Using a spatially-distributed hydrologic biogeochemistry model with a nitrogen transport module to study the spatial variation of carbon processes in a Critical Zone Observatory
Abstract
Terrestrial carbon processes are affected by soil moisture, soil temperature, nitrogen availability and solar radiation, among other factors. Most of the current ecosystem biogeochemistry models represent one point in space, and have limited characterization of hydrologic processes. Therefore these models can neither resolve the topographically driven spatial variability of water, energy, and nutrient, nor their effects on carbon processes. A spatially-distributed land surface hydrologic biogeochemistry model, Flux-PIHM-BGC, is developed by coupling the Biome-BGC model with a physically-based land surface hydrologic model, Flux-PIHM. In the coupled system, each Flux-PIHM model grid couples a 1-D Biome-BGC model. In addition, a topographic solar radiation module and an advection-driven nitrogen transport module are added to represent the impact of topography on nutrient transport and solar energy distribution. Because Flux-PIHM is able to simulate lateral groundwater flow and represent the land surface heterogeneities caused by topography, Flux-PIHM-BGC is capable of simulating the complex interaction among water, energy, nutrient, and carbon in time and space. The Flux-PIHM-BGC model is tested at the Susquehanna/Shale Hills Critical Zone Observatory. Model results show that distributions of carbon and nitrogen stocks and fluxes are strongly affected by topography and landscape position, and tree growth is nitrogen limited. The predicted abovegroundmore »
- Publication Date:
- Research Org.:
- Pennsylvania State Univ., University Park, PA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1439963
- Alternate Identifier(s):
- OSTI ID: 1562949
- Grant/Contract Number:
- SC0012003
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Ecological Modelling
- Additional Journal Information:
- Journal Volume: 380; Journal Issue: C; Related Information: Link to the Flux-PIHM-BGC repository:https://github.com/PSUmodeling/MM-PIHM; Journal ID: ISSN 0304-3800
- Publisher:
- Elsevier
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; Ecohydrology; Spatial patterns; Critical Zone Observatory; Nitrogen transport
Citation Formats
Shi, Yuning, Eissenstat, David M., He, Yuting, and Davis, Kenneth J.. Using a spatially-distributed hydrologic biogeochemistry model with a nitrogen transport module to study the spatial variation of carbon processes in a Critical Zone Observatory. United States: N. p., 2018.
Web. doi:10.1016/j.ecolmodel.2018.04.007.
Shi, Yuning, Eissenstat, David M., He, Yuting, & Davis, Kenneth J.. Using a spatially-distributed hydrologic biogeochemistry model with a nitrogen transport module to study the spatial variation of carbon processes in a Critical Zone Observatory. United States. https://doi.org/10.1016/j.ecolmodel.2018.04.007
Shi, Yuning, Eissenstat, David M., He, Yuting, and Davis, Kenneth J.. Sat .
"Using a spatially-distributed hydrologic biogeochemistry model with a nitrogen transport module to study the spatial variation of carbon processes in a Critical Zone Observatory". United States. https://doi.org/10.1016/j.ecolmodel.2018.04.007. https://www.osti.gov/servlets/purl/1439963.
@article{osti_1439963,
title = {Using a spatially-distributed hydrologic biogeochemistry model with a nitrogen transport module to study the spatial variation of carbon processes in a Critical Zone Observatory},
author = {Shi, Yuning and Eissenstat, David M. and He, Yuting and Davis, Kenneth J.},
abstractNote = {Terrestrial carbon processes are affected by soil moisture, soil temperature, nitrogen availability and solar radiation, among other factors. Most of the current ecosystem biogeochemistry models represent one point in space, and have limited characterization of hydrologic processes. Therefore these models can neither resolve the topographically driven spatial variability of water, energy, and nutrient, nor their effects on carbon processes. A spatially-distributed land surface hydrologic biogeochemistry model, Flux-PIHM-BGC, is developed by coupling the Biome-BGC model with a physically-based land surface hydrologic model, Flux-PIHM. In the coupled system, each Flux-PIHM model grid couples a 1-D Biome-BGC model. In addition, a topographic solar radiation module and an advection-driven nitrogen transport module are added to represent the impact of topography on nutrient transport and solar energy distribution. Because Flux-PIHM is able to simulate lateral groundwater flow and represent the land surface heterogeneities caused by topography, Flux-PIHM-BGC is capable of simulating the complex interaction among water, energy, nutrient, and carbon in time and space. The Flux-PIHM-BGC model is tested at the Susquehanna/Shale Hills Critical Zone Observatory. Model results show that distributions of carbon and nitrogen stocks and fluxes are strongly affected by topography and landscape position, and tree growth is nitrogen limited. The predicted aboveground and soil carbon distributions generally agree with the macro patterns observed. Although the model underestimates the spatial variation, the predicted watershed average values are close to the observations. Lastly, the coupled Flux-PIHM-BGC model provides an important tool to study spatial variations in terrestrial carbon and nitrogen processes and their interactions with environmental factors, and to predict the spatial structure of the responses of ecosystems to climate change.},
doi = {10.1016/j.ecolmodel.2018.04.007},
journal = {Ecological Modelling},
number = C,
volume = 380,
place = {United States},
year = {2018},
month = {5}
}
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Works referenced in this record:
Hot Spots and Hot Moments of Dissolved Organic Carbon Export and Soil Organic Carbon Storage in the Shale Hills Catchment
journal, January 2011
- Andrews, Danielle M.; Lin, Henry; Zhu, Qing
- Vadose Zone Journal, Vol. 10, Issue 3
Assessing the effectiveness of land and water management practices on nonpoint source nitrate levels in an alluvial stream–aquifer system
journal, August 2015
- Bailey, Ryan T.; Gates, Timothy K.; Romero, Erica C.
- Journal of Contaminant Hydrology, Vol. 179
Modeling Variably Saturated Multispecies Reactive Groundwater Solute Transport with MODFLOW-UZF and RT3D
journal, November 2012
- Bailey, Ryan T.; Morway, Eric D.; Niswonger, Richard G.
- Groundwater, Vol. 51, Issue 5
Understanding watershed hydrogeochemistry: 1. Development of RT-Flux-PIHM: DEVELOPMENT OF RT-FLUX-PIHM
journal, March 2017
- Bao, Chen; Li, Li; Shi, Yuning
- Water Resources Research, Vol. 53, Issue 3
Geomorphology of Steepland Headwaters: the Transition from Hillslopes to Channels
journal, August 2005
- Benda, Lee; Hassan, Marwan A.; Church, Michael
- Journal of the American Water Resources Association, Vol. 41, Issue 4
Uncertainty in temperature projections reduced using carbon cycle and climate observations
journal, May 2013
- Bodman, Roger W.; Rayner, Peter J.; Karoly, David J.
- Nature Climate Change, Vol. 3, Issue 8
Surface-subsurface flow modeling with path-based runoff routing, boundary condition-based coupling, and assimilation of multisource observation data: SURFACE-SUBSURFACE FLOW MODELING
journal, February 2010
- Camporese, M.; Paniconi, C.; Putti, M.
- Water Resources Research, Vol. 46, Issue 2
Improving the representation of hydrologic processes in Earth System Models: REPRESENTING HYDROLOGIC PROCESSES IN EARTH SYSTEM MODELS
journal, August 2015
- Clark, Martyn P.; Fan, Ying; Lawrence, David M.
- Water Resources Research, Vol. 51, Issue 8
A Statistical Exploration of the Relationships of Soil Moisture Characteristics to the Physical Properties of Soils
journal, June 1984
- Cosby, B. J.; Hornberger, G. M.; Clapp, R. B.
- Water Resources Research, Vol. 20, Issue 6
Rapid calculation of terrain parameters for radiation modeling from digital elevation data
journal, January 1990
- Dozier, J.; Frew, J.
- IEEE Transactions on Geoscience and Remote Sensing, Vol. 28, Issue 5
Implementation of Noah land surface model advances in the National Centers for Environmental Prediction operational mesoscale Eta model
journal, November 2003
- Ek, M. B.; Mitchell, K. E.; Lin, Y.
- Journal of Geophysical Research: Atmospheres, Vol. 108, Issue D22
A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species
journal, June 1980
- Farquhar, G. D.; von Caemmerer, S.; Berry, J. A.
- Planta, Vol. 149, Issue 1
Modeling plant-water interactions: an ecohydrological overview from the cell to the global scale: Modeling plant-water interactions
journal, November 2015
- Fatichi, Simone; Pappas, Christoforos; Ivanov, Valeriy Y.
- Wiley Interdisciplinary Reviews: Water, Vol. 3, Issue 3
Modeling the Terrestrial Biosphere
journal, October 2014
- Fisher, Joshua B.; Huntzinger, Deborah N.; Schwalm, Christopher R.
- Annual Review of Environment and Resources, Vol. 39, Issue 1
Uncertainties in CMIP5 Climate Projections due to Carbon Cycle Feedbacks
journal, January 2014
- Friedlingstein, Pierre; Meinshausen, Malte; Arora, Vivek K.
- Journal of Climate, Vol. 27, Issue 2
Reliance on shallow soil water in a mixed-hardwood forest in central Pennsylvania
journal, November 2015
- Gaines, Katie P.; Stanley, Jane W.; Meinzer, Frederick C.
- Tree Physiology, Vol. 36, Issue 4
Aboveground Forest Biomass and the Global Carbon Balance
journal, June 2005
- Houghton, R. A.
- Global Change Biology, Vol. 11, Issue 6
Vegetation-hydrology dynamics in complex terrain of semiarid areas: 1. A mechanistic approach to modeling dynamic feedbacks: MODELING VEGETATION-HYDROLOGY FEEDBACKS
journal, March 2008
- Ivanov, Valeriy Y.; Bras, Rafael L.; Vivoni, Enrique R.
- Water Resources Research, Vol. 44, Issue 3
Hydrological effects on carbon cycles of Canada’s forests and wetlands
journal, January 2006
- Ju, Weimin; Chen, Jing M.; Black, T. Andrew
- Tellus B: Chemical and Physical Meteorology, Vol. 58, Issue 1
Integrated surface–groundwater flow modeling: A free-surface overland flow boundary condition in a parallel groundwater flow model
journal, July 2006
- Kollet, Stefan J.; Maxwell, Reed M.
- Advances in Water Resources, Vol. 29, Issue 7
Capturing the influence of groundwater dynamics on land surface processes using an integrated, distributed watershed model: INFLUENCE OF GROUNDWATER DYNAMICS ON LAND
journal, February 2008
- Kollet, Stefan J.; Maxwell, Reed M.
- Water Resources Research, Vol. 44, Issue 2
The effect of vertically resolved soil biogeochemistry and alternate soil C and N models on C dynamics of CLM4
journal, January 2013
- Koven, C. D.; Riley, W. J.; Subin, Z. M.
- Biogeosciences, Vol. 10, Issue 11
Temporal Stability of Soil Moisture Spatial Pattern and Subsurface Preferential Flow Pathways in the Shale Hills Catchment
journal, January 2006
- Lin, Henry
- Vadose Zone Journal, Vol. 5, Issue 1
Evidence of subsurface preferential flow using soil hydrologic monitoring in the Shale Hills catchment
journal, December 2007
- Lin, H.; Zhou, X.
- European Journal of Soil Science, Vol. 59, Issue 1
Interactions Between Biogeochemistry and Hydrologic Systems
journal, November 2009
- Lohse, Kathleen A.; Brooks, Paul D.; McIntosh, Jennifer C.
- Annual Review of Environment and Resources, Vol. 34, Issue 1
A high-resolution simulation of groundwater and surface water over most of the continental US with the integrated hydrologic model ParFlow v3
journal, January 2015
- Maxwell, R. M.; Condon, L. E.; Kollet, S. J.
- Geoscientific Model Development, Vol. 8, Issue 3
Global products of vegetation leaf area and fraction absorbed PAR from year one of MODIS data
journal, November 2002
- Myneni, R. B.; Hoffman, S.; Knyazikhin, Y.
- Remote Sensing of Environment, Vol. 83, Issue 1-2
An integrated modelling framework of catchment-scale ecohydrological processes: 1. Model description and tests over an energy-limited watershed: A CATCHMENT-SCALE ECOHYDROLOGICAL MODEL
journal, January 2013
- Niu, Guo-Yue; Paniconi, Claudio; Troch, Peter A.
- Ecohydrology, Vol. 7, Issue 2
The community Noah land surface model with multiparameterization options (Noah-MP): 1. Model description and evaluation with local-scale measurements
journal, January 2011
- Niu, Guo-Yue; Yang, Zong-Liang; Mitchell, Kenneth E.
- Journal of Geophysical Research, Vol. 116, Issue D12
Which way do you lean? Using slope aspect variations to understand Critical Zone processes and feedbacks: Which way do you lean?
journal, February 2018
- Pelletier, Jon D.; Barron-Gafford, Greg A.; Gutiérrez-Jurado, Hugo
- Earth Surface Processes and Landforms, Vol. 43, Issue 5
A semidiscrete finite volume formulation for multiprocess watershed simulation: MULTIPROCESS WATERSHED SIMULATION
journal, August 2007
- Qu, Yizhong; Duffy, Christopher J.
- Water Resources Research, Vol. 43, Issue 8
The global carbon dioxide flux in soil respiration and its relationship to vegetation and climate
journal, January 1992
- Raich, J. W.; Schlesinger, W. H.
- Tellus B: Chemical and Physical Meteorology, Vol. 44, Issue 2
Solar position algorithm for solar radiation applications
journal, January 2004
- Reda, Ibrahim; Andreas, Afshin
- Solar Energy, Vol. 76, Issue 5
Plants in water-controlled ecosystems: active role in hydrologic processes and response to water stress
journal, July 2001
- Rodriguez-Iturbe, I.; Porporato, A.; Laio, F.
- Advances in Water Resources, Vol. 24, Issue 7
Evaluating controls on coupled hydrologic and vegetation dynamics in a humid continental climate watershed using a subsurface-land surface processes model: EVALUATING CONTROLS ON HYDROLOGIC AND VEGETATION DYNAMICS
journal, May 2013
- Shen, Chaopeng; Niu, Jie; Phanikumar, Mantha S.
- Water Resources Research, Vol. 49, Issue 5
A process-based, distributed hydrologic model based on a large-scale method for surface–subsurface coupling
journal, December 2010
- Shen, Chaopeng; Phanikumar, Mantha S.
- Advances in Water Resources, Vol. 33, Issue 12
The fan of influence of streams and channel feedbacks to simulated land surface water and carbon dynamics: CHANNEL FEEDBACKS TO SIMULATED LAND SURFACE DYNAMICS
journal, February 2016
- Shen, Chaopeng; Riley, William J.; Smithgall, Kurt R.
- Water Resources Research, Vol. 52, Issue 2
Simulating high-resolution soil moisture patterns in the Shale Hills watershed using a land surface hydrologic model: Simulating High-Resolution Soil Moisture Patterns
journal, August 2015
- Shi, Yuning; Baldwin, Douglas C.; Davis, Kenneth J.
- Hydrological Processes, Vol. 29, Issue 21
Development of a Coupled Land Surface Hydrologic Model and Evaluation at a Critical Zone Observatory
journal, October 2013
- Shi, Yuning; Davis, Kenneth J.; Duffy, Christopher J.
- Journal of Hydrometeorology, Vol. 14, Issue 5
Evaluation of the Parameter Sensitivities of a Coupled Land Surface Hydrologic Model at a Critical Zone Observatory
journal, February 2014
- Shi, Yuning; Davis, Kenneth J.; Zhang, Fuqing
- Journal of Hydrometeorology, Vol. 15, Issue 1
Parameter estimation of a physically based land surface hydrologic model using the ensemble Kalman filter: A synthetic experiment: PARAMETER ESTIMATION USING ENKF
journal, January 2014
- Shi, Yuning; Davis, Kenneth J.; Zhang, Fuqing
- Water Resources Research, Vol. 50, Issue 1
Parameter estimation of a physically-based land surface hydrologic model using an ensemble Kalman filter: A multivariate real-data experiment
journal, September 2015
- Shi, Yuning; Davis, Kenneth J.; Zhang, Fuqing
- Advances in Water Resources, Vol. 83
A Scale-Consistent Terrestrial Systems Modeling Platform Based on COSMO, CLM, and ParFlow
journal, September 2014
- Shrestha, P.; Sulis, M.; Masbou, M.
- Monthly Weather Review, Vol. 142, Issue 9
Stream Lengths and Basin Areas in Topologically Random Channel Networks
journal, July 1969
- Shreve, Ronald L.
- The Journal of Geology, Vol. 77, Issue 4
Variability in aboveground carbon driven by slope aspect and curvature in an eastern deciduous forest, USA
journal, February 2017
- Smith, Lauren A.; Eissenstat, David M.; Kaye, Margot W.
- Canadian Journal of Forest Research, Vol. 47, Issue 2
RHESSys: Regional Hydro-Ecologic Simulation System—An Object-Oriented Approach to Spatially Distributed Modeling of Carbon, Water, and Nutrient Cycling
journal, December 2004
- Tague, C. L.; Band, L. E.
- Earth Interactions, Vol. 8, Issue 19
Modeling and measuring the effects of disturbance history and climate on carbon and water budgets in evergreen needleleaf forests
journal, December 2002
- Thornton, P. E.; Law, B. E.; Gholz, Henry L.
- Agricultural and Forest Meteorology, Vol. 113, Issue 1-4
Ecosystem model spin-up: Estimating steady state conditions in a coupled terrestrial carbon and nitrogen cycle model
journal, November 2005
- Thornton, Peter E.; Rosenbloom, Nan A.
- Ecological Modelling, Vol. 189, Issue 1-2
Estimating solar radiation on slopes of arbitrary aspect
journal, August 2001
- Tian, Y. Q.; Davies-Colley, R. J.; Gong, P.
- Agricultural and Forest Meteorology, Vol. 109, Issue 1
An object-oriented framework for distributed hydrologic and geomorphic modeling using triangulated irregular networks
journal, October 2001
- Tucker, Gregory E.; Lancaster, Stephen T.; Gasparini, Nicole M.
- Computers & Geosciences, Vol. 27, Issue 8
A Closed-form Equation for Predicting the Hydraulic Conductivity of Unsaturated Soils1
journal, January 1980
- van Genuchten, M. Th.
- Soil Science Society of America Journal, Vol. 44, Issue 5
A continental phenology model for monitoring vegetation responses to interannual climatic variability
journal, June 1997
- White, Michael A.; Thornton, Peter E.; Running, Steven W.
- Global Biogeochemical Cycles, Vol. 11, Issue 2
Parameterization and Sensitivity Analysis of the BIOME–BGC Terrestrial Ecosystem Model: Net Primary Production Controls
journal, January 2000
- White, Michael A.; Thornton, Peter E.; Running, Steven W.
- Earth Interactions, Vol. 4, Issue 3
The role of macropores and multi-resolution soil survey datasets for distributed surface–subsurface flow modeling
journal, August 2014
- Yu, Xuan; Duffy, Christopher; Baldwin, Doug C.
- Journal of Hydrology, Vol. 516
Assessing five evolving microbial enzyme models against field measurements from a semiarid savannah-What are the mechanisms of soil respiration pulses?
journal, September 2014
- Zhang, Xia; Niu, Guo-Yue; Elshall, Ahmed S.
- Geophysical Research Letters, Vol. 41, Issue 18
Fully-coupled hydrologic processes for modeling landscape evolution
journal, August 2016
- Zhang, Yu; Slingerland, Rudy; Duffy, Christopher
- Environmental Modelling & Software, Vol. 82
Works referencing / citing this record:
Soil CO 2 and O 2 Concentrations Illuminate the Relative Importance of Weathering and Respiration to Seasonal Soil Gas Fluctuations
journal, July 2019
- Hodges, Caitlin; Kim, Hyojin; Brantley, Susan L.
- Soil Science Society of America Journal, Vol. 83, Issue 4
Streamflow Generation From Catchments of Contrasting Lithologies: The Role of Soil Properties, Topography, and Catchment Size
journal, November 2019
- Xiao, Dacheng; Shi, Yuning; Brantley, Susan L.
- Water Resources Research, Vol. 55, Issue 11
The Effect of Lithology and Agriculture at the Susquehanna Shale Hills Critical Zone Observatory
journal, January 2018
- Li, Li; DiBiase, Roman A.; Del Vecchio, Joanmarie
- Vadose Zone Journal, Vol. 17, Issue 1
Susquehanna Shale Hills Critical Zone Observatory: Shale Hills in the Context of Shaver's Creek Watershed
journal, January 2018
- Brantley, Susan L.; White, Tim; West, Nicole
- Vadose Zone Journal, Vol. 17, Issue 1