Tools for model-building with cryo-EM maps
Abstract
There are new tools available to you in Phenix for interpreting cryo-EM maps. You can automatically sharpen (or blur) a map with phenix.auto_sharpen and you can segment a map with phenix.segment_and_split_map. If you have overlapping partial models for a map, you can merge them with phenix.combine_models. If you have a protein-RNA complex and protein chains have been accidentally built in the RNA region, you can try to remove them with phenix.remove_poor_fragments. You can put these together and automatically sharpen, segment and build a map with phenix.map_to_model.
- Authors:
-
- Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
- Publication Date:
- Research Org.:
- Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
- Sponsoring Org.:
- USDOE; National Institutes of Health (NIH)
- OSTI Identifier:
- 1441347
- Report Number(s):
- LA-UR-18-20449
Journal ID: ISSN 9999-0018
- Grant/Contract Number:
- AC52-06NA25396
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Computational Crystallography Newsletter
- Additional Journal Information:
- Journal Volume: 9; Journal ID: ISSN 9999-0018
- Publisher:
- Phenix
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 97 MATHEMATICS AND COMPUTING; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY
Citation Formats
Terwilliger, Thomas Charles. Tools for model-building with cryo-EM maps. United States: N. p., 2018.
Web.
Terwilliger, Thomas Charles. Tools for model-building with cryo-EM maps. United States.
Terwilliger, Thomas Charles. Mon .
"Tools for model-building with cryo-EM maps". United States. https://www.osti.gov/servlets/purl/1441347.
@article{osti_1441347,
title = {Tools for model-building with cryo-EM maps},
author = {Terwilliger, Thomas Charles},
abstractNote = {There are new tools available to you in Phenix for interpreting cryo-EM maps. You can automatically sharpen (or blur) a map with phenix.auto_sharpen and you can segment a map with phenix.segment_and_split_map. If you have overlapping partial models for a map, you can merge them with phenix.combine_models. If you have a protein-RNA complex and protein chains have been accidentally built in the RNA region, you can try to remove them with phenix.remove_poor_fragments. You can put these together and automatically sharpen, segment and build a map with phenix.map_to_model.},
doi = {},
journal = {Computational Crystallography Newsletter},
number = ,
volume = 9,
place = {United States},
year = {Mon Jan 01 00:00:00 EST 2018},
month = {Mon Jan 01 00:00:00 EST 2018}
}
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