DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Continuity of states between the cholesteric → line hexatic transition and the condensation transition in DNA solutions

Abstract

A new method of finely temperature-tuning osmotic pressure allows one to identify the cholesteric → line hexatic transition of oriented or unoriented long-fragment DNA bundles in monovalent salt solutions as first order, with a small but finite volume discontinuity. This transition is similar to the osmotic pressure-induced expanded → condensed DNA transition in polyvalent salt solutions at small enough polyvalent salt concentrations. Therefore there exists a continuity of states between the two. This finding, together with the corresponding empirical equation of state, effectively relates the phase diagram of DNA solutions for monovalent salts to that for polyvalent salts and sheds some light on the complicated interactions between DNA molecules at high densities.

Authors:
 [1];  [2];  [3];  [4];  [1]
  1. Univ. of Massachusetts, Amherst, MA (United States)
  2. Univ. of Massachusetts, Amherst, MA (United States); J. Stefan Institute, Ljubljana (Slovenia); Univ. of Ljubljana, Ljubljana (Slovenia)
  3. Institut Laue Langevin (France); Ecole Normale Superieure de Lyon, Lyon (France); Columbia Univ., New York, NY (United States)
  4. Institut Laue-Langevin, Grenoble (France)
Publication Date:
Research Org.:
Univ. of Massachusetts, Amherst, MA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1221786
Alternate Identifier(s):
OSTI ID: 1441153
Grant/Contract Number:  
SC0008176
Resource Type:
Accepted Manuscript
Journal Name:
Scientific Reports
Additional Journal Information:
Journal Volume: 4; Journal ID: ISSN 2045-2322
Publisher:
Nature Publishing Group
Country of Publication:
United States
Language:
English
Subject:
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS; 74 ATOMIC AND MOLECULAR PHYSICS; biological physics; thermodynamics

Citation Formats

Yasar, Selcuk, Podgornik, Rudolf, Valle-Orero, Jessica, Johnson, Mark R., and Parsegian, V. Adrian. Continuity of states between the cholesteric → line hexatic transition and the condensation transition in DNA solutions. United States: N. p., 2014. Web. doi:10.1038/srep06877.
Yasar, Selcuk, Podgornik, Rudolf, Valle-Orero, Jessica, Johnson, Mark R., & Parsegian, V. Adrian. Continuity of states between the cholesteric → line hexatic transition and the condensation transition in DNA solutions. United States. https://doi.org/10.1038/srep06877
Yasar, Selcuk, Podgornik, Rudolf, Valle-Orero, Jessica, Johnson, Mark R., and Parsegian, V. Adrian. Wed . "Continuity of states between the cholesteric → line hexatic transition and the condensation transition in DNA solutions". United States. https://doi.org/10.1038/srep06877. https://www.osti.gov/servlets/purl/1221786.
@article{osti_1221786,
title = {Continuity of states between the cholesteric → line hexatic transition and the condensation transition in DNA solutions},
author = {Yasar, Selcuk and Podgornik, Rudolf and Valle-Orero, Jessica and Johnson, Mark R. and Parsegian, V. Adrian},
abstractNote = {A new method of finely temperature-tuning osmotic pressure allows one to identify the cholesteric → line hexatic transition of oriented or unoriented long-fragment DNA bundles in monovalent salt solutions as first order, with a small but finite volume discontinuity. This transition is similar to the osmotic pressure-induced expanded → condensed DNA transition in polyvalent salt solutions at small enough polyvalent salt concentrations. Therefore there exists a continuity of states between the two. This finding, together with the corresponding empirical equation of state, effectively relates the phase diagram of DNA solutions for monovalent salts to that for polyvalent salts and sheds some light on the complicated interactions between DNA molecules at high densities.},
doi = {10.1038/srep06877},
journal = {Scientific Reports},
number = ,
volume = 4,
place = {United States},
year = {Wed Nov 05 00:00:00 EST 2014},
month = {Wed Nov 05 00:00:00 EST 2014}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 34 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Gel-expanded to gel-condensed transition in neurofilament networks revealed by direct force measurements
journal, November 2009

  • Beck, Roy; Deek, Joanna; Jones, Jayna B.
  • Nature Materials, Vol. 9, Issue 1
  • DOI: 10.1038/nmat2566

Gel-expanded to gel-condensed transition in neurofilament networks revealed by direct force measurements
journal, November 2009

  • Beck, Roy; Deek, Joanna; Jones, Jayna B.
  • Nature Materials, Vol. 9, Issue 1
  • DOI: 10.1038/nmat2566

Molecular Structure of Deoxyribose Nucleic Acid and Nucleoprotein
journal, May 1955

  • Feughelman, M.; Langridge, R.; Seeds, W. E.
  • Nature, Vol. 175, Issue 4463
  • DOI: 10.1038/175834a0

Physical Chemistry of DNA Viruses
journal, May 2009


The Potential of an Infinite Rod-Like Molecule and the Distribution of the Counter Ions
journal, September 1951

  • Fuoss, R. M.; Katchalsky, A.; Lifson, S.
  • Proceedings of the National Academy of Sciences, Vol. 37, Issue 9
  • DOI: 10.1073/pnas.37.9.579

Screening and Fundamental Length Scales in Semidilute Na-DNA Aqueous Solutions
journal, September 2006


Vortex lattice melts like ice
journal, June 1995


Nucleosome Structure
journal, June 1980


Undulations Enhance the Effect of Helical Structure on DNA Interactions
journal, September 2010

  • Lee, D. J.; Wynveen, A.; Kornyshev, A. A.
  • The Journal of Physical Chemistry B, Vol. 114, Issue 35
  • DOI: 10.1021/jp104552u

Phase diagrams of DNA and poly(styrene-sulfonate) condensed by a poly-cationic protein, the salmon protamine
journal, January 2011

  • Toma, A. C.; de Frutos, M.; Livolant, F.
  • Soft Matter, Vol. 7, Issue 19
  • DOI: 10.1039/c1sm05617d

The Potential of an Infinite Rod-Like Molecule and the Distribution of the Counter Ions
journal, September 1951

  • Fuoss, R. M.; Katchalsky, A.; Lifson, S.
  • Proceedings of the National Academy of Sciences, Vol. 37, Issue 9
  • DOI: 10.1073/pnas.37.9.579

Supramolecular ordering of DNA in the cholesteric liquid crystalline phase: an ultrastructural study
journal, July 1993


Direct measurement of temperature-dependent solvation forces between DNA double helices
journal, January 1992


Protamine-induced DNA compaction but not aggregation shows effective radioprotection against double-strand breaks
journal, September 2009


Evidence for water structuring forces between surfaces
journal, December 2011

  • Stanley, Christopher; Rau, Donald C.
  • Current Opinion in Colloid & Interface Science, Vol. 16, Issue 6
  • DOI: 10.1016/j.cocis.2011.04.010

Nucleosome Structure
journal, June 1980


Equation of state for polymer liquid crystals: Theory and experiment
journal, January 1999


Electrostatic interactions in biological DNA-related systems
journal, January 2011

  • Cherstvy, A. G.
  • Physical Chemistry Chemical Physics, Vol. 13, Issue 21
  • DOI: 10.1039/c0cp02796k

Electrostatic interactions in biological DNA-related systems
journal, January 2011

  • Cherstvy, A. G.
  • Physical Chemistry Chemical Physics, Vol. 13, Issue 21
  • DOI: 10.1039/c0cp02796k

Repulsion of interfaces due to boundary water
journal, August 1976


Sperm Chromatin: An Overview
book, January 2013


Ionic effects on the elasticity of single DNA molecules
journal, June 1997

  • Baumann, C. G.; Smith, S. B.; Bloomfield, V. A.
  • Proceedings of the National Academy of Sciences, Vol. 94, Issue 12
  • DOI: 10.1073/pnas.94.12.6185

Preparation of Oriented DNA by Wet Spinning.
journal, January 1966


The bacteriophage φ29 portal motor can package DNA against a large internal force
journal, October 2001

  • Smith, Douglas E.; Tans, Sander J.; Smith, Steven B.
  • Nature, Vol. 413, Issue 6857
  • DOI: 10.1038/35099581

Refusing to Twist: Demonstration of a Line Hexatic Phase in DNA Liquid Crystals
journal, April 2000


Repulsive DNA-DNA Interactions Accelerate Viral DNA Packaging in Phage Phi29
journal, June 2014


Charge inversion accompanies DNA condensation by multivalent ions
journal, August 2007

  • Besteman, K.; Van Eijk, K.; Lemay, S. G.
  • Nature Physics, Vol. 3, Issue 9
  • DOI: 10.1038/nphys697

The Bacteriophage Genome Undergoes a Succession of Intracapsid Phase Transitions upon DNA Ejection
journal, February 2010


Sperm Chromatin: An Overview
book, January 2011


Continuity of States in Cholesteric - Line Hexatic Transition in Univalent and Polyvalent Salt DNA Solutions
journal, January 2014

  • Yasar, Selcuk; Podgornik, Rudolf; Parsegian, V. Adrian
  • MRS Proceedings, Vol. 1619
  • DOI: 10.1557/opl.2014.358

Structural investigations on DNA·protamine complexes: DNA·PROTAMINE COMPLEXES
journal, April 1976


Positional, Reorientational, and Bond Orientational Order in DNA Mesophases
journal, November 2001


Evidence for water structuring forces between surfaces
journal, December 2011

  • Stanley, Christopher; Rau, Donald C.
  • Current Opinion in Colloid & Interface Science, Vol. 16, Issue 6
  • DOI: 10.1016/j.cocis.2011.04.010

Liquid crystal models of biological materials and processes
journal, January 2010


DNA arrangement in isometric phage heads
journal, August 1977

  • Earnshaw, W. C.; Harrison, S. C.
  • Nature, Vol. 268, Issue 5621
  • DOI: 10.1038/268598a0

DNA arrangement in isometric phage heads
journal, August 1977

  • Earnshaw, W. C.; Harrison, S. C.
  • Nature, Vol. 268, Issue 5621
  • DOI: 10.1038/268598a0

A model for the structure of chromatin in mammalian sperm
journal, May 1982


Bond orientational order, molecular motion, and free energy of high-density DNA mesophases.
journal, April 1996

  • Podgornik, R.; Strey, H. H.; Gawrisch, K.
  • Proceedings of the National Academy of Sciences, Vol. 93, Issue 9
  • DOI: 10.1073/pnas.93.9.4261

The origin of the A to B transition in DNA fibers and films
journal, June 1988


Analysis of DNA−Protamine Interactions by Optical Detection of Magnetic Resonance
journal, September 1997

  • Prieto, Maria C.; Maki, August H.; Balhorn, Rod
  • Biochemistry, Vol. 36, Issue 39
  • DOI: 10.1021/bi971061l

The Sperm Cell
book, April 2006


Physical virology
journal, October 2010

  • Roos, W. H.; Bruinsma, R.; Wuite, G. J. L.
  • Nature Physics, Vol. 6, Issue 10
  • DOI: 10.1038/nphys1797

Physical virology
journal, October 2010

  • Roos, W. H.; Bruinsma, R.; Wuite, G. J. L.
  • Nature Physics, Vol. 6, Issue 10
  • DOI: 10.1038/nphys1797

Perspective: Coulomb fluids—Weak coupling, strong coupling, in between and beyond
journal, October 2013

  • Naji, Ali; Kanduč, Matej; Forsman, Jan
  • The Journal of Chemical Physics, Vol. 139, Issue 15
  • DOI: 10.1063/1.4824681

Perspective: Coulomb fluids -- weak coupling, strong coupling, in between and beyond
text, January 2013


Analysis of DNA−Protamine Interactions by Optical Detection of Magnetic Resonance
journal, September 1997

  • Prieto, Maria C.; Maki, August H.; Balhorn, Rod
  • Biochemistry, Vol. 36, Issue 39
  • DOI: 10.1021/bi971061l

Measuring Osmotic Pressure of Poly(ethylene glycol) Solutions by Sedimentation Equilibrium Ultracentrifugation
journal, September 2003

  • Stanley, Christopher B.; Strey, Helmut H.
  • Macromolecules, Vol. 36, Issue 18
  • DOI: 10.1021/ma034079e

Bond orientational order, molecular motion, and free energy of high-density DNA mesophases.
journal, April 1996

  • Podgornik, R.; Strey, H. H.; Gawrisch, K.
  • Proceedings of the National Academy of Sciences, Vol. 93, Issue 9
  • DOI: 10.1073/pnas.93.9.4261

Evidence of Novel Secondary Structure in DNA-Bound Protamine Is Revealed by Raman Spectroscopy
journal, June 1994

  • Hud, Nicholas V.; Milanovich, Fred P.; Balhorn, Rod
  • Biochemistry, Vol. 33, Issue 24
  • DOI: 10.1021/bi00190a005

Principles of Condensed Matter Physics
book, January 1995


A study of the structure of highly concentrated phases of DNA by X-ray diffraction
journal, September 1992

  • Durand, D.; Doucet, J.; Livolant, F.
  • Journal de Physique II, Vol. 2, Issue 9
  • DOI: 10.1051/jp2:1992233

A model for the structure of chromatin in mammalian sperm
journal, May 1982


A Comparison of DNA Compaction by Arginine and Lysine Peptides: A Physical Basis for Arginine Rich Protamines
journal, April 2013

  • DeRouchey, Jason; Hoover, Brandon; Rau, Donald C.
  • Biochemistry, Vol. 52, Issue 17
  • DOI: 10.1021/bi4001408

Ionic effects on the elasticity of single DNA molecules
journal, June 1997

  • Baumann, C. G.; Smith, S. B.; Bloomfield, V. A.
  • Proceedings of the National Academy of Sciences, Vol. 94, Issue 12
  • DOI: 10.1073/pnas.94.12.6185

Role of sperm chromatin abnormalities and DNA damage in male infertility
journal, July 2003


Role of osmotic and hydrostatic pressures in bacteriophage genome ejection
text, January 2012


Evidence of Novel Secondary Structure in DNA-Bound Protamine Is Revealed by Raman Spectroscopy
journal, June 1994

  • Hud, Nicholas V.; Milanovich, Fred P.; Balhorn, Rod
  • Biochemistry, Vol. 33, Issue 24
  • DOI: 10.1021/bi00190a005

Measuring the Force Ejecting DNA from Phage
journal, May 2004

  • Evilevitch, Alex; Castelnovo, Martin; Knobler, Charles M.
  • The Journal of Physical Chemistry B, Vol. 108, Issue 21
  • DOI: 10.1021/jp0376525

Role of sperm chromatin abnormalities and DNA damage in male infertility
journal, July 2003


Measuring the force ejecting DNA from phage
preprint, January 2004


Preparation of Oriented DNA by Wet Spinning.
journal, January 1966


The Bacteriophage Genome Undergoes a Succession of Intracapsid Phase Transitions upon DNA Ejection
journal, February 2010


Role of osmotic and hydrostatic pressures in bacteriophage genome ejection
journal, February 2013


Interactions in Macromolecular Complexes Used as Nonviral Vectors for Gene Delivery
book, October 2008


Nanoscale structure of protamine/DNA complexes for gene delivery
journal, February 2013

  • Motta, Simona; Brocca, Paola; Del Favero, Elena
  • Applied Physics Letters, Vol. 102, Issue 5
  • DOI: 10.1063/1.4790588

The origin of the A to B transition in DNA fibers and films
journal, June 1988


DNA condensation
journal, June 1996


The Relationship Between Chromatin Structure and DNA Damage in Mammalian Spermatozoa
book, January 2011


Interactions in Macromolecular Complexes Used as Nonviral Vectors for Gene Delivery
book, October 2008


Works referencing / citing this record:

Molecular Dynamics Simulation of High Density DNA Arrays
journal, January 2018


X-ray characterization of mesophases of human telomeric G-quadruplexes and other DNA analogues
journal, June 2016

  • Yasar, Selcuk; Schimelman, Jacob B.; Aksoyoglu, M. Alphan
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep27079

A Materials Perspective on Casimir and van der Waals Interactions
text, January 2015


Sticking and stacking: Persistent ordering of fragmented DNA analogs
journal, August 2018

  • Podgornik, Rudolf
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 35
  • DOI: 10.1073/pnas.1810662115

Order and interactions in DNA arrays: Multiscale molecular dynamics simulation
text, January 2017


Depletion-driven morphological transitions in hexagonal crystallites of virus rods
journal, January 2019

  • Sung, Baeckkyoung; Wensink, Henricus Herman; Grelet, Eric
  • Soft Matter, Vol. 15, Issue 46
  • DOI: 10.1039/c9sm01207a

Modelling and DNA topology of compact 2-start and 1-start chromatin fibres
journal, June 2019

  • Wu, Chenyi; Travers, Andrew
  • Nucleic Acids Research, Vol. 47, Issue 18
  • DOI: 10.1093/nar/gkz495

Order and interactions in DNA arrays: Multiscale molecular dynamics simulation
text, January 2017


Order and interactions in DNA arrays: Multiscale molecular dynamics simulation
journal, July 2017


Equation of state of colloidal membranes
journal, January 2019

  • Balchunas, Andrew J.; Cabanas, Rafael A.; Zakhary, Mark J.
  • Soft Matter, Vol. 15, Issue 34
  • DOI: 10.1039/c9sm01054h