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Title: Complete Genome Sequence of Alkaliphilus metalliredigens QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-contaminated Leachate Ponds

Abstract

Alkaliphilus metalliredigensstrain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylumFirmicutes. QYMF was isolated from alkaline borax leachate ponds. The genome sequence will help elucidate the role of metal-reducing microorganisms under alkaline environments, a capability that is not commonly observed in metal respiring-microorganisms.

Authors:
 [1];  [2];  [2];  [3];  [2];  [4];  [2];  [2];  [4];  [5];  [2];  [2];  [4];  [2];  [4];  [4];  [2];  [6];  [6];  [6] more »;  [2];  [2];  [7];  [8];  [2];  [9] « less
+ Show Author Affiliations
  1. Montana State Univ., Bozeman, MT (United States). Center for Biofilm Engineering
  2. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); St. Petersburg State Univ. (Russian Federation). Theodosius Dobzhansky Center for Genome Bioinformatics; St. Petersburg Academic Univ. (Russian Federation). Algorithmic Biology Lab.
  4. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Synthetic Genomics, La Jolla, CA (United States)
  6. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  7. East China Normal Univ. (ECNU), Shanghai (China). State Key Lab. of Estuarine and Coastal Research
  8. Univ. of Oklahoma, Norman, OK (United States). Dept. of Microbiology and Plant Biology
  9. Montana State Univ., Bozeman, MT (United States). Dept. of Microbiology and Immunology
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1337034
Alternate Identifier(s):
OSTI ID: 1456928
Grant/Contract Number:  
AC05-00OR22725; W-7405-Eng-48; AC03-76SF00098; W-7405-ENG-36; AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 4; Journal Issue: 6; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Alkaliphilus metalliredigens

Citation Formats

Hwang, C., Copeland, A., Lucas, Susan, Lapidus, Alla L., Barry, Kerrie, Detter, J. C., Glavina Del Rio, Tijana, Hammon, Nancy, Israni, Sanjay, Dalin, Eileen, Tice, Hope, Pitluck, Samual, Chertkov, Olga, Brettin, Thomas S., Bruce, David, Han, Cliff, Schmutz, Jeremy, Larimer, Frank W., Land, Miriam L., Hauser, Loren John, Kyrpides, Nikos C., Mikhailova, Natalia, Ye, Qi, Zhou, Jizhong, Richardson, P. M., and Fields, Matthew Wayne. Complete Genome Sequence of Alkaliphilus metalliredigens QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-contaminated Leachate Ponds. United States: N. p., 2016. Web. doi:10.1128/genomeA.01226-16.
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Hwang, C., Copeland, A., Lucas, Susan, Lapidus, Alla L., Barry, Kerrie, Detter, J. C., Glavina Del Rio, Tijana, Hammon, Nancy, Israni, Sanjay, Dalin, Eileen, Tice, Hope, Pitluck, Samual, Chertkov, Olga, Brettin, Thomas S., Bruce, David, Han, Cliff, Schmutz, Jeremy, Larimer, Frank W., Land, Miriam L., Hauser, Loren John, Kyrpides, Nikos C., Mikhailova, Natalia, Ye, Qi, Zhou, Jizhong, Richardson, P. M., & Fields, Matthew Wayne. Complete Genome Sequence of Alkaliphilus metalliredigens QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-contaminated Leachate Ponds. United States. https://doi.org/10.1128/genomeA.01226-16
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Hwang, C., Copeland, A., Lucas, Susan, Lapidus, Alla L., Barry, Kerrie, Detter, J. C., Glavina Del Rio, Tijana, Hammon, Nancy, Israni, Sanjay, Dalin, Eileen, Tice, Hope, Pitluck, Samual, Chertkov, Olga, Brettin, Thomas S., Bruce, David, Han, Cliff, Schmutz, Jeremy, Larimer, Frank W., Land, Miriam L., Hauser, Loren John, Kyrpides, Nikos C., Mikhailova, Natalia, Ye, Qi, Zhou, Jizhong, Richardson, P. M., and Fields, Matthew Wayne. Thu . "Complete Genome Sequence of Alkaliphilus metalliredigens QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-contaminated Leachate Ponds". United States. https://doi.org/10.1128/genomeA.01226-16. https://www.osti.gov/servlets/purl/1337034.
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@article{osti_1337034,
title = {Complete Genome Sequence of Alkaliphilus metalliredigens QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-contaminated Leachate Ponds},
author = {Hwang, C. and Copeland, A. and Lucas, Susan and Lapidus, Alla L. and Barry, Kerrie and Detter, J. C. and Glavina Del Rio, Tijana and Hammon, Nancy and Israni, Sanjay and Dalin, Eileen and Tice, Hope and Pitluck, Samual and Chertkov, Olga and Brettin, Thomas S. and Bruce, David and Han, Cliff and Schmutz, Jeremy and Larimer, Frank W. and Land, Miriam L. and Hauser, Loren John and Kyrpides, Nikos C. and Mikhailova, Natalia and Ye, Qi and Zhou, Jizhong and Richardson, P. M. and Fields, Matthew Wayne},
abstractNote = {Alkaliphilus metalliredigensstrain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylumFirmicutes. QYMF was isolated from alkaline borax leachate ponds. The genome sequence will help elucidate the role of metal-reducing microorganisms under alkaline environments, a capability that is not commonly observed in metal respiring-microorganisms.},
doi = {10.1128/genomeA.01226-16},
journal = {Genome Announcements},
number = 6,
volume = 4,
place = {United States},
year = {Thu Nov 03 00:00:00 EDT 2016},
month = {Thu Nov 03 00:00:00 EDT 2016}
}
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Journal Article:
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Publisher's Version of Record
https://doi.org/10.1128/genomeA.01226-16
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Expressing ScACR3 in Rice Enhanced Arsenite Efflux and Reduced Arsenic Accumulation in Rice Grains
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Properties of Arsenite Efflux Permeases (Acr3) from Alkaliphilus metalliredigens and Corynebacterium glutamicum
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    Understanding and Designing the Strategies for the Microbe-Mediated Remediation of Environmental Contaminants Using Omics Approaches
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