DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates

Authors:
ORCiD logo; ; ; ; ; ; ; ; ; ; ; ; ;
Publication Date:
Sponsoring Org.:
USDOE
OSTI Identifier:
1441082
Resource Type:
Published Article
Journal Name:
PLoS ONE
Additional Journal Information:
Journal Name: PLoS ONE Journal Volume: 13 Journal Issue: 6; Journal ID: ISSN 1932-6203
Publisher:
Public Library of Science (PLoS)
Country of Publication:
United States
Language:
English

Citation Formats

Lomonaco, Sara, Crawford, Matthew A., Lascols, Christine, Timme, Ruth E., Anderson, Kevin, Hodge, David R., Fisher, Debra J., Pillai, Segaran P., Morse, Stephen A., Khan, Erum, Hughes, Molly A., Allard, Marc W., Sharma, Shashi K., and Chang, ed., Yung-Fu. Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates. United States: N. p., 2018. Web. doi:10.1371/journal.pone.0198526.
Lomonaco, Sara, Crawford, Matthew A., Lascols, Christine, Timme, Ruth E., Anderson, Kevin, Hodge, David R., Fisher, Debra J., Pillai, Segaran P., Morse, Stephen A., Khan, Erum, Hughes, Molly A., Allard, Marc W., Sharma, Shashi K., & Chang, ed., Yung-Fu. Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates. United States. https://doi.org/10.1371/journal.pone.0198526
Lomonaco, Sara, Crawford, Matthew A., Lascols, Christine, Timme, Ruth E., Anderson, Kevin, Hodge, David R., Fisher, Debra J., Pillai, Segaran P., Morse, Stephen A., Khan, Erum, Hughes, Molly A., Allard, Marc W., Sharma, Shashi K., and Chang, ed., Yung-Fu. Fri . "Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates". United States. https://doi.org/10.1371/journal.pone.0198526.
@article{osti_1441082,
title = {Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates},
author = {Lomonaco, Sara and Crawford, Matthew A. and Lascols, Christine and Timme, Ruth E. and Anderson, Kevin and Hodge, David R. and Fisher, Debra J. and Pillai, Segaran P. and Morse, Stephen A. and Khan, Erum and Hughes, Molly A. and Allard, Marc W. and Sharma, Shashi K. and Chang, ed., Yung-Fu},
abstractNote = {},
doi = {10.1371/journal.pone.0198526},
journal = {PLoS ONE},
number = 6,
volume = 13,
place = {United States},
year = {Fri Jun 08 00:00:00 EDT 2018},
month = {Fri Jun 08 00:00:00 EDT 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1371/journal.pone.0198526

Citation Metrics:
Cited by: 36 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

mgrB Mutations Mediating Polymyxin B Resistance in Klebsiella pneumoniae Isolates from Rectal Surveillance Swabs in Brazil
journal, September 2016

  • Aires, Caio Augusto Martins; Pereira, Polyana Silva; Asensi, Marise Dutra
  • Antimicrobial Agents and Chemotherapy, Vol. 60, Issue 11
  • DOI: 10.1128/AAC.01456-16

Complete Genome Sequence of KPC-3- and CTX-M-15-Producing Klebsiella pneumoniae Sequence Type 307
journal, April 2016


A Common Flanking Region in Promiscuous Plasmids Encoding bla NDM-1 in Klebsiella pneumoniae Isolated in Singapore
journal, March 2016

  • Chen, Ying-Tsong; Siu, L. Kristopher; Tsai, Yu-Kuo
  • Microbial Drug Resistance, Vol. 22, Issue 2
  • DOI: 10.1089/mdr.2015.0132

Predominance of Klebsiella pneumoniaeST14 carrying CTX-M-15 causing neonatal sepsis in Tanzania
journal, October 2013

  • Mshana, Stephen E.; Hain, Torsten; Domann, Eugen
  • BMC Infectious Diseases, Vol. 13, Issue 1
  • DOI: 10.1186/1471-2334-13-466

High Incidence of New Delhi Metallo-Beta-Lactamase-Producing Klebsiella pneumoniae Isolates in Sharjah, United Arab Emirates
journal, February 2014

  • Dash, Nihar; Panigrahi, Debadatta; Zarouni, Mansour Al
  • Microbial Drug Resistance, Vol. 20, Issue 1
  • DOI: 10.1089/mdr.2013.0040

ISfinder: the reference centre for bacterial insertion sequences
journal, January 2006


Dissemination of bla KPC-2 by the Spread of Klebsiella pneumoniae Clonal Complex 258 Clones (ST258, ST11, ST437) and Plasmids (IncFII, IncN, IncL/M) among Enterobacteriaceae Species in Brazil
journal, May 2011

  • Andrade, Leonardo Neves; Curiao, Tânia; Ferreira, Joseane Cristina
  • Antimicrobial Agents and Chemotherapy, Vol. 55, Issue 7
  • DOI: 10.1128/AAC.01783-10

Isolation of OXA-48 Carbapenemase-Producing Klebsiella pneumoniae ST101 from an Overseas Traveler Returning to Japan
journal, January 2014

  • Hashimoto, Aki; Nagamatsu, Maki; Ohmagari, Norio
  • Japanese Journal of Infectious Diseases, Vol. 67, Issue 2
  • DOI: 10.7883/yoken.67.120

Molecular epidemiology of colistin-resistant Enterobacteriaceae in inpatient and avian isolates from China: high prevalence of mcr -negative Klebsiella pneumoniae
journal, October 2017


Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
journal, September 2016

  • Lees, John A.; Vehkala, Minna; Välimäki, Niko
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms12797

Colistin in Pig Production: Chemistry, Mechanism of Antibacterial Action, Microbial Resistance Emergence, and One Health Perspectives
journal, November 2016

  • Rhouma, Mohamed; Beaudry, Francis; Thériault, William
  • Frontiers in Microbiology, Vol. 7
  • DOI: 10.3389/fmicb.2016.01789

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
journal, April 2014

  • Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora
  • Antimicrobial Agents and Chemotherapy, Vol. 58, Issue 7
  • DOI: 10.1128/AAC.02412-14

Genome Sequences of Multidrug-Resistant, Colistin-Susceptible and -Resistant Klebsiella pneumoniae Clinical Isolates from Pakistan
journal, December 2016


Identification and screening of carbapenemase-producing Enterobacteriaceae
journal, May 2012


Rapid Expansion of KPC-2-Producing Klebsiella pneumoniae Isolates in Two Texas Hospitals due to Clonal Spread of ST258 and ST307 Lineages
journal, August 2013

  • Castanheira, Mariana; Farrell, Sarah E.; Wanger, Audrey
  • Microbial Drug Resistance, Vol. 19, Issue 4
  • DOI: 10.1089/mdr.2012.0238

Resistance to Colistin Associated with a Single Amino Acid Change in Protein PmrB among Klebsiella pneumoniae Isolates of Worldwide Origin
journal, June 2014

  • Jayol, Aurélie; Poirel, Laurent; Brink, Adrian
  • Antimicrobial Agents and Chemotherapy, Vol. 58, Issue 8
  • DOI: 10.1128/AAC.00084-14

Efficient transmission of IncFIIY and IncL plasmids and Klebsiella pneumoniae ST101 clone producing OXA-48, NDM-1 or OXA-181 in Bucharest hospitals
journal, August 2016


Emergence of Klebsiella pneumoniae co-producing NDM-1, OXA-48, CTX-M-15, CMY-16, QnrA and ArmA in Switzerland
journal, September 2014


Outbreak of KPC-2-producing Enterobacteriaceae caused by clonal dissemination of Klebsiella pneumoniae ST307 carrying an IncX3-type plasmid harboring a truncated Tn4401a
journal, April 2017


CXC Chemokines Exhibit Bactericidal Activity against Multidrug-Resistant Gram-Negative Pathogens
journal, November 2017

  • Crawford, Matthew A.; Fisher, Debra J.; Leung, Lisa M.
  • mBio, Vol. 8, Issue 6
  • DOI: 10.1128/mBio.01549-17

Osteomyelitis Due to Multiple Carbapenemase-Producing Gram-Negative Bacteria: The First Case Report of a GES-13-Producing Pseudomonas aeruginosa Isolate in Canada
journal, January 2014

  • Sepehri, Shadi; Poliquin, Guillaume; Alfattoh, Nora
  • Canadian Journal of Infectious Diseases and Medical Microbiology, Vol. 25, Issue 4
  • DOI: 10.1155/2014/657047

Antibiotic resistance is the quintessential One Health issue
journal, July 2016

  • Robinson, T. P.; Bu, D. P.; Carrique-Mas, J.
  • Transactions of The Royal Society of Tropical Medicine and Hygiene, Vol. 110, Issue 7
  • DOI: 10.1093/trstmh/trw048

Emergence of NDM-1 in Association with OXA-48 in Klebsiella pneumoniae from Tunisia
journal, June 2013

  • Ben Nasr, Adam; Decré, Dominique; Compain, Fabrice
  • Antimicrobial Agents and Chemotherapy, Vol. 57, Issue 8
  • DOI: 10.1128/AAC.00536-13

wzi Gene Sequencing, a Rapid Method for Determination of Capsular Type for Klebsiella Strains
journal, October 2013

  • Brisse, S.; Passet, V.; Haugaard, A. B.
  • Journal of Clinical Microbiology, Vol. 51, Issue 12
  • DOI: 10.1128/JCM.01924-13

PHASTER: a better, faster version of the PHAST phage search tool
journal, May 2016

  • Arndt, David; Grant, Jason R.; Marcu, Ana
  • Nucleic Acids Research, Vol. 44, Issue W1
  • DOI: 10.1093/nar/gkw387

Outbreak of OXA-48-Producing Klebsiella pneumoniae Involving a Sequence Type 101 Clone in Batna University Hospital, Algeria
journal, December 2016

  • Loucif, Lotfi; Kassah-Laouar, Ahmed; Saidi, Mahdia
  • Antimicrobial Agents and Chemotherapy, Vol. 60, Issue 12
  • DOI: 10.1128/AAC.00525-16

Molecular and epidemiological characterization of carbapenemase-producing Enterobacteriaceae in Norway, 2007 to 2014
journal, November 2017

  • Samuelsen, Ørjan; Overballe-Petersen, Søren; Bjørnholt, Jørgen Vildershøj
  • PLOS ONE, Vol. 12, Issue 11
  • DOI: 10.1371/journal.pone.0187832

Genomically Informed Surveillance for Carbapenem-Resistant Enterobacteriaceae in a Health Care System
journal, July 2015


KPC and NDM-1 Genes in Related Enterobacteriaceae Strains and Plasmids from Pakistan and the United States
journal, June 2015

  • Pesesky, Mitchell W.; Hussain, Tahir; Wallace, Meghan
  • Emerging Infectious Diseases, Vol. 21, Issue 6
  • DOI: 10.3201/eid2106.141504

Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study
journal, February 2016


Read count approach for DNA copy number variants detection
journal, December 2011


Identification of acquired antimicrobial resistance genes
journal, July 2012

  • Zankari, E.; Hasman, H.; Cosentino, S.
  • Journal of Antimicrobial Chemotherapy, Vol. 67, Issue 11
  • DOI: 10.1093/jac/dks261

The global epidemiology of carbapenemase-producing Enterobacteriaceae
journal, August 2016


Sequence of Closely Related Plasmids Encoding blaNDM-1 in Two Unrelated Klebsiella pneumoniae Isolates in Singapore
journal, November 2012


PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels
journal, April 2015


progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
journal, June 2010


Clonal dissemination of multilocus sequence type ST15 KPC-2-producing Klebsiella pneumoniae in Bulgaria
journal, August 2015

  • Markovska, Rumyana; Stoeva, Temenuga; Schneider, Ines
  • APMIS, Vol. 123, Issue 10
  • DOI: 10.1111/apm.12433

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
journal, November 2015


High rate of faecal carriage of extended-spectrum β-lactamase and OXA-48 carbapenemase-producing Enterobacteriaceae at a University hospital in Morocco
journal, April 2014

  • Girlich, D.; Bouihat, N.; Poirel, L.
  • Clinical Microbiology and Infection, Vol. 20, Issue 4
  • DOI: 10.1111/1469-0691.12325

MgrB Alterations Mediate Colistin Resistance in Klebsiella pneumoniae Isolates from Iran
journal, December 2017


First report of a Klebsiella pneumoniae strain coproducing NDM-1, VIM-1 and OXA-48 carbapenemases isolated in Morocco
journal, December 2012

  • Barguigua, Abouddihaj; El otmani, Fatima; Lakbakbi el yaagoubi, Fouzia
  • APMIS, Vol. 121, Issue 7
  • DOI: 10.1111/apm.12034

Dominance of IMP-4-Producing Enterobacter cloacae among Carbapenemase-Producing Enterobacteriaceae in Australia
journal, April 2015

  • Sidjabat, Hanna E.; Townell, Nicola; Nimmo, Graeme R.
  • Antimicrobial Agents and Chemotherapy, Vol. 59, Issue 7
  • DOI: 10.1128/AAC.04378-14

High prevalence of 16S rRNA methylase RmtB among CTX-M extended-spectrum β-lactamase-producing Klebsiella pneumoniae from Islamabad, Pakistan
journal, June 2013


PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
journal, July 2017

  • Zankari, Ea; Allesøe, Rosa; Joensen, Katrine G.
  • Journal of Antimicrobial Chemotherapy, Vol. 72, Issue 10
  • DOI: 10.1093/jac/dkx217

Klebsiella pneumoniae: a major worldwide source and shuttle for antibiotic resistance
journal, May 2017

  • Navon-Venezia, Shiri; Kondratyeva, Kira; Carattoli, Alessandra
  • FEMS Microbiology Reviews, Vol. 41, Issue 3
  • DOI: 10.1093/femsre/fux013

INTEGRALL: a database and search engine for integrons, integrases and gene cassettes
journal, February 2009


Structure, Genetics and Worldwide Spread of New Delhi Metallo-β-lactamase (NDM): a threat to public health
journal, April 2017


First description of blaNDM-1, blaOXA-48, blaOXA-181 producing Enterobacteriaceae strains in Romania
journal, December 2013

  • Székely, Edit; Damjanova, Ivelina; Jánvári, Laura
  • International Journal of Medical Microbiology, Vol. 303, Issue 8
  • DOI: 10.1016/j.ijmm.2013.10.001

Co-production of NDM-1 and OXA-232 by ST16 Klebsiella pneumoniae , Italy, 2016
journal, October 2017

  • Avolio, Manuela; Vignaroli, Carla; Crapis, Massimo
  • Future Microbiology, Vol. 12, Issue 13
  • DOI: 10.2217/fmb-2017-0041

Worldwide Dissemination of the NDM-Type Carbapenemases in Gram-Negative Bacteria
journal, January 2014

  • Dortet, Laurent; Poirel, Laurent; Nordmann, Patrice
  • BioMed Research International, Vol. 2014
  • DOI: 10.1155/2014/249856

Duplication of the chromosomal blaSHV-11 gene in a clinical hypermutable strain of Klebsiella pneumoniae
journal, October 2010


Multihospital Occurrence of Pan-Resistant Klebsiella pneumoniae Sequence Type 147 with an IS Ecp1 -Directed bla OXA-181 Insertion in the mgrB Gene in the United Arab Emirates
journal, April 2017

  • Sonnevend, Ágnes; Ghazawi, Akela; Hashmey, Rayhan
  • Antimicrobial Agents and Chemotherapy, Vol. 61, Issue 7
  • DOI: 10.1128/AAC.00418-17

Large Oligoclonal Outbreak Due to Klebsiella pneumoniae ST14 and ST26 Producing the FOX-7 AmpC  -Lactamase in a Neonatal Intensive Care Unit
journal, October 2013

  • Arena, F.; Giani, T.; Becucci, E.
  • Journal of Clinical Microbiology, Vol. 51, Issue 12
  • DOI: 10.1128/JCM.01982-13

Rapid Detection of Polymyxin Resistance in Enterobacteriaceae
journal, June 2016

  • Nordmann, Patrice; Jayol, Aurélie; Poirel, Laurent
  • Emerging Infectious Diseases, Vol. 22, Issue 6
  • DOI: 10.3201/eid2206.151840

Colistin Resistance Mechanisms in Klebsiella pneumoniae Strains from Taiwan
journal, February 2015

  • Cheng, Yi-Hsiang; Lin, Tzu-Lung; Pan, Yi-Jiun
  • Antimicrobial Agents and Chemotherapy, Vol. 59, Issue 5
  • DOI: 10.1128/AAC.04763-14

MgrB Inactivation Is a Common Mechanism of Colistin Resistance in KPC-Producing Klebsiella pneumoniae of Clinical Origin
journal, July 2014

  • Cannatelli, Antonio; Giani, Tommaso; D'Andrea, Marco Maria
  • Antimicrobial Agents and Chemotherapy, Vol. 58, Issue 10
  • DOI: 10.1128/AAC.03110-14

Complete Genome Sequence of Bacteriophage SSU5 Specific for Salmonella enterica serovar Typhimurium Rough Strains
journal, September 2012


The First Klebsiella pneumoniae Isolate Co-Producing OXA-48 and NDM-1 in Turkey
journal, January 2015


The spread of KPC-producing Enterobacteriaceae in Spain: WGS analysis of the emerging high-risk clones of Klebsiella pneumoniae ST11/KPC-2, ST101/KPC-2 and ST512/KPC-3
journal, August 2016

  • Oteo, Jesús; Pérez-Vázquez, María; Bautista, Verónica
  • Journal of Antimicrobial Chemotherapy, Vol. 71, Issue 12
  • DOI: 10.1093/jac/dkw321

First report of OXA-181 and NDM-1 from a clinical Klebsiella pneumoniae isolate from Nigeria
journal, August 2017

  • Uwaezuoke, Nkolika Stella; Kieffer, Nicolas; Iregbu, Kenneth C.
  • International Journal of Infectious Diseases, Vol. 61
  • DOI: 10.1016/j.ijid.2017.05.004

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
journal, October 2016

  • Jia, Baofeng; Raphenya, Amogelang R.; Alcock, Brian
  • Nucleic Acids Research, Vol. 45, Issue D1
  • DOI: 10.1093/nar/gkw1004

Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database
journal, March 2016

  • Allard, Marc W.; Strain, Errol; Melka, David
  • Journal of Clinical Microbiology, Vol. 54, Issue 8
  • DOI: 10.1128/JCM.00081-16