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Title: Guanidinium Group Remains Protonated in a Strongly Basic Arginine Solution

Abstract

Knowledge of the acid dissociation constant of an amino acid has very important ramifications in the biochemistry of proteins and lipid bilayers in aqueous environments because charge and proton transfer depend on its value. The acid dissociation constant for the guanidinium group in arginine has historically been posited as 12.5, but there is substantial variation in published values over the years. Recent experiments suggest that the dissociation constant for arginine is much higher than 12.5, which explains why the arginine guanidinium group retains its positive charge under all physiological conditions. Here, we use X-ray photoelectron spectroscopy to study unsupported, aqueous arginine nanoparticles. By varying the pH of the constituent solution, we provide evidence that the guanidinium group is protonated even in a very basic solution. By analyzing the energy shifts in the C and N X-ray photoelectron spectra, we establish a molecular level picture of how charge and proton transport in aqueous solutions of arginine occur.

Authors:
ORCiD logo [1];  [2]; ORCiD logo [1]; ORCiD logo [1]
  1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Chemical Sciences Division
  2. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Chemical Sciences Division; Univ. of California, Berkeley, CA (United States). Dept. of Chemistry
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences, and Biosciences Division; National Science Foundation (NSF)
OSTI Identifier:
1454493
Alternate Identifier(s):
OSTI ID: 1401071
Grant/Contract Number:  
AC02-05CH11231; DGE‐1106400
Resource Type:
Accepted Manuscript
Journal Name:
ChemPhysChem
Additional Journal Information:
Journal Volume: 18; Journal Issue: 12; Related Information: © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim; Journal ID: ISSN 1439-4235
Publisher:
ChemPubSoc Europe
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; 59 BASIC BIOLOGICAL SCIENCES; acid dissociation constant; amino acids; nanoparticles; photoelectron spectroscopy; proton transport

Citation Formats

Xu, Bo, Jacobs, Michael I., Kostko, Oleg, and Ahmed, Musahid. Guanidinium Group Remains Protonated in a Strongly Basic Arginine Solution. United States: N. p., 2017. Web. doi:10.1002/cphc.201700197.
Xu, Bo, Jacobs, Michael I., Kostko, Oleg, & Ahmed, Musahid. Guanidinium Group Remains Protonated in a Strongly Basic Arginine Solution. United States. https://doi.org/10.1002/cphc.201700197
Xu, Bo, Jacobs, Michael I., Kostko, Oleg, and Ahmed, Musahid. Tue . "Guanidinium Group Remains Protonated in a Strongly Basic Arginine Solution". United States. https://doi.org/10.1002/cphc.201700197. https://www.osti.gov/servlets/purl/1454493.
@article{osti_1454493,
title = {Guanidinium Group Remains Protonated in a Strongly Basic Arginine Solution},
author = {Xu, Bo and Jacobs, Michael I. and Kostko, Oleg and Ahmed, Musahid},
abstractNote = {Knowledge of the acid dissociation constant of an amino acid has very important ramifications in the biochemistry of proteins and lipid bilayers in aqueous environments because charge and proton transfer depend on its value. The acid dissociation constant for the guanidinium group in arginine has historically been posited as 12.5, but there is substantial variation in published values over the years. Recent experiments suggest that the dissociation constant for arginine is much higher than 12.5, which explains why the arginine guanidinium group retains its positive charge under all physiological conditions. Here, we use X-ray photoelectron spectroscopy to study unsupported, aqueous arginine nanoparticles. By varying the pH of the constituent solution, we provide evidence that the guanidinium group is protonated even in a very basic solution. By analyzing the energy shifts in the C and N X-ray photoelectron spectra, we establish a molecular level picture of how charge and proton transport in aqueous solutions of arginine occur.},
doi = {10.1002/cphc.201700197},
journal = {ChemPhysChem},
number = 12,
volume = 18,
place = {United States},
year = {Tue May 16 00:00:00 EDT 2017},
month = {Tue May 16 00:00:00 EDT 2017}
}

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Works referenced in this record:

Investigation of the Amino Acids Glycine, Proline, and Methionine by Photoemission Spectroscopy
journal, November 2007

  • Plekan, Oksana; Feyer, Vitaliy; Richter, Robert
  • The Journal of Physical Chemistry A, Vol. 111, Issue 43
  • DOI: 10.1021/jp075384v

Local Electronic Structure of Functional Groups in Glycine As Anion, Zwitterion, and Cation in Aqueous Solution
journal, December 2009

  • Gråsjö, Johan; Andersson, Egil; Forsberg, Johan
  • The Journal of Physical Chemistry B, Vol. 113, Issue 49
  • DOI: 10.1021/jp905998x

Does Arginine Remain Protonated in the Lipid Membrane? Insights from Microscopic pKa Calculations
journal, April 2008


An X-ray absorption study of glycine, methionine and proline
journal, March 2007

  • Plekan, O.; Feyer, V.; Richter, R.
  • Journal of Electron Spectroscopy and Related Phenomena, Vol. 155, Issue 1-3
  • DOI: 10.1016/j.elspec.2006.11.004

Is Arginine a Zwitterion in the Gas Phase?
journal, December 1997

  • Price, William D.; Jockusch, Rebecca A.; Williams, Evan R.
  • Journal of the American Chemical Society, Vol. 119, Issue 49
  • DOI: 10.1021/ja9711627

L -Arginine hydrochloride increases the solubility of folded and unfolded recombinant plasminogen activator rPA : Equilibrium Solubility of rPA
journal, July 2010

  • Tischer, Alexander; Lilie, Hauke; Rudolph, Rainer
  • Protein Science, Vol. 19, Issue 9
  • DOI: 10.1002/pro.465

Effect of Metal Ions (Li + , Na + , K + , Mg 2+ , Ca 2+ , Ni 2+ , Cu 2+ , and Zn 2+ ) and Water Coordination on the Structure of Glycine and Zwitterionic Glycine
journal, February 2006

  • Remko, Milan; Rode, Bernd Michael
  • The Journal of Physical Chemistry A, Vol. 110, Issue 5
  • DOI: 10.1021/jp054119b

Arginine side chain interactions and the role of arginine as a gating charge carrier in voltage sensitive ion channels
journal, February 2016

  • Armstrong, Craig T.; Mason, Philip E.; Anderson, J. L. Ross
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep21759

Innershell Absorption Spectroscopy of Amino Acids
journal, April 2002

  • Kaznacheyev, K.; Osanna, A.; Jacobsen, C.
  • The Journal of Physical Chemistry A, Vol. 106, Issue 13
  • DOI: 10.1021/jp013385w

The hydration structure of guanidinium and thiocyanate ions: Implications for protein stability in aqueous solution
journal, April 2003

  • Mason, P. E.; Neilson, G. W.; Dempsey, C. E.
  • Proceedings of the National Academy of Sciences, Vol. 100, Issue 8
  • DOI: 10.1073/pnas.0735920100

Arginine: Its p K a value revisited : p
journal, March 2015

  • Fitch, Carolyn A.; Platzer, Gerald; Okon, Mark
  • Protein Science, Vol. 24, Issue 5
  • DOI: 10.1002/pro.2647

Ultrafast Proton Dynamics in Aqueous Amino Acid Solutions Studied by Resonant Inelastic Soft X-ray Scattering
journal, November 2012

  • Blum, M.; Odelius, M.; Weinhardt, L.
  • The Journal of Physical Chemistry B, Vol. 116, Issue 46
  • DOI: 10.1021/jp302958j

The Bonding and Electronic Structure Changes upon Adsorption of Important Functional Groups:  Glycine on Copper
journal, December 2000

  • Hasselström, J.; Karis, O.; Nyberg, M.
  • The Journal of Physical Chemistry B, Vol. 104, Issue 48
  • DOI: 10.1021/jp000986z

XPS studies of amino acids adsorbed on titanium dioxide surfaces
journal, January 1991

  • Schmidt, Martin; Steinemann, Samuel G.
  • Fresenius' Journal of Analytical Chemistry, Vol. 341, Issue 5-6
  • DOI: 10.1007/BF00321947

Temperature Dependence of the Dissociation Constants of Several Amino Acids
journal, March 2008

  • Nagai, Hidetada; Kuwabara, Ko; Carta, Giorgio
  • Journal of Chemical & Engineering Data, Vol. 53, Issue 3
  • DOI: 10.1021/je700067a

pH Dependence of the Electronic Structure of Glycine
journal, March 2005

  • Messer, B. M.; Cappa, C. D.; Smith, J. D.
  • The Journal of Physical Chemistry B, Vol. 109, Issue 11
  • DOI: 10.1021/jp0457592

The effects of arginine on refolding of aggregated proteins: not facilitate refolding, but suppress aggregation
journal, April 2003


Solubilization of active green fluorescent protein from insoluble particles by guanidine and arginine
journal, December 2003

  • Tsumoto, Kouhei; Umetsu, Mitsuo; Kumagai, Izumi
  • Biochemical and Biophysical Research Communications, Vol. 312, Issue 4
  • DOI: 10.1016/j.bbrc.2003.11.055

pH-Induced Protonation of Lysine in Aqueous Solution Causes Chemical Shifts in X-ray Photoelectron Spectroscopy
journal, November 2007

  • Nolting, Dirk; Aziz, Emad F.; Ottosson, Niklas
  • Journal of the American Chemical Society, Vol. 129, Issue 45
  • DOI: 10.1021/ja072971l

Pseudoequivalent Nitrogen Atoms in Aqueous Imidazole Distinguished by Chemical Shifts in Photoelectron Spectroscopy
journal, July 2008

  • Nolting, Dirk; Ottosson, Niklas; Faubel, Manfred
  • Journal of the American Chemical Society, Vol. 130, Issue 26
  • DOI: 10.1021/ja8022384

Core-photoelectron binding energies of gaseous glycine: correlation with its proton affinity and gas-phase acidity
journal, April 1988

  • Slaughter, A. R.; Banna, M. S.
  • The Journal of Physical Chemistry, Vol. 92, Issue 8
  • DOI: 10.1021/j100319a017

Low-Energy Tautomers and Conformers of Neutral and Protonated Arginine
journal, November 2001

  • Rak, Janusz; Skurski, Piotr; Simons, Jack
  • Journal of the American Chemical Society, Vol. 123, Issue 47
  • DOI: 10.1021/ja011357l

Oxygen K -edge X-ray absorption near edge structures (XANES) of sublimated films of amino acids
journal, March 2001

  • Tanaka, Masahito; Nakagawa, Kazumichi; Koketsu, Toshiyuki
  • Journal of Synchrotron Radiation, Vol. 8, Issue 2
  • DOI: 10.1107/S0909049500017829

NEXAFS Spectroscopy of Homopolypeptides at All Relevant Absorption Edges:  Polyisoleucine, Polytyrosine, and Polyhistidine
journal, August 2007

  • Zubavichus, Yan; Shaporenko, Andrey; Grunze, Michael
  • The Journal of Physical Chemistry B, Vol. 111, Issue 33
  • DOI: 10.1021/jp073922y

Arginine residues at internal positions in a protein are always charged
journal, November 2011

  • Harms, M. J.; Schlessman, J. L.; Sue, G. R.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 47
  • DOI: 10.1073/pnas.1104808108

Carbon edge XANES spectroscopy of amino acids and peptides
journal, July 1997

  • Boese, J.; Osanna, A.; Jacobsen, C.
  • Journal of Electron Spectroscopy and Related Phenomena, Vol. 85, Issue 1-2
  • DOI: 10.1016/S0368-2048(97)00032-7

Probing the Heterogeneous Ozonolysis of Squalene Nanoparticles by Photoemission
journal, October 2016

  • Jacobs, Michael I.; Xu, Bo; Kostko, Oleg
  • The Journal of Physical Chemistry A, Vol. 120, Issue 43
  • DOI: 10.1021/acs.jpca.6b09061

Surface-Altered Protonation Studied by Photoelectron Spectroscopy and Reactive Dynamics Simulations
journal, February 2015

  • da Silva, Áderson Miranda; Mocellin, Alexandra; Monti, Susanna
  • The Journal of Physical Chemistry Letters, Vol. 6, Issue 5
  • DOI: 10.1021/acs.jpclett.5b00131

Factors Affecting the Viscosity in High Concentration Solutions of Different Monoclonal Antibodies
journal, December 2010

  • Yadav, Sandeep; Shire, Steven J.; Kalonia, Devendra S.
  • Journal of Pharmaceutical Sciences, Vol. 99, Issue 12
  • DOI: 10.1002/jps.22190

Precision neutron diffraction structure determination of protein and nucleic acid components. III. The crystal and molecular structure of the amino acid α-glycine
journal, June 1972

  • Jönsson, P. G.; Kvick, Å ;.
  • Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry, Vol. 28, Issue 6
  • DOI: 10.1107/S0567740872005096

Nondenaturing solubilization of β2 microglobulin from inclusion bodies by l-arginine
journal, March 2005

  • Umetsu, Mitsuo; Tsumoto, Kouhei; Nitta, Shigeki
  • Biochemical and Biophysical Research Communications, Vol. 328, Issue 1
  • DOI: 10.1016/j.bbrc.2004.12.156

Is Arginine Charged in a Membrane?
journal, January 2008


Local Hydration Environments of Amino Acids and Dipeptides Studied by X-ray Spectroscopy of Liquid Microjets
journal, November 2005

  • Messer, B. M.; Cappa, C. D.; Smith, J. D.
  • The Journal of Physical Chemistry B, Vol. 109, Issue 46
  • DOI: 10.1021/jp053802v

An analysis of the NEXAFS spectra of a molecular crystal: α-glycine
journal, July 2010

  • Schwartz, Craig P.; Saykally, Richard J.; Prendergast, David
  • The Journal of Chemical Physics, Vol. 133, Issue 4
  • DOI: 10.1063/1.3462243

A Simple Method for Improving Protein Solubility and Long-Term Stability
journal, July 2004

  • Golovanov, Alexander P.; Hautbergue, Guillaume M.; Wilson, Stuart A.
  • Journal of the American Chemical Society, Vol. 126, Issue 29
  • DOI: 10.1021/ja049297h

Molecular Basis of the Antioxidant Capability of Glutathione Unraveled via Aerosol VUV Photoelectron Spectroscopy
journal, September 2016

  • Chang, Po-Chiao; Yu, Youqing; Wu, Zhong-Hang
  • The Journal of Physical Chemistry B, Vol. 120, Issue 39
  • DOI: 10.1021/acs.jpcb.6b04631

Photoemission from Liquid Aqueous Solutions
journal, April 2006

  • Winter, Bernd; Faubel, Manfred
  • Chemical Reviews, Vol. 106, Issue 4
  • DOI: 10.1021/cr040381p

“Building Block Picture” of the Electronic Structure of Aqueous Cysteine Derived from Resonant Inelastic Soft X-ray Scattering
journal, November 2014

  • Meyer, F.; Blum, M.; Benkert, A.
  • The Journal of Physical Chemistry B, Vol. 118, Issue 46
  • DOI: 10.1021/jp5089417

Microscopic acid—base equilibria of arginine
journal, December 1991


Investigation of the Gas-Phase Amino Acid Alanine by Synchrotron Radiation Photoelectron Spectroscopy
journal, January 2003

  • Powis, Ivan; Rennie, Emma E.; Hergenhahn, Uwe
  • The Journal of Physical Chemistry A, Vol. 107, Issue 1
  • DOI: 10.1021/jp0266345

Quantitative analysis of complex amino acids and RGD peptides by X-ray photoelectron spectroscopy (XPS): Quantitative XPS analysis of amino acids and RGD peptides
journal, April 2013

  • Stevens, Joanna S.; de Luca, Alba C.; Pelendritis, Michalis
  • Surface and Interface Analysis, Vol. 45, Issue 8
  • DOI: 10.1002/sia.5261

A molecular beam study of the evaporation of water from a liquid jet
journal, June 1988

  • Faubel, M.; Schlemmer, S.; Toennies, J. P.
  • Zeitschrift f�r Physik D Atoms, Molecules and Clusters, Vol. 10, Issue 2-3
  • DOI: 10.1007/BF01384861

On the Origins of Core−Electron Chemical Shifts of Small Biomolecules in Aqueous Solution: Insights from Photoemission and ab Initio Calculations of Glycine aq
journal, March 2011

  • Ottosson, Niklas; Børve, Knut J.; Spångberg, Daniel
  • Journal of the American Chemical Society, Vol. 133, Issue 9
  • DOI: 10.1021/ja110321q

Indispensable structure of solution additives to prevent inactivation of lysozyme for heating and refolding
journal, September 2009

  • Matsuoka, Tsuneyoshi; Hamada, Hiroyuki; Matsumoto, Koji
  • Biotechnology Progress, Vol. 25, Issue 5
  • DOI: 10.1002/btpr.245

The complete microspeciation of arginine and citrulline
journal, April 2011

  • Orgován, Gábor; Noszál, Béla
  • Journal of Pharmaceutical and Biomedical Analysis, Vol. 54, Issue 5
  • DOI: 10.1016/j.jpba.2010.11.023

Photoemission from Liquid Aqueous Solutions
journal, June 2006


NEXAFS Spectroscopy of Homopolypeptides at All Relevant Absorption Edges:  Polyisoleucine, Polytyrosine, and Polyhistidine
journal, October 2007

  • Zubavichus, Yan; Shaporenko, Andrey; Grunze, Michael
  • The Journal of Physical Chemistry B, Vol. 111, Issue 40
  • DOI: 10.1021/jp079554f

Works referencing / citing this record:

Coupled-cluster based approach for core-level states in condensed phase: Theory and application to different protonated forms of aqueous glycine
journal, July 2017

  • Sadybekov, Arman; Krylov, Anna I.
  • The Journal of Chemical Physics, Vol. 147, Issue 1
  • DOI: 10.1063/1.4990564