Performance evaluation of Bragg coherent diffraction imaging

Öztürk, H.; Huang, X.; Yan, H.; Robinson, I. K.; Noyan, I. C.; Chu, Y. S.

doi:10.1088/1367-2630/aa83a9

Title: Performance evaluation of Bragg coherent diffraction imaging

Abstract

In this study, we present a numerical framework for modeling three-dimensional (3D) diffraction data in Bragg coherent diffraction imaging (Bragg CDI) experiments and evaluating the quality of obtained 3D complex-valued real-space images recovered by reconstruction algorithms under controlled conditions. The approach is used to systematically explore the performance and the detection limit of this phase-retrieval-based microscopy tool. The numerical investigation suggests that the superb performance of Bragg CDI is achieved with an oversampling ratio above 30 and a detection dynamic range above 6 orders. The observed performance degradation subject to the data binning processes is also studied. Furthermore, this numerical tool can be used to optimize experimental parameters and has the potential to significantly improve the throughput of Bragg CDI method.

Authors:: Öztürk, H.; Huang, X.; Yan, H.; Robinson, I. K.; Noyan, I. C.; Chu, Y. S.

Publication Date:: Sun Oct 01 00:00:00 EDT 2017

Research Org.:: Brookhaven National Laboratory (BNL), Upton, NY (United States)

Sponsoring Org.:: USDOE Office of Science (SC), Basic Energy Sciences (BES)

OSTI Identifier:: 1396388

Alternate Identifier(s):: OSTI ID: 1433956

Report Number(s):: BNL-203477-2018-JAAM
Journal ID: ISSN 1367-2630

Grant/Contract Number:: AC02-98CH10886; LDRD-21690; SC0012704

Resource Type:: Published Article

Journal Name:: New Journal of Physics

Additional Journal Information:: Journal Name: New Journal of Physics Journal Volume: 19 Journal Issue: 10; Journal ID: ISSN 1367-2630

Publisher:: IOP Publishing

Country of Publication:: United Kingdom

Language:: English

Subject:: 36 MATERIALS SCIENCE; phase retrieval; x-ray microscopy; x-ray imaging; synchrotron radiation

Citation Formats


                    Öztürk, H., Huang, X., Yan, H., Robinson, I. K., Noyan, I. C., and Chu, Y. S. Performance evaluation of Bragg coherent diffraction imaging.  United Kingdom: N. p., 2017. 
Web.  doi:10.1088/1367-2630/aa83a9.

Copy to clipboard


                    Öztürk, H., Huang, X., Yan, H., Robinson, I. K., Noyan, I. C., & Chu, Y. S. Performance evaluation of Bragg coherent diffraction imaging.  United Kingdom.  https://doi.org/10.1088/1367-2630/aa83a9

Copy to clipboard


                    Öztürk, H., Huang, X., Yan, H., Robinson, I. K., Noyan, I. C., and Chu, Y. S. Sun .  
"Performance evaluation of Bragg coherent diffraction imaging".  United Kingdom.  https://doi.org/10.1088/1367-2630/aa83a9.

Copy to clipboard


                    
@article{osti_1396388,

  title        = {Performance evaluation of Bragg coherent diffraction imaging},

  author       = {Öztürk, H. and Huang, X. and Yan, H. and Robinson, I. K. and Noyan, I. C. and Chu, Y. S.},

  abstractNote = {In this study, we present a numerical framework for modeling three-dimensional (3D) diffraction data in Bragg coherent diffraction imaging (Bragg CDI) experiments and evaluating the quality of obtained 3D complex-valued real-space images recovered by reconstruction algorithms under controlled conditions. The approach is used to systematically explore the performance and the detection limit of this phase-retrieval-based microscopy tool. The numerical investigation suggests that the superb performance of Bragg CDI is achieved with an oversampling ratio above 30 and a detection dynamic range above 6 orders. The observed performance degradation subject to the data binning processes is also studied. Furthermore, this numerical tool can be used to optimize experimental parameters and has the potential to significantly improve the throughput of Bragg CDI method.},

  doi          = {10.1088/1367-2630/aa83a9},

  journal      = {New Journal of Physics},

  number       = 10,

  volume       = 19,

  place        = {United Kingdom},

  year         = {Sun Oct 01 00:00:00 EDT 2017},

  month        = {Sun Oct 01 00:00:00 EDT 2017}

}

Copy to clipboard

Journal Article:

Free Publicly Available Full Text

Publisher's Version of Record
https://doi.org/10.1088/1367-2630/aa83a9

Other availability

Search WorldCat to find libraries that may hold this journal

Citation Metrics:

Cited by: 14 works

Citation information provided by
Web of Science

Save / Share:

Export Metadata

Save to My Library

Works referenced in this record:

The Diffraction of X-Rays by Small Crystalline Particles
journal, November 1939

Patterson, A. L.
Physical Review, Vol. 56, Issue 10
DOI: 10.1103/PhysRev.56.972

Three-dimensional mapping of a deformation field inside a nanocrystal
journal, July 2006

Pfeifer, Mark A.; Williams, Garth J.; Vartanyants, Ivan A.
Nature, Vol. 442, Issue 7098
DOI: 10.1038/nature04867

Three-Dimensional Imaging of Microstructure in Au Nanocrystals
journal, April 2003

Williams, G. J.; Pfeifer, M. A.; Vartanyants, I. A.
Physical Review Letters, Vol. 90, Issue 17
DOI: 10.1103/PhysRevLett.90.175501

Coherent X-ray diffraction imaging of strain at the nanoscale
journal, April 2009

Robinson, Ian; Harder, Ross
Nature Materials, Vol. 8, Issue 4
DOI: 10.1038/nmat2400

Three-dimensional imaging of strain in a single ZnO nanorod
journal, December 2009

Newton, Marcus C.; Leake, Steven J.; Harder, Ross
Nature Materials, Vol. 9, Issue 2
DOI: 10.1038/nmat2607

Differential stress induced by thiol adsorption on facetted nanocrystals
journal, September 2011

Watari, Moyu; McKendry, Rachel A.; Vögtli, Manuel
Nature Materials, Vol. 10, Issue 11
DOI: 10.1038/nmat3124

Avalanching strain dynamics during the hydriding phase transformation in individual palladium nanoparticles
journal, December 2015

Ulvestad, A.; Welland, M. J.; Collins, S. S. E.
Nature Communications, Vol. 6, Issue 1
DOI: 10.1038/ncomms10092

Three-dimensional imaging of dislocation dynamics during the hydriding phase transformation
journal, January 2017

Ulvestad, A.; Welland, M. J.; Cha, W.
Nature Materials, Vol. 16, Issue 5
DOI: 10.1038/NMAT4842

Core–shell strain structure of zeolite microcrystals
journal, July 2013

Cha, Wonsuk; Jeong, Nak Cheon; Song, Sanghoon
Nature Materials, Vol. 12, Issue 8
DOI: 10.1038/nmat3698

Three-dimensional imaging of dislocation propagation during crystal growth and dissolution
journal, June 2015

Clark, Jesse N.; Ihli, Johannes; Schenk, Anna S.
Nature Materials, Vol. 14, Issue 8
DOI: 10.1038/nmat4320

Strain-relief by single dislocation loops in calcite crystals grown on self-assembled monolayers
journal, June 2016

Ihli, Johannes; Clark, Jesse N.; Côté, Alexander S.
Nature Communications, Vol. 7, Issue 1
DOI: 10.1038/ncomms11878

Ultrafast Three-Dimensional Imaging of Lattice Dynamics in Individual Gold Nanocrystals
journal, May 2013

Clark, J. N.; Beitra, L.; Xiong, G.
Science, Vol. 341, Issue 6141
DOI: 10.1126/science.1236034

Imaging transient melting of a nanocrystal using an X-ray laser
journal, June 2015

Clark, Jesse N.; Beitra, Loren; Xiong, Gang
Proceedings of the National Academy of Sciences, Vol. 112, Issue 24
DOI: 10.1073/pnas.1417678112

Radiation damage in a micron-sized protein crystal studied via reciprocal space mapping and Bragg coherent diffractive imaging
journal, July 2015

Coughlan, H. D.; Darmanin, C.; Phillips, N. W.
Structural Dynamics, Vol. 2, Issue 4
DOI: 10.1063/1.4919641

Bragg coherent diffraction imaging and metrics for radiation damage in protein micro-crystallography
journal, January 2017

Coughlan, H. D.; Darmanin, C.; Kirkwood, H. J.
Journal of Synchrotron Radiation, Vol. 24, Issue 1
DOI: 10.1107/S1600577516017525

Coherent diffraction imaging of nanoscale strain evolution in a single crystal under high pressure
journal, April 2013

Yang, Wenge; Huang, Xiaojing; Harder, Ross
Nature Communications, Vol. 4, Issue 1
DOI: 10.1038/ncomms2661

Deformation Twinning of a Silver Nanocrystal under High Pressure
journal, October 2015

Huang, Xiaojing; Yang, Wenge; Harder, Ross
Nano Letters, Vol. 15, Issue 11
DOI: 10.1021/acs.nanolett.5b03568

Single Particle Nanomechanics in Operando Batteries via Lensless Strain Mapping
journal, August 2014

Ulvestad, Andrew; Singer, Andrej; Cho, Hyung-Man
Nano Letters, Vol. 14, Issue 9
DOI: 10.1021/nl501858u

Topological defect dynamics in operando battery nanoparticles
journal, June 2015

Ulvestad, A.; Singer, A.; Clark, J. N.
Science, Vol. 348, Issue 6241
DOI: 10.1126/science.aaa1313

In situ strain evolution during a disconnection event in a battery nanoparticle
journal, January 2015

Ulvestad, Andrew; Clark, Jesse N.; Singer, Andrej
Physical Chemistry Chemical Physics, Vol. 17, Issue 16
DOI: 10.1039/C5CP00372E

3D lattice distortions and defect structures in ion-implanted nano-crystals
journal, April 2017

Hofmann, Felix; Tarleton, Edmund; Harder, Ross J.
Scientific Reports, Vol. 7, Issue 1
DOI: 10.1038/srep45993

Three-dimensional high-resolution quantitative microscopy of extended crystals
journal, September 2011

Godard, P.; Carbone, G.; Allain, M.
Nature Communications, Vol. 2, Issue 1
DOI: 10.1038/ncomms1569

Quantitative Nanoscale Imaging of Lattice Distortions in Epitaxial Semiconductor Heterostructures Using Nanofocused X-ray Bragg Projection Ptychography
journal, September 2012

Hruszkewycz, S. O.; Holt, M. V.; Murray, C. E.
Nano Letters, Vol. 12, Issue 10
DOI: 10.1021/nl303201w

Three-dimensional Bragg coherent diffraction imaging of an extended ZnO crystal
journal, June 2012

Huang, Xiaojing; Harder, Ross; Leake, Steven
Journal of Applied Crystallography, Vol. 45, Issue 4
DOI: 10.1107/S0021889812018900

Bragg x-ray ptychography of a silicon crystal: Visualization of the dislocation strain field and the production of a vortex beam
journal, March 2013

Takahashi, Yukio; Suzuki, Akihiro; Furutaku, Shin
Physical Review B, Vol. 87, Issue 12
DOI: 10.1103/PhysRevB.87.121201

Imaging Local Polarization in Ferroelectric Thin Films by Coherent X-Ray Bragg Projection Ptychography
journal, April 2013

Hruszkewycz, S. O.; Highland, M. J.; Holt, M. V.
Physical Review Letters, Vol. 110, Issue 17, Article No. 177601
DOI: 10.1103/PhysRevLett.110.177601

Strain in a silicon-on-insulator nanostructure revealed by 3D x-ray Bragg ptychography
journal, May 2015

Chamard, V.; Allain, M.; Godard, P.
Scientific Reports, Vol. 5, Issue 1
DOI: 10.1038/srep09827

High-resolution three-dimensional structural microscopy by single-angle Bragg ptychography
journal, November 2016

Hruszkewycz, S. O.; Allain, M.; Holt, M. V.
Nature Materials, Vol. 16, Issue 2
DOI: 10.1038/nmat4798

Phase retrieval from the magnitude of the Fourier transforms of nonperiodic objects
journal, January 1998

Miao, J.; Sayre, D.; Chapman, H. N.
Journal of the Optical Society of America A, Vol. 15, Issue 6
DOI: 10.1364/JOSAA.15.001662

Diffractive imaging of nonperiodic materials with future coherent X-ray sources
journal, August 2004

Shen, Qun; Bazarov, Ivan; Thibault, Pierre
Journal of Synchrotron Radiation, Vol. 11, Issue 5
DOI: 10.1107/S0909049504016772

Signal-to-noise and radiation exposure considerations in conventional and diffraction x-ray microscopy
journal, January 2009

Huang, Xiaojing; Miao, Huijie; Steinbrener, Jan
Optics Express, Vol. 17, Issue 16
DOI: 10.1364/OE.17.013541

Framework for three-dimensional coherent diffraction imaging by focused beam x-ray Bragg ptychography
journal, January 2011

Hruszkewycz, Stephan O.; Holt, Martin V.; Tripathi, Ash
Optics Letters, Vol. 36, Issue 12
DOI: 10.1364/OL.36.002227

Phase retrieval algorithms: a comparison
journal, January 1982

Fienup, J. R.
Applied Optics, Vol. 21, Issue 15
DOI: 10.1364/AO.21.002758

Phase retrieval by iterated projections
journal, January 2003

Elser, Veit
Journal of the Optical Society of America A, Vol. 20, Issue 1
DOI: 10.1364/JOSAA.20.000040

Extinction in X-ray crystallography
journal, March 1947

Lonsdale, Kathleen
Mineralogical Magazine and Journal of the Mineralogical Society, Vol. 28, Issue 196
DOI: 10.1180/minmag.1947.028.196.04

High-resolution ab initio three-dimensional x-ray diffraction microscopy
journal, January 2006

Chapman, Henry N.; Barty, Anton; Marchesini, Stefano
Journal of the Optical Society of America A, Vol. 23, Issue 5
DOI: 10.1364/JOSAA.23.001179

X-ray image reconstruction from a diffraction pattern alone
journal, October 2003

Marchesini, S.; He, H.; Chapman, H. N.
Physical Review B, Vol. 68, Issue 14
DOI: 10.1103/PhysRevB.68.140101

Phase-retrieval stagnation problems and solutions
journal, January 1986

Fienup, J. R.; Wackerman, C. C.
Journal of the Optical Society of America A, Vol. 3, Issue 11
DOI: 10.1364/JOSAA.3.001897

Sampling in x-ray ptychography
journal, May 2013

Edo, T. B.; Batey, D. J.; Maiden, A. M.
Physical Review A, Vol. 87, Issue 5
DOI: 10.1103/PhysRevA.87.053850

Medipix2: A 64-k pixel readout chip with 55-μm square elements working in single photon counting mode
journal, October 2002

Llopart, X.; Campbell, M.; Dinapoli, R.
IEEE Transactions on Nuclear Science, Vol. 49, Issue 5
DOI: 10.1109/TNS.2002.803788

Eiger: a single-photon counting x-ray detector
journal, May 2014

Johnson, I.; Bergamaschi, A.; Billich, H.
Journal of Instrumentation, Vol. 9, Issue 05
DOI: 10.1088/1748-0221/9/05/C05032

Controlling the aliasing by zero-padding in the digital calculation of the scalar diffraction
journal, January 2012

Liu, Jung-Ping
Journal of the Optical Society of America A, Vol. 29, Issue 9
DOI: 10.1364/JOSAA.29.001956

Works referencing / citing this record: