality Biological Soil Crust Biomass for Restoration of Degraded Dryland Soils
journal, November 2016

Velasco Ayuso, Sergio; Giraldo Silva, Ana; Nelson, Corey
Applied and Environmental Microbiology, Vol. 83, Issue 3
DOI: 10.1128/AEM.02179-16

Nitrogen cycling in desert biological soil crusts across biogeographic regions in the Southwestern United States
journal, March 2011

Strauss, Sarah L.; Day, Thomas A.; Garcia-Pichel, Ferran
Biogeochemistry, Vol. 108, Issue 1-3
DOI: 10.1007/s10533-011-9587-x

Exometabolite niche partitioning among sympatric soil bacteria
journal, September 2015

Baran, Richard; Brodie, Eoin L.; Mayberry-Lewis, Jazmine
Nature Communications, Vol. 6, Issue 1
DOI: 10.1038/ncomms9289

TomoPy: a framework for the analysis of synchrotron tomographic data
journal, August 2014

Gürsoy, Dogˇa; De Carlo, Francesco; Xiao, Xianghui
Journal of Synchrotron Radiation, Vol. 21, Issue 5
DOI: 10.1107/S1600577514013939

Sphingomonas mucosissima sp. nov. and Sphingomonas desiccabilis sp. nov., from biological soil crusts in the Colorado Plateau, USA
journal, May 2007

Reddy, G. S. N.; Garcia-Pichel, F.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 5
DOI: 10.1099/ijs.0.64331-0

Microbial secreted exopolysaccharides affect the hydrological behavior of induced biological soil crusts in desert sandy soils
journal, January 2014

Colica, Giovanni; Li, Hua; Rossi, Federico
Soil Biology and Biochemistry, Vol. 68
DOI: 10.1016/j.soilbio.2013.09.017

Water Retention Curves of Biofilm-Affected Soils using Xanthan as an Analogue
journal, January 2012

Rosenzweig, Ravid; Shavit, Uri; Furman, Alex
Soil Science Society of America Journal, Vol. 76, Issue 1
DOI: 10.2136/sssaj2011.0155

Desiccation Tolerance of Prokaryotes: Application of Principles to Human Cells
journal, November 2005

Potts, M.
Integrative and Comparative Biology, Vol. 45, Issue 5
DOI: 10.1093/icb/45.5.800

Export of nitrogenous compounds due to incomplete cycling within biological soil crusts of arid lands
journal, March 2007

Johnson, Shannon L.; Neuer, Susanne; Garcia-Pichel, Ferran
Environmental Microbiology, Vol. 9, Issue 3
DOI: 10.1111/j.1462-2920.2006.01187.x

The role of the exopolysaccharides in enhancing hydraulic conductivity of biological soil crusts
journal, March 2012

Rossi, Federico; Potrafka, Ruth M.; Pichel, Ferran Garcia
Soil Biology and Biochemistry, Vol. 46
DOI: 10.1016/j.soilbio.2011.10.016

Capturing 3D Water Flow in Rooted Soil by Ultra-fast Neutron Tomography
journal, July 2017

Tötzke, Christian; Kardjilov, Nikolay; Manke, Ingo
Scientific Reports, Vol. 7, Issue 1
DOI: 10.1038/s41598-017-06046-w

Exposure to predicted precipitation patterns decreases population size and alters community structure of cyanobacteria in biological soil crusts from the Chihuahuan Desert: Changing rainfall effects on soil cyanobacteria
journal, December 2017

Fernandes, Vanessa M. C.; Machado de Lima, Náthali Maria; Roush, Daniel
Environmental Microbiology, Vol. 20, Issue 1
DOI: 10.1111/1462-2920.13983

Fiji: an open-source platform for biological-image analysis
journal, June 2012

Schindelin, Johannes; Arganda-Carreras, Ignacio; Frise, Erwin
Nature Methods, Vol. 9, Issue 7
DOI: 10.1038/nmeth.2019

Response and resilience of soil biocrust bacterial communities to chronic physical disturbance in arid shrublands
journal, November 2011

Kuske, Cheryl R.; Yeager, Chris M.; Johnson, Shannon
The ISME Journal, Vol. 6, Issue 4
DOI: 10.1038/ismej.2011.153

Effect of biological soil crusts on soil elemental concentrations: implications for biogeochemistry and as traceable biosignatures of ancient life on land
journal, June 2009

Beraldi-Campesi, H.; Hartnett, H. E.; Anbar, A.
Geobiology, Vol. 7, Issue 3
DOI: 10.1111/j.1472-4669.2009.00204.x

A Computational Approach to Edge Detection
journal, November 1986

Canny, John
IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. PAMI-8, Issue 6
DOI: 10.1109/TPAMI.1986.4767851

Topological characterization of pore space in soil — sample preparation and digital image-processing
journal, September 1996

Vogel, H. J.; Kretzschmar, A.
Geoderma, Vol. 73, Issue 1-2
DOI: 10.1016/0016-7061(96)00043-2

Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography
journal, November 2017

Voltolini, Marco; Taş, Neslihan; Wang, Shi
Geoderma, Vol. 305
DOI: 10.1016/j.geoderma.2017.06.005

X-ray micro-tomography at the Advanced Light Source
conference, October 2012

MacDowell, A. A.; Parkinson, D. Y.; Haboub, A.
SPIE Optical Engineering + Applications, SPIE Proceedings
DOI: 10.1117/12.930243

The Evolution of a Capacity to Build Supra-Cellular Ropes Enabled Filamentous Cyanobacteria to Colonize Highly Erodible Substrates
journal, November 2009

Garcia-Pichel, Ferran; Wojciechowski, Martin F.
PLoS ONE, Vol. 4, Issue 11
DOI: 10.1371/journal.pone.0007801

Marching cubes: A high resolution 3D surface construction algorithm
conference, January 1987

Lorensen, William E.; Cline, Harvey E.
Proceedings of the 14th annual conference on Computer graphics and interactive techniques - SIGGRAPH '87
DOI: 10.1145/37401.37422

A Threshold Selection Method from Gray-Level Histograms
journal, January 1979

Otsu, Nobuyuki
IEEE Transactions on Systems, Man, and Cybernetics, Vol. 9, Issue 1
DOI: 10.1109/TSMC.1979.4310076

Role of Cyanobacterial Exopolysaccharides in Phototrophic Biofilms and in Complex Microbial Mats
journal, April 2015

Rossi, Federico; De Philippis, Roberto
Life, Vol. 5, Issue 2
DOI: 10.3390/life5021218

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
journal, January 2018

Swenson, Tami L.; Karaoz, Ulas; Swenson, Joel M.
Nature Communications, Vol. 9, Issue 1
DOI: 10.1038/s41467-017-02356-9

Soil stabilization by a prokaryotic desert crust: Implications for Precambrian land biota
journal, September 1979

Campbell, S. E.
Origins of Life, Vol. 9, Issue 4
DOI: 10.1007/BF00926826

Similar Records in DOE PAGES and OSTI.GOV collections:

Three distinct clades of cultured heterocystous cyanobacteria constitute the dominant N2-fixing members of biological soil crusts of the Colorado Plateau, USA

Journal Article Chris M.,Yeager ; Jennifer L.,Kornosky ; Rachael E.,Morgan ; ... - FEMS Microbiology Ecology
DOI: https://doi.org/10.1111/j.1574-6941.2006.00265.x
In situ synchrotron X-ray tomography of 304 stainless steels undergoing chlorine-induced stress corrosion cracking

Journal Article Schoell, Ryan ; Xi, Li ; Zhao, Yuchen ; ... - Corrosion Science

To understand the mechanisms behind chlorine-induced stress corrosion cracking (CISCC) in 304 stainless steel, synchrotron high energy x-rays were used to perform in-situ x-ray microtomography on a pre-cracked sample under load in a corrosive simulated marine environment. The tomography scans showed the crack morphology evolving into a branching crack around the surface of the sample. Finite element analysis and stress intensity analysis are conducted to explain the observed crack branching.
DOI: https://doi.org/10.1016/j.corsci.2020.108687
Mass‐balance approach to quantify water distribution in soils based on X ‐ray computed tomography images

Journal Article Guber, Andrey ; Kutlu, Turgut ; Rivers, Mark ; ... - European Journal of Soil Science
DOI: https://doi.org/10.1111/ejss.13005
What can we learn from in-soil imaging of a live plant: X-ray Computed Tomography and 3D numerical simulation of root-soil system

Journal Article Yang, Xiaofan ; Varga, Tamas ; Liu, Chongxuan ; ... - Rhizosphere

Plant roots play a critical role in plant-soil-microbe interactions that occur in the rhizosphere, as well as processes with important implications to farming, forest management and climate change. X-ray computed tomography (XCT) has been proven to be an effective tool for non-invasive root imaging and analysis. A combination of XCT, open-source software, and our own code was used to noninvasively image a prairie dropseed (Sporobolus heterolepis) specimen, segment the root data to obtain a 3D image of the root structure at 31µm resolution, and extract quantitative information (root volume and surface area) from the 3D data, respectively. Based on themore »« less
DOI: https://doi.org/10.1016/j.rhisph.2017.04.017
What can we learn from in-soil imaging of a live plant: X-ray Computed Tomography and 3D numerical simulation of root-soil system

Journal Article Yang, Xiaofan ; Varga, Tamas ; Liu, Chongxuan ; ... - Rhizosphere

Plant roots play a critical role in plant-soil-microbe interactions that occur in the rhizosphere. X-ray Computed Tomography (XCT) has been proven to be an effective tool for non-invasive root imaging and analysis. A combination of XCT, open-source software, and in-house developed code was used to non-invasively image a prairie dropseed (Sporobolus heterolepis) specimen, segment the root data to obtain a 3D image of the root structure, and extract quantitative information from the 3D data, respectively. Based on the explicitly-resolved root structure, pore-scale computational fluid dynamics (CFD) simulations were applied to numerically investigate the root-soil-groundwater system. The plant root conductivity, soilmore »« less
Cited by 1
DOI: https://doi.org/10.1016/J.RHISPH.2017.04.017

Full Text Available

Similar Records

Title: In Situ X-Ray Tomography Imaging of Soil Water and Cyanobacteria From Biological Soil Crusts Undergoing Desiccation

Citation Formats

Influence of non-invasive X-ray computed tomography (XRCT) on the microbial community structure and function in soil journal, May 2013

Characterization and Biological Implications of Scytonemin, a Cyanobacterial Sheath Pigment1 journal, June 1991

Assessment of physical and hydrological properties of biological soil crusts using X-ray microtomography and modeling journal, January 2011

Microbial extracellular polymeric substances improve water retention in dryland biological soil crusts journal, January 2018

Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics journal, September 2013

Dryland photoautotrophic soil surface communities endangered by global change journal, February 2018

Bacteria increase arid-land soil surface temperature through the production of sunscreens journal, January 2016

Localization of soil organic matter in soil aggregates using synchrotron-based X-ray microtomography journal, November 2014

Quantifying coupled deformation and water flow in the rhizosphere using X-ray microtomography and numerical simulations journal, November 2013

BoneJ: Free and extensible bone image analysis in ImageJ journal, December 2010

Pore characteristics in biological soil crusts are independent of extracellular polymeric substances journal, December 2016

Alteration of rocks by endolithic organisms is one of the pathways for the beginning of soils on Earth journal, February 2018

Three-dimensional distribution of water and air in soil pores: Comparison of two-phase two-relaxation-times lattice-Boltzmann and morphological model outputs with synchrotron X-ray computed tomography data journal, October 2015

Water repellency and pore clogging at early successional stages of microbiotic crusts on inland dunes, Brandenburg, NE Germany journal, January 2010

What distinguishes cyanobacteria able to revive after desiccation from those that cannot: the genome aspect: Desiccation Resistance Genes in Cyanobacteria journal, August 2016

Three-Dimensional Quantification of Intra-Aggregate Pore-Space Features using Synchrotron-Radiation-Based Microtomography journal, January 2008

Terrestrial methane fluxes and Proterozoic climate journal, December 2017

Biofilm effect on soil hydraulic properties: Experimental investigation using soil-grown real biofilm: HYDRAULIC PROPERTIES OF BIOFILM AMENDED SOIL journal, August 2016

Negligible effect of X-ray μ-CT scanning on archaea and bacteria in an agricultural soil journal, May 2015

Organic matter from biological soil crusts induces the initial formation of sandy temperate soils journal, November 2014

Evaluation of soil aggregate microstructure and stability under wetting and drying cycles in two Ultisols using synchrotron-based X-ray micro-computed tomography journal, June 2015

Modern Terrestrial Sedimentary Biostructures and Their Fossil Analogs in Mesoproterozoic Subaerial Deposits journal, February 2014

Cyanobacterial crust types, as strategies for survival in extreme habitats journal, March 2009

Complex role of the polymeric matrix in biological soil crusts journal, October 2017

Effects of Root-Induced Compaction on Rhizosphere Hydraulic Properties - X-ray Microtomography Imaging and Numerical Simulations journal, January 2011

Hydrotaxis of Cyanobacteria in Desert Crusts journal, November 2003

The biogenicity of modern terrestrial roll-up structures and its significance for ancient life on land: Roll-ups as biosignatures journal, October 2010

Temperature Drives the Continental-Scale Distribution of Key Microbes in Topsoil Communities journal, June 2013

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust journal, June 2013

Extracellular Polymeric Substances Affecting Pore-Scale Hydrologic Conditions for Bacterial Activity in Unsaturated Soils journal, January 2007

Microbial Nursery Production of High-Quality Biological Soil Crust Biomass for Restoration of Degraded Dryland Soils journal, November 2016

Nitrogen cycling in desert biological soil crusts across biogeographic regions in the Southwestern United States journal, March 2011

Exometabolite niche partitioning among sympatric soil bacteria journal, September 2015

TomoPy: a framework for the analysis of synchrotron tomographic data journal, August 2014

Sphingomonas mucosissima sp. nov. and Sphingomonas desiccabilis sp. nov., from biological soil crusts in the Colorado Plateau, USA journal, May 2007

Microbial secreted exopolysaccharides affect the hydrological behavior of induced biological soil crusts in desert sandy soils journal, January 2014

Water Retention Curves of Biofilm-Affected Soils using Xanthan as an Analogue journal, January 2012

Desiccation Tolerance of Prokaryotes: Application of Principles to Human Cells journal, November 2005

Export of nitrogenous compounds due to incomplete cycling within biological soil crusts of arid lands journal, March 2007

The role of the exopolysaccharides in enhancing hydraulic conductivity of biological soil crusts journal, March 2012

Capturing 3D Water Flow in Rooted Soil by Ultra-fast Neutron Tomography journal, July 2017

Exposure to predicted precipitation patterns decreases population size and alters community structure of cyanobacteria in biological soil crusts from the Chihuahuan Desert: Changing rainfall effects on soil cyanobacteria journal, December 2017

Fiji: an open-source platform for biological-image analysis journal, June 2012

Response and resilience of soil biocrust bacterial communities to chronic physical disturbance in arid shrublands journal, November 2011

Effect of biological soil crusts on soil elemental concentrations: implications for biogeochemistry and as traceable biosignatures of ancient life on land journal, June 2009

A Computational Approach to Edge Detection journal, November 1986

Topological characterization of pore space in soil — sample preparation and digital image-processing journal, September 1996

Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography journal, November 2017

X-ray micro-tomography at the Advanced Light Source conference, October 2012

The Evolution of a Capacity to Build Supra-Cellular Ropes Enabled Filamentous Cyanobacteria to Colonize Highly Erodible Substrates journal, November 2009

Marching cubes: A high resolution 3D surface construction algorithm conference, January 1987

A Threshold Selection Method from Gray-Level Histograms journal, January 1979

Role of Cyanobacterial Exopolysaccharides in Phototrophic Biofilms and in Complex Microbial Mats journal, April 2015

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics journal, January 2018

Soil stabilization by a prokaryotic desert crust: Implications for Precambrian land biota journal, September 1979

Influence of non-invasive X-ray computed tomography (XRCT) on the microbial community structure and function in soil
journal, May 2013

Characterization and Biological Implications of Scytonemin, a Cyanobacterial Sheath Pigment1
journal, June 1991

Assessment of physical and hydrological properties of biological soil crusts using X-ray microtomography and modeling
journal, January 2011

Microbial extracellular polymeric substances improve water retention in dryland biological soil crusts
journal, January 2018

Functional Genomics of Novel Secondary Metabolites from Diverse Cyanobacteria Using Untargeted Metabolomics
journal, September 2013

Dryland photoautotrophic soil surface communities endangered by global change
journal, February 2018

Bacteria increase arid-land soil surface temperature through the production of sunscreens
journal, January 2016

Localization of soil organic matter in soil aggregates using synchrotron-based X-ray microtomography
journal, November 2014

Quantifying coupled deformation and water flow in the rhizosphere using X-ray microtomography and numerical simulations
journal, November 2013

BoneJ: Free and extensible bone image analysis in ImageJ
journal, December 2010

Pore characteristics in biological soil crusts are independent of extracellular polymeric substances
journal, December 2016

Alteration of rocks by endolithic organisms is one of the pathways for the beginning of soils on Earth
journal, February 2018

Three-dimensional distribution of water and air in soil pores: Comparison of two-phase two-relaxation-times lattice-Boltzmann and morphological model outputs with synchrotron X-ray computed tomography data
journal, October 2015

Water repellency and pore clogging at early successional stages of microbiotic crusts on inland dunes, Brandenburg, NE Germany
journal, January 2010

What distinguishes cyanobacteria able to revive after desiccation from those that cannot: the genome aspect: Desiccation Resistance Genes in Cyanobacteria
journal, August 2016

Three-Dimensional Quantification of Intra-Aggregate Pore-Space Features using Synchrotron-Radiation-Based Microtomography
journal, January 2008

Terrestrial methane fluxes and Proterozoic climate
journal, December 2017

Biofilm effect on soil hydraulic properties: Experimental investigation using soil-grown real biofilm: HYDRAULIC PROPERTIES OF BIOFILM AMENDED SOIL
journal, August 2016

Negligible effect of X-ray μ-CT scanning on archaea and bacteria in an agricultural soil
journal, May 2015

Organic matter from biological soil crusts induces the initial formation of sandy temperate soils
journal, November 2014

Evaluation of soil aggregate microstructure and stability under wetting and drying cycles in two Ultisols using synchrotron-based X-ray micro-computed tomography
journal, June 2015

Modern Terrestrial Sedimentary Biostructures and Their Fossil Analogs in Mesoproterozoic Subaerial Deposits
journal, February 2014

Cyanobacterial crust types, as strategies for survival in extreme habitats
journal, March 2009

Complex role of the polymeric matrix in biological soil crusts
journal, October 2017

Effects of Root-Induced Compaction on Rhizosphere Hydraulic Properties - X-ray Microtomography Imaging and Numerical Simulations
journal, January 2011

Hydrotaxis of Cyanobacteria in Desert Crusts
journal, November 2003

The biogenicity of modern terrestrial roll-up structures and its significance for ancient life on land: Roll-ups as biosignatures
journal, October 2010

Temperature Drives the Continental-Scale Distribution of Key Microbes in Topsoil Communities
journal, June 2013

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
journal, June 2013

Extracellular Polymeric Substances Affecting Pore-Scale Hydrologic Conditions for Bacterial Activity in Unsaturated Soils
journal, January 2007

Microbial Nursery Production of High-Quality Biological Soil Crust Biomass for Restoration of Degraded Dryland Soils
journal, November 2016

Nitrogen cycling in desert biological soil crusts across biogeographic regions in the Southwestern United States
journal, March 2011

Exometabolite niche partitioning among sympatric soil bacteria
journal, September 2015

TomoPy: a framework for the analysis of synchrotron tomographic data
journal, August 2014

Sphingomonas mucosissima sp. nov. and Sphingomonas desiccabilis sp. nov., from biological soil crusts in the Colorado Plateau, USA
journal, May 2007

Microbial secreted exopolysaccharides affect the hydrological behavior of induced biological soil crusts in desert sandy soils
journal, January 2014

Water Retention Curves of Biofilm-Affected Soils using Xanthan as an Analogue
journal, January 2012

Desiccation Tolerance of Prokaryotes: Application of Principles to Human Cells
journal, November 2005

Export of nitrogenous compounds due to incomplete cycling within biological soil crusts of arid lands
journal, March 2007

The role of the exopolysaccharides in enhancing hydraulic conductivity of biological soil crusts
journal, March 2012

Capturing 3D Water Flow in Rooted Soil by Ultra-fast Neutron Tomography
journal, July 2017

Exposure to predicted precipitation patterns decreases population size and alters community structure of cyanobacteria in biological soil crusts from the Chihuahuan Desert: Changing rainfall effects on soil cyanobacteria
journal, December 2017

Fiji: an open-source platform for biological-image analysis
journal, June 2012

Response and resilience of soil biocrust bacterial communities to chronic physical disturbance in arid shrublands
journal, November 2011

Effect of biological soil crusts on soil elemental concentrations: implications for biogeochemistry and as traceable biosignatures of ancient life on land
journal, June 2009

A Computational Approach to Edge Detection
journal, November 1986

Topological characterization of pore space in soil — sample preparation and digital image-processing
journal, September 1996

Quantitative characterization of soil micro-aggregates: New opportunities from sub-micron resolution synchrotron X-ray microtomography
journal, November 2017

X-ray micro-tomography at the Advanced Light Source
conference, October 2012

The Evolution of a Capacity to Build Supra-Cellular Ropes Enabled Filamentous Cyanobacteria to Colonize Highly Erodible Substrates
journal, November 2009

Marching cubes: A high resolution 3D surface construction algorithm
conference, January 1987

A Threshold Selection Method from Gray-Level Histograms
journal, January 1979

Role of Cyanobacterial Exopolysaccharides in Phototrophic Biofilms and in Complex Microbial Mats
journal, April 2015

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
journal, January 2018

Soil stabilization by a prokaryotic desert crust: Implications for Precambrian land biota
journal, September 1979