Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

Xu, Ling; Naylor, Dan; Dong, Zhaobin; Simmons, Tuesday; Pierroz, Grady; Hixson, Kim K.; Kim, Young -Mo; Zink, Erika M.; Engbrecht, Kristin M.; Wang, Yi; Gao, Cheng; DeGraaf, Stephanie; Madera, Mary A.; Sievert, Julie A.; Hollingsworth, Joy; Birdseye, Devon; Scheller, Henrik V.; Hutmacher, Robert; Dahlberg, Jeffery; Jansson, Christer; Taylor, John W.; Lemaux, Peggy G.; Coleman-Derr, Devin

doi:10.1073/pnas.1717308115

Title: Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

Journal Article · 16 April 2018 · Proceedings of the National Academy of Sciences of the United States of America

DOI: https://doi.org/10.1073/pnas.1717308115 · OSTI ID:1433401

Xu, Ling ^[1]; Naylor, Dan ^[1];

^[1]; Simmons, Tuesday ^[1]; Pierroz, Grady ^[1]; Hixson, Kim K. ^[2];

^[2]; Zink, Erika M. ^[2]; Engbrecht, Kristin M. ^[2]; Wang, Yi ^[1];

^[3]; DeGraaf, Stephanie ^[3]; Madera, Mary A. ^[3]; Sievert, Julie A. ^[4]; Hollingsworth, Joy ^[4]; Birdseye, Devon ^[5]; Scheller, Henrik V. ^[6]; Hutmacher, Robert ^[7]; Dahlberg, Jeffery ^[4];

^[2] more »

Univ. of California, Berkeley, CA (United States); US Dept. of Agriculture-Agricultural Research Service, Albany, CA (United States)
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Univ. of California, Berkeley, CA (United States)
Kearney Agricultural Research & Extension Center, Parlier, CA (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Univ. of California, Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Univ. of California, Davis, Five Points, CA (United States)

Here, drought stress is a major obstacle to crop productivity, and the severity and frequency of drought are expected to increase in the coming century. Certain root-associated bacteria have been shown to mitigate the negative effects of drought stress on plant growth, and manipulation of the crop microbiome is an emerging strategy for overcoming drought stress in agricultural systems, yet the effect of drought on the development of the root microbiome is poorly understood. Through 16S rRNA amplicon and metatranscriptome sequencing, as well as root metabolomics, we demonstrate that drought delays the development of the early sorghum root microbiome and causes increased abundance and activity of monoderm bacteria, which lack an outer cell membrane and contain thick cell walls. Our data suggest that altered plant metabolism and increased activity of bacterial ATP-binding cassette (ABC) transporter genes are correlated with these shifts in community composition. Finally, inoculation experiments with monoderm isolates indicate that increased colonization of the root during drought can positively impact plant growth. Collectively, these results demonstrate the role that drought plays in restructuring the root microbiome and highlight the importance of temporal sampling when studying plant-associated microbiomes.

View Journal Article

Cite

Export

Save

Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: DOA-0001207; CRIS-203021430-008-00D; AC05-76RL01830; AC02-05CH11231

OSTI ID:: 1433401

Alternate ID(s):: OSTI ID: 1437150; OSTI ID: 1457007

Report Number(s):: PNNL-SA-131119

Journal Information:: Proceedings of the National Academy of Sciences of the United States of America, Vol. 115, Issue 18; ISSN 0027-8424

Publisher:: National Academy of Sciences, Washington, DC (United States)Copyright Statement

Country of Publication:: United States

Language:: English

References (69)

Changes through time: integrating microorganisms into the study of succession Fierer, Noah; Nemergut, Diana; Knight, Rob Research in Microbiology, Vol. 161, Issue 8 https://doi.org/10.1016/j.resmic.2010.06.002	journal	October 2010
Stable Coexistence in a Fluctuating Environment: an Experimental Demonstration Descamps-Julien, Blandine; Gonzalez, Andrew Ecology, Vol. 86, Issue 10 https://doi.org/10.1890/04-1700	journal	October 2005
Control of Drought Stress in Wheat Using Plant-Growth-Promoting Bacteria Kasim, Wedad A.; Osman, Mohammed E.; Omar, Mohammed N. Journal of Plant Growth Regulation, Vol. 32, Issue 1 https://doi.org/10.1007/s00344-012-9283-7	journal	June 2012
Teichuronic acid of the cell wall of Actinoplanes brasiliensis Shashkov, Alexander S.; Kochanowski, Helga; Kozlova, Yuliya I. Biochimica et Biophysica Acta (BBA) - General Subjects, Vol. 1201, Issue 3 https://doi.org/10.1016/0304-4165(94)90059-0	journal	December 1994
Fundamentals of Microbial Community Resistance and Resilience Shade, Ashley; Peter, Hannes; Allison, Steven D. Frontiers in Microbiology, Vol. 3 https://doi.org/10.3389/fmicb.2012.00417	journal	January 2012
A crop water stress index and time threshold for automatic irrigation scheduling of grain sorghum O'Shaughnessy, Susan A.; Evett, Steven R.; Colaizzi, Paul D. Agricultural Water Management, Vol. 107 https://doi.org/10.1016/j.agwat.2012.01.018	journal	May 2012
Application of natural blends of phytochemicals derived from the root exudates of Arabidopsis to the soil reveal that phenolic-related compounds predominantly modulate the soil microbiome. Badri, Dayakar V.; Chaparro, Jacqueline M.; Zhang, Ruifu Journal of Biological Chemistry, Vol. 288, Issue 42 https://doi.org/10.1074/jbc.a112.433300	journal	October 2013
Structure, variation, and assembly of the root-associated microbiomes of rice Edwards, Joseph; Johnson, Cameron; Santos-Medellín, Christian Proceedings of the National Academy of Sciences, Vol. 112, Issue 8 https://doi.org/10.1073/pnas.1414592112	journal	January 2015
Differential expression analysis for sequence count data Anders, Simon; Huber, Wolfgang Genome Biology, Vol. 11, Issue 10 https://doi.org/10.1186/gb-2010-11-10-r106	journal	October 2010
Glycerol-3-phosphate transporter of Escherichia coli: Structure, function and regulation Lemieux, M. Joanne; Huang, Yafei; Wang, Da-Neng Research in Microbiology, Vol. 155, Issue 8 https://doi.org/10.1016/j.resmic.2004.05.016	journal	October 2004
Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes Santos-Medellín, Christian; Edwards, Joseph; Liechty, Zachary mBio, Vol. 8, Issue 4 https://doi.org/10.1128/mBio.00764-17	journal	July 2017
Global patterns of drought recovery Schwalm, Christopher R.; Anderegg, William R. L.; Michalak, Anna M. Nature, Vol. 548, Issue 7666 https://doi.org/10.1038/nature23021	journal	August 2017
Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes Gupta, Radhey S. Antonie van Leeuwenhoek, Vol. 100, Issue 2 https://doi.org/10.1007/s10482-011-9616-8	journal	June 2011
The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L. Estendorfer, Jennifer; Stempfhuber, Barbara; Haury, Paula Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.00930	journal	June 2017
Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat Kawasaki, Akitomo; Donn, Suzanne; Ryan, Peter R. PLOS ONE, Vol. 11, Issue 10 https://doi.org/10.1371/journal.pone.0164533	journal	October 2016
Comparison of canopy temperature-based water stress indices for maize DeJonge, Kendall C.; Taghvaeian, Saleh; Trout, Thomas J. Agricultural Water Management, Vol. 156 https://doi.org/10.1016/j.agwat.2015.03.023	journal	July 2015
Bacterial-mediated drought tolerance: Current and future prospects Ngumbi, Esther; Kloepper, Joseph Applied Soil Ecology, Vol. 105 https://doi.org/10.1016/j.apsoil.2016.04.009	journal	September 2016
Conceptual Synthesis in Community Ecology Vellend, Mark The Quarterly Review of Biology, Vol. 85, Issue 2 https://doi.org/10.1086/652373	journal	June 2010
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant S., Lundberg, Derek; L., Dangl, Jeffery; G., Del Rio, Tijana The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/18y1-ek17	text	January 2016
Rhizosphere microbiome assemblage is affected by plant development Chaparro, Jacqueline M.; Badri, Dayakar V.; Vivanco, Jorge M. The ISME Journal, Vol. 8, Issue 4 https://doi.org/10.1038/ismej.2013.196	journal	November 2013
Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics Redford, Amanda J.; Fierer, Noah Microbial Ecology, Vol. 58, Issue 1 https://doi.org/10.1007/s00248-009-9495-y	journal	February 2009
Polyene antibiotic biosynthesis gene clusters Aparicio, J. F.; Caffrey, P.; Gil, J. A. Applied Microbiology and Biotechnology, Vol. 61, Issue 3 https://doi.org/10.1007/s00253-002-1183-5	journal	December 2002
Exploring interactions of plant microbiomes Andreote, Fernando Dini; Gumiere, Thiago; Durrer, Ademir Scientia Agricola, Vol. 71, Issue 6 https://doi.org/10.1590/0103-9016-2014-0195	journal	December 2014
Defining the core Arabidopsis thaliana root microbiome E., Ley, Ruth; Julien, Tremblay,; L., Dangl, Jeffery The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/w03e-5q36	text	January 2012
Severe drought conditions modify the microbial community structure, size and activity in amended and unamended soils Hueso, S.; García, C.; Hernández, T. Soil Biology and Biochemistry, Vol. 50 https://doi.org/10.1016/j.soilbio.2012.03.026	journal	July 2012
Application of Natural Blends of Phytochemicals Derived from the Root Exudates of Arabidopsis to the Soil Reveal That Phenolic-related Compounds Predominantly Modulate the Soil Microbiome Badri, Dayakar V.; Chaparro, Jacqueline M.; Zhang, Ruifu Journal of Biological Chemistry, Vol. 288, Issue 7 https://doi.org/10.1074/jbc.M112.433300	journal	January 2013
YSK2 Type Dehydrin (SbDhn1) from Sorghum bicolor Showed Improved Protection under High Temperature and Osmotic Stress Condition Halder, Tanmoy; Upadhyaya, Gouranga; Ray, Sudipta Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.00918	journal	May 2017
Plant dehydrins and stress tolerance: versatile proteins for complex mechanisms Hanin, Moez; Brini, Faïçal; Ebel, Chantal Plant Signaling & Behavior, Vol. 6, Issue 10 https://doi.org/10.4161/psb.6.10.17088	journal	October 2011
A phylum level perspective on bacterial cell envelope architecture Sutcliffe, Iain C. Trends in Microbiology, Vol. 18, Issue 10 https://doi.org/10.1016/j.tim.2010.06.005	journal	October 2010
Temporal Stability of the Human Skin Microbiome Oh, Julia; Byrd, Allyson L.; Park, Morgan Cell, Vol. 165, Issue 4 https://doi.org/10.1016/j.cell.2016.04.008	journal	May 2016
Membrane-induced folding of the plant-stress protein Lti30. Eriksson, Sylvia; Eremina, Nadejda; Barth, Andreas Plant Physiology https://doi.org/10.1104/pp.15.01531	journal	April 2016
Function of Dislocations in Cell Walls and Membranes Harris, W. F.; Scriven, L. E. Nature, Vol. 228, Issue 5274 https://doi.org/10.1038/228827a0	journal	November 1970
Host lifestyle affects human microbiota on daily timescales David, Lawrence A.; Materna, Arne C.; Friedman, Jonathan Genome Biology, Vol. 15, Issue 7 https://doi.org/10.1186/gb-2014-15-7-r89	journal	January 2014
General mechanisms of drought response and their application in drought resistance improvement in plants Fang, Yujie; Xiong, Lizhong Cellular and Molecular Life Sciences, Vol. 72, Issue 4 https://doi.org/10.1007/s00018-014-1767-0	journal	October 2014
Microbial enzymatic responses to drought and to nitrogen addition in a southern California grassland Alster, Charlotte J.; German, Donovan P.; Lu, Ying Soil Biology and Biochemistry, Vol. 64 https://doi.org/10.1016/j.soilbio.2013.03.034	journal	September 2013
Characterization and expression of dehydrins in water-stressed Sorghum bicolor Wood, Andrew J.; Goldsbrough, Peter B. Physiologia Plantarum, Vol. 99, Issue 1 https://doi.org/10.1034/j.1399-3054.1997.990120.x	journal	January 1997
Bacterial Root Microbiome of Plants Growing in Oil Sands Reclamation Covers Mitter, Eduardo K.; de Freitas, J. Renato; Germida, James J. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.00849	journal	May 2017
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species Coleman-Derr, Devin; Desgarennes, Damaris; Fonseca-Garcia, Citlali New Phytologist, Vol. 209, Issue 2 https://doi.org/10.1111/nph.13697	journal	October 2015
The Root-Associated Microbial Community of the World’s Highest Growing Vascular Plants Angel, Roey; Conrad, Ralf; Dvorsky, Miroslav Microbial Ecology, Vol. 72, Issue 2 https://doi.org/10.1007/s00248-016-0779-8	journal	May 2016
Specificity of root microbiomes in native-grown Nicotiana attenuata and plant responses to UVB increase Deinococcus colonization Santhanam, Rakesh; Oh, Youngjoo; Kumar, Ramesh Molecular Ecology, Vol. 26, Issue 9 https://doi.org/10.1111/mec.14049	journal	March 2017
Drought and host selection influence bacterial community dynamics in the grass root microbiome Naylor, Dan; DeGraaf, Stephanie; Purdom, Elizabeth The ISME Journal, Vol. 11, Issue 12 https://doi.org/10.1038/ismej.2017.118	journal	July 2017
A decade of irrigation transforms the soil microbiome of a semi-arid pine forest Hartmann, Martin; Brunner, Ivano; Hagedorn, Frank Molecular Ecology, Vol. 26, Issue 4 https://doi.org/10.1111/mec.13995	journal	January 2017
Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait: Root bacteria protect plants from drought Rolli, Eleonora; Marasco, Ramona; Vigani, Gianpiero Environmental Microbiology, Vol. 17, Issue 2 https://doi.org/10.1111/1462-2920.12439	journal	March 2014
Sporulation, bacterial cell envelopes and the origin of life Tocheva, Elitza I.; Ortega, Davi R.; Jensen, Grant J. Nature Reviews Microbiology, Vol. 14, Issue 8 https://doi.org/10.1038/nrmicro.2016.85	journal	June 2016
Transcriptomic analysis of female and male gonads in juvenile snakeskin gourami (Trichopodus pectoralis) Boonanuntanasarn, Surintorn; Jangprai, Araya; Na-Nakorn, Uthairat Scientific Reports, Vol. 10, Issue 1 https://doi.org/10.1038/s41598-020-61738-0	journal	March 2020
Assembly and ecological function of the root microbiome across angiosperm plant species Fitzpatrick, Connor R.; Copeland, Julia; Wang, Pauline W. Proceedings of the National Academy of Sciences, Vol. 115, Issue 6 https://doi.org/10.1073/pnas.1717617115	journal	January 2018
Deciphering composition and function of the root microbiome of a legume plant Hartman, Kyle; van der Heijden, Marcel GA; Roussely-Provent, Valexia Microbiome, Vol. 5, Issue 1 https://doi.org/10.1186/s40168-016-0220-z	journal	January 2017
The Impact of Beneficial Plant-Associated Microbes on Plant Phenotypic Plasticity Goh, Chooi-Hua; Veliz Vallejos, Debora F.; Nicotra, Adrienne B. Journal of Chemical Ecology, Vol. 39, Issue 7 https://doi.org/10.1007/s10886-013-0326-8	journal	July 2013
Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions Chaparro, Jacqueline M.; Badri, Dayakar V.; Bakker, Matthew G. PLoS ONE, Vol. 8, Issue 2 https://doi.org/10.1371/journal.pone.0055731	journal	February 2013
Influence of extreme weather disasters on global crop production Lesk, Corey; Rowhani, Pedram; Ramankutty, Navin The University of British Columbia https://doi.org/10.14288/1.0376077	text	January 2019
Defining the core Arabidopsis thaliana root microbiome Lundberg, Derek S.; Lebeis, Sarah L.; Paredes, Sur Herrera Nature, Vol. 488, Issue 7409 https://doi.org/10.1038/nature11237	journal	August 2012
Stimulation of Plant Growth and Drought Tolerance by Native Microorganisms (AM Fungi and Bacteria) from Dry Environments: Mechanisms Related to Bacterial Effectiveness Marulanda, Adriana; Barea, José-Miguel; Azcón, Rosario Journal of Plant Growth Regulation, Vol. 28, Issue 2 https://doi.org/10.1007/s00344-009-9079-6	journal	February 2009
Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism Bouskill, Nicholas J.; Wood, Tana E.; Baran, Richard Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.00525	journal	April 2016
Reactive Oxygen Species and the Cardiovascular System Taverne, Yannick J. H. J.; Bogers, Ad J. J. C.; Duncker, Dirk J. Oxidative Medicine and Cellular Longevity, Vol. 2013 https://doi.org/10.1155/2013/862423	journal	January 2013
Molecules to Ecosystems: Actinomycete Natural Products In situ Behie, Scott W.; Bonet, Bailey; Zacharia, Vineetha M. Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.02149	journal	January 2017
Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities Zgadzaj, Rafal; Garrido-Oter, Ruben; Jensen, Dorthe Bodker Proceedings of the National Academy of Sciences, Vol. 113, Issue 49 https://doi.org/10.1073/pnas.1616564113	journal	November 2016
Characterization and expression of dehydrins in water-stressed Sorghum bicolor Wood, Andrew J.; Goldsbrough, Peter B. Physiologia Plantarum, Vol. 99, Issue 1 https://doi.org/10.1111/j.1399-3054.1997.tb03442.x	journal	January 1997
Bacterial reference genes for gene expression studies by RT-qPCR: survey and analysis Rocha, Danilo J. P.; Santos, Carolina S.; Pacheco, Luis G. C. Antonie van Leeuwenhoek, Vol. 108, Issue 3 https://doi.org/10.1007/s10482-015-0524-1	journal	July 2015
Drought Stress and Root-Associated Bacterial Communities Naylor, Dan; Coleman-Derr, Devin Frontiers in Plant Science, Vol. 8 https://doi.org/10.3389/fpls.2017.02223	journal	January 2018
Differential expression analysis for sequence count data Anders, Simon; Huber, Wolfgang Nature Precedings https://doi.org/10.1038/npre.2010.4282.2	journal	April 2010
Climate variability has a stabilizing effect on the coexistence of prairie grasses Adler, P. B.; HilleRisLambers, J.; Kyriakidis, P. C. Proceedings of the National Academy of Sciences, Vol. 103, Issue 34 https://doi.org/10.1073/pnas.0600599103	journal	August 2006
Increased plant productivity and decreased microbial respiratory C loss by plant growth-promoting rhizobacteria under elevated CO2 Nie, Ming; Bell, Colin; Wallenstein, Matthew D. Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep09212	journal	March 2015
Water deficiency at different developmental stages of Glycine max can improve drought tolerance Kron, Alan Panaia; Souza, Gustavo Maia; Ribeiro, Rafael Vasconcelos Bragantia, Vol. 67, Issue 1 https://doi.org/10.1590/S0006-87052008000100005	journal	January 2008
Biogeographic Patterns of Arbuscular Mycorrhizal Fungal Communities Along a Land-Use Intensification Gradient in the Subtropical Atlantic Forest Biome Ceola, Gessiane; Goss-Souza, Dennis; Alves, Joana Microbial Ecology https://doi.org/10.1007/s00248-021-01721-y	journal	March 2021
Analysis of Temporal Gene Expression during Bacillus subtilis Spore Germination and Outgrowth Keijser, B. J. F.; Ter Beek, A.; Rauwerda, H. Journal of Bacteriology, Vol. 189, Issue 9 https://doi.org/10.1128/JB.01736-06	journal	February 2007
Influence of extreme weather disasters on global crop production Lesk, Corey; Rowhani, Pedram; Ramankutty, Navin Nature, Vol. 529, Issue 7584 https://doi.org/10.1038/nature16467	journal	January 2016
Uncovering the Horseshoe Effect in Microbial Analyses Morton, James T.; Toran, Liam; Edlund, Anna mSystems, Vol. 2, Issue 1 https://doi.org/10.1128/mSystems.00166-16	journal	February 2017
Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient Campbell, Barbara J.; Kirchman, David L. The ISME Journal, Vol. 7, Issue 1 https://doi.org/10.1038/ismej.2012.93	journal	August 2012
Model plant systems in salinity and drought stress proteomics studies: a perspective on Arabidopsis and Sorghum Ngara, R.; Ndimba, B. K. Plant Biology, Vol. 16, Issue 6 https://doi.org/10.1111/plb.12247	journal	September 2014

Cited By (38)

Interactions between plants and soil shaping the root microbiome under abiotic stress Hartman, Kyle; Tringe, Susannah G. Biochemical Journal, Vol. 476, Issue 19 https://doi.org/10.1042/bcj20180615	journal	October 2019
Identification of beneficial and detrimental bacteria that impact sorghum responses to drought using multi-scale and multi-system microbiome comparisons Qi, Mingsheng; Berry, Jeffrey; Bart, Rebecca Zenodo https://doi.org/10.5281/zenodo.5703837	dataset	January 2021
Additional file 4 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590654	image	January 2021
Additional file 3 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590651	image	January 2021
A critical assessment of the feature selection methods used for biomarker discovery in current metaproteomics studies Tang, Jing; Wang, Yunxia; Fu, Jianbo Briefings in Bioinformatics, Vol. 21, Issue 4 https://doi.org/10.1093/bib/bbz061	journal	June 2019
Additional file 6 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590663	image	January 2021
Plant Stage, Not Drought Stress, Determines the Effect of Cultivars on Bacterial Community Diversity in the Rhizosphere of Broomcorn Millet (Panicum miliaceum L.) Na, Xiaofan; Cao, Xiaoning; Ma, Caixia Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.00828	journal	April 2019
Additional file 5 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590657	image	January 2021
Additional file 15 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590639.v1	dataset	January 2021
Additional file 9 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590672	dataset	January 2021
Plant growth rate and nitrogen uptake shape rhizosphere bacterial community composition and activity in an agricultural field Emmett, Bryan D.; Buckley, Daniel H.; Drinkwater, Laurie E. New Phytologist, Vol. 225, Issue 2 https://doi.org/10.1111/nph.16171	journal	October 2019
Additional file 10 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590624.v1	dataset	January 2021
Additional file 12 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590630.v1	dataset	January 2021
Strong succession in arbuscular mycorrhizal fungal communities Gao, Cheng; Montoya, Liliam; Xu, Ling The ISME Journal, Vol. 13, Issue 1 https://doi.org/10.1038/s41396-018-0264-0	journal	August 2018
Host-mediated microbiome engineering (HMME) of drought tolerance in the wheat rhizosphere Jochum, Michael D.; McWilliams, Kelsey L.; Pierson, Elizabeth A. PLOS ONE, Vol. 14, Issue 12 https://doi.org/10.1371/journal.pone.0225933	journal	December 2019
The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response Finkel, Omri M.; Salas-González, Isai; Castrillo, Gabriel PLOS Biology, Vol. 17, Issue 11 https://doi.org/10.1371/journal.pbio.3000534	journal	November 2019
Additional file 11 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590627.v1	dataset	January 2021
Plant Host-Associated Mechanisms for Microbial Selection Jones, Piet; Garcia, Benjamin J.; Furches, Anna Frontiers in Plant Science, Vol. 10 https://doi.org/10.3389/fpls.2019.00862	journal	July 2019
A foliar Epichloë endophyte and soil moisture modified belowground arbuscular mycorrhizal fungal biodiversity associated with Achnatherum inebrians Zhong, Rui; Xia, Chao; Ju, Yawen Plant and Soil https://doi.org/10.1007/s11104-019-04365-7	journal	November 2019
Impact of abiotic stressors on native rhizospheric bacterial community of Cajanus cajan Anand, Gautam; Bisaria, Virendra S.; Sharma, Shilpi Journal of Basic Microbiology, Vol. 60, Issue 1 https://doi.org/10.1002/jobm.201900378	journal	November 2019
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses Varoquaux, Nelle; Cole, Benjamin; Gao, Cheng Proceedings of the National Academy of Sciences, Vol. 116, Issue 52 https://doi.org/10.1073/pnas.1907500116	journal	December 2019
Testing sustained soil-to-soil contact as an approach for limiting the abiotic influence of source soils during experimental microbiome transfer Trexler, Ryan V.; Bell, Terrence H. FEMS Microbiology Letters, Vol. 366, Issue 19 https://doi.org/10.1093/femsle/fnz228	journal	October 2019
Additional file 8 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590669.v1	dataset	January 2021
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics Gao, Cheng; Montoya, Liliam; Xu, Ling Nature Communications, Vol. 11, Issue 1 https://doi.org/10.1038/s41467-019-13913-9	journal	January 2020
Additional file 7 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590666.v1	dataset	January 2021
Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk Berens, Matthias L.; Wolinska, Katarzyna W.; Spaepen, Stijn Proceedings of the National Academy of Sciences, Vol. 116, Issue 6 https://doi.org/10.1073/pnas.1817233116	journal	January 2019
Root microbiota assembly and adaptive differentiation among European Arabidopsis populations Thiergart, Thorsten; Durán, Paloma; Ellis, Thomas Nature Ecology & Evolution, Vol. 4, Issue 1 https://doi.org/10.1038/s41559-019-1063-3	journal	December 2019
Additional file 13 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590633	dataset	January 2021
Additional file 2 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590648.v1	image	January 2021
Duckweed hosts a taxonomically similar bacterial assemblage as the terrestrial leaf microbiome Acosta, Kenneth; Xu, Jenny; Gilbert, Sarah PLOS ONE, Vol. 15, Issue 2 https://doi.org/10.1371/journal.pone.0228560	journal	February 2020
Endophytic bacterial communities in peels and pulp of five root vegetables Kõiv, Viia; Arbo, Krõõt; Maiväli, Ülo PLOS ONE, Vol. 14, Issue 1 https://doi.org/10.1371/journal.pone.0210542	journal	January 2019
Why Evolve Reliance on the Microbiome for Timing of Ontogeny? Metcalf, C. Jessica E.; Henry, Lucas P.; Rebolleda-Gómez, María mBio, Vol. 10, Issue 5 https://doi.org/10.1128/mbio.01496-19	journal	October 2019
The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response G., Castrillo,; P. J. P. L., Teixeira,; S., Spaepen, Public Library of Science https://doi.org/10.17615/khqf-c670	text	January 2019
Additional file 1 of Host genotype-specific rhizosphere fungus enhances drought resistance in wheat Yue, Hong; Sun, Xuming; Wang, Tingting figshare https://doi.org/10.6084/m9.figshare.25333388	dataset	January 2024
Experimental warming alters the community composition, diversity, and N ₂ fixation activity of peat moss ( Sphagnum fallax ) microbiomes Carrell, Alyssa A.; Kolton, Max; Glass, Jennifer B. Global Change Biology, Vol. 25, Issue 9 https://doi.org/10.1111/gcb.14715	journal	May 2019
Plasticity of a holobiont: desiccation induces fasting-like metabolism within the lichen microbiota Cernava, Tomislav; Aschenbrenner, Ines Aline; Soh, Jung The ISME Journal, Vol. 13, Issue 2 https://doi.org/10.1038/s41396-018-0286-7	journal	October 2018
Belowground microbial communities respond to water deficit and are shaped by decades of maize hybrid breeding Wang, Peng; Marsh, Ellen L.; Kruger, Greg Environmental Microbiology, Vol. 22, Issue 3 https://doi.org/10.1111/1462-2920.14701	journal	June 2019
Additional file 14 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590636	dataset	January 2021

Similar Records

Drought Shifts Sorghum Root Metabolite and Microbiome Profiles and Enriches for Pipecolic Acid

Journal Article · 2023 · Phytobiomes Journal · OSTI ID:2342073

Caddell, Daniel F.; Pettinga, Dean; Louie, Katherine; +8 more

Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons

Journal Article · 2022 · The ISME Journal · OSTI ID:1866641

Qi, Mingsheng; Berry, Jeffrey C.; Veley, Kira W.; +13 more

Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum

Journal Article · 2023 · mSystems · OSTI ID:2251531

Chai, Yen Ning; Qi, Yunhui; Goren, Emily; +6 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
sorghum
root
microbiome
drought
metatranscriptome

Title: Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

Citation Formats

References (69)

Cited By (38)

Similar Records

Related Subjects