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Title: Graphene quantum dots: effect of size, composition and curvature on their assembly

Abstract

Graphene Quantum Dots (GQDs) are a relatively new class of molecules that have ignited tremendous research interest due to their extraordinary and tunable optical, electrical, chemical and structural properties. In this paper, we report a molecular-level elucidation of the key mechanisms and physical–chemical factors controlling the assembly and stability of nanostructures formed by GQDs in an aqueous environment, using molecular dynamics simulations. We observe the general tendency to form small aggregates and three recurring configurations, one of them with a single layer of water separating two GQDs. The type and characteristics of the structure are mostly determined by the hydrophobicity of the GQDs as well as the steric hindrance of the dangling groups. The composition of the terminal groups plays a key role in determining the configuration of the GQDs, which is also markedly affected by the formation of clusters. Notably, the aggregated GQDs assume strongly correlated shapes and, in some cases, display a radically different conformation distribution compared to single molecules. This cooperative effect prolongs the lifetime of the GQD configurations and can explain the observed persistence of chiral conformations that are only marginally more stable than their specular images.

Authors:
ORCiD logo [1];  [2]; ORCiD logo [3]
  1. Univ. of Michigan, Ann Arbor, MI (United States). Mechanical Engineering
  2. Univ. of Michigan, Ann Arbor, MI (United States). Chemical Engineering
  3. Univ. of Michigan, Ann Arbor, MI (United States). Mechanical Engineering, Chemical Engineering and Biophysics program and Macromolecular Science and Engineering
Publication Date:
Research Org.:
Univ. of Michigan, Ann Arbor, MI (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1430214
Grant/Contract Number:  
SC0002619
Resource Type:
Accepted Manuscript
Journal Name:
RSC Advances
Additional Journal Information:
Journal Volume: 7; Journal Issue: 29; Journal ID: ISSN 2046-2069
Publisher:
Royal Society of Chemistry
Country of Publication:
United States
Language:
English
Subject:
77 NANOSCIENCE AND NANOTECHNOLOGY; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

Elvati, Paolo, Baumeister, Elizabeth, and Violi, Angela. Graphene quantum dots: effect of size, composition and curvature on their assembly. United States: N. p., 2017. Web. doi:10.1039/c7ra01029j.
Elvati, Paolo, Baumeister, Elizabeth, & Violi, Angela. Graphene quantum dots: effect of size, composition and curvature on their assembly. United States. https://doi.org/10.1039/c7ra01029j
Elvati, Paolo, Baumeister, Elizabeth, and Violi, Angela. Tue . "Graphene quantum dots: effect of size, composition and curvature on their assembly". United States. https://doi.org/10.1039/c7ra01029j. https://www.osti.gov/servlets/purl/1430214.
@article{osti_1430214,
title = {Graphene quantum dots: effect of size, composition and curvature on their assembly},
author = {Elvati, Paolo and Baumeister, Elizabeth and Violi, Angela},
abstractNote = {Graphene Quantum Dots (GQDs) are a relatively new class of molecules that have ignited tremendous research interest due to their extraordinary and tunable optical, electrical, chemical and structural properties. In this paper, we report a molecular-level elucidation of the key mechanisms and physical–chemical factors controlling the assembly and stability of nanostructures formed by GQDs in an aqueous environment, using molecular dynamics simulations. We observe the general tendency to form small aggregates and three recurring configurations, one of them with a single layer of water separating two GQDs. The type and characteristics of the structure are mostly determined by the hydrophobicity of the GQDs as well as the steric hindrance of the dangling groups. The composition of the terminal groups plays a key role in determining the configuration of the GQDs, which is also markedly affected by the formation of clusters. Notably, the aggregated GQDs assume strongly correlated shapes and, in some cases, display a radically different conformation distribution compared to single molecules. This cooperative effect prolongs the lifetime of the GQD configurations and can explain the observed persistence of chiral conformations that are only marginally more stable than their specular images.},
doi = {10.1039/c7ra01029j},
journal = {RSC Advances},
number = 29,
volume = 7,
place = {United States},
year = {Tue Mar 21 00:00:00 EDT 2017},
month = {Tue Mar 21 00:00:00 EDT 2017}
}

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Works referenced in this record:

Photo-Fenton Reaction of Graphene Oxide: A New Strategy to Prepare Graphene Quantum Dots for DNA Cleavage
journal, July 2012

  • Zhou, Xuejiao; Zhang, Yan; Wang, Chong
  • ACS Nano, Vol. 6, Issue 8
  • DOI: 10.1021/nn301629v

Carbon nanodots: synthesis, properties and applications
journal, January 2012

  • Li, Haitao; Kang, Zhenhui; Liu, Yang
  • Journal of Materials Chemistry, Vol. 22, Issue 46
  • DOI: 10.1039/c2jm34690g

Facile Synthetic Method for Pristine Graphene Quantum Dots and Graphene Oxide Quantum Dots: Origin of Blue and Green Luminescence
journal, May 2013


Hydrothermal Route for Cutting Graphene Sheets into Blue-Luminescent Graphene Quantum Dots
journal, February 2010

  • Pan, Dengyu; Zhang, Jingchun; Li, Zhen
  • Advanced Materials, Vol. 22, Issue 6, p. 734-738
  • DOI: 10.1002/adma.200902825

Electrochemical Preparation of Luminescent Graphene Quantum Dots from Multiwalled Carbon Nanotubes
journal, August 2012

  • Shinde, Dhanraj B.; Pillai, Vijayamohanan K.
  • Chemistry - A European Journal, Vol. 18, Issue 39
  • DOI: 10.1002/chem.201201043

Scalable molecular dynamics with NAMD
journal, January 2005

  • Phillips, James C.; Braun, Rosemary; Wang, Wei
  • Journal of Computational Chemistry, Vol. 26, Issue 16, p. 1781-1802
  • DOI: 10.1002/jcc.20289

Transforming C60 molecules into graphene quantum dots
journal, March 2011

  • Lu, Jiong; Yeo, Pei Shan Emmeline; Gan, Chee Kwan
  • Nature Nanotechnology, Vol. 6, Issue 4
  • DOI: 10.1038/nnano.2011.30

Electric Field Effect in Atomically Thin Carbon Films
journal, October 2004


General definition of ring puckering coordinates
journal, March 1975

  • Cremer, D.; Pople, J. A.
  • Journal of the American Chemical Society, Vol. 97, Issue 6
  • DOI: 10.1021/ja00839a011

One-step preparation of nitrogen-doped graphenequantum dots from oxidized debris of graphene oxide
journal, January 2013

  • Hu, Chaofan; Liu, Yingliang; Yang, Yunhua
  • J. Mater. Chem. B, Vol. 1, Issue 1
  • DOI: 10.1039/C2TB00189F

Graphene Oxide Nanocolloids
journal, December 2010

  • Luo, Jiayan; Cote, Laura J.; Tung, Vincent C.
  • Journal of the American Chemical Society, Vol. 132, Issue 50
  • DOI: 10.1021/ja1078943

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
journal, March 1977

  • Ryckaert, Jean-Paul; Ciccotti, Giovanni; Berendsen, Herman J. C.
  • Journal of Computational Physics, Vol. 23, Issue 3
  • DOI: 10.1016/0021-9991(77)90098-5

The uptake mechanism and biocompatibility of graphene quantum dots with human neural stem cells
journal, January 2014

  • Shang, Weihu; Zhang, Xiaoyan; Zhang, Mo
  • Nanoscale, Vol. 6, Issue 11
  • DOI: 10.1039/C3NR06433F

Strongly green-photoluminescent graphene quantum dots for bioimaging applications
journal, January 2011

  • Zhu, Shoujun; Zhang, Junhu; Qiao, Chunyan
  • Chemical Communications, Vol. 47, Issue 24
  • DOI: 10.1039/c1cc11122a

Chiral Graphene Quantum Dots
journal, January 2016


Facile synthesis of water-soluble, highly fluorescent graphene quantum dots as a robust biological label for stem cells
journal, January 2012

  • Zhang, Mo; Bai, Linling; Shang, Weihu
  • Journal of Materials Chemistry, Vol. 22, Issue 15
  • DOI: 10.1039/c2jm16835a

One-step and high yield simultaneous preparation of single- and multi-layer graphene quantum dots from CX-72 carbon black
journal, January 2012

  • Dong, Yongqiang; Chen, Congqiang; Zheng, Xinting
  • Journal of Materials Chemistry, Vol. 22, Issue 18
  • DOI: 10.1039/c2jm30658a

Chirality transfer from graphene quantum dots
journal, January 2016

  • Vázquez-Nakagawa, M.; Rodríguez-Pérez, L.; Herranz, M. A.
  • Chemical Communications, Vol. 52, Issue 4
  • DOI: 10.1039/C5CC08890A

Automation of the CHARMM General Force Field (CGenFF) I: Bond Perception and Atom Typing
journal, November 2012

  • Vanommeslaeghe, K.; MacKerell, A. D.
  • Journal of Chemical Information and Modeling, Vol. 52, Issue 12
  • DOI: 10.1021/ci300363c

Surface oxides on carbon and their analysis: a critical assessment
journal, February 2002


An Electrochemical Avenue to Green-Luminescent Graphene Quantum Dots as Potential Electron-Acceptors for Photovoltaics
journal, December 2010


Automation of the CHARMM General Force Field (CGenFF) II: Assignment of Bonded Parameters and Partial Atomic Charges
journal, November 2012

  • Vanommeslaeghe, K.; Raman, E. Prabhu; MacKerell, A. D.
  • Journal of Chemical Information and Modeling, Vol. 52, Issue 12
  • DOI: 10.1021/ci3003649

Raman Spectrum of Graphene and Graphene Layers
journal, October 2006


Graphene-Quantum-Dot Assembled Nanotubes: A New Platform for Efficient Raman Enhancement
journal, February 2012

  • Cheng, Huhu; Zhao, Yang; Fan, Yueqiong
  • ACS Nano, Vol. 6, Issue 3
  • DOI: 10.1021/nn204289t

Chaotic Dirac Billiard in Graphene Quantum Dots
journal, April 2008

  • Ponomarenko, L. A.; Schedin, F.; Katsnelson, M. I.
  • Science, Vol. 320, Issue 5874, p. 356-358
  • DOI: 10.1126/science.1154663

Direct Observation of Quantum-Confined Graphene-Like States and Novel Hybrid States in Graphene Oxide by Transient Spectroscopy
journal, September 2013


Revealing the tunable photoluminescence properties of graphene quantum dots
journal, January 2014

  • Sk, Mahasin Alam; Ananthanarayanan, Arundithi; Huang, Lin
  • J. Mater. Chem. C, Vol. 2, Issue 34
  • DOI: 10.1039/C4TC01191K

Graphene Quantum Dots Derived from Carbon Fibers
journal, January 2012

  • Peng, Juan; Gao, Wei; Gupta, Bipin Kumar
  • Nano Letters, Vol. 12, Issue 2
  • DOI: 10.1021/nl2038979

VMD: Visual molecular dynamics
journal, February 1996


Focusing on luminescent graphene quantum dots: current status and future perspectives
journal, January 2013

  • Li, Lingling; Wu, Gehui; Yang, Guohai
  • Nanoscale, Vol. 5, Issue 10
  • DOI: 10.1039/c3nr33849e

Works referencing / citing this record:

Environmental effects on the charge transfer properties of Graphene quantum dot based interfaces
journal, December 2018

  • Osella, Silvio; Knippenberg, Stefan
  • International Journal of Quantum Chemistry, Vol. 119, Issue 10
  • DOI: 10.1002/qua.25882

Enzymatic Degradation of Graphene Quantum Dots by Human Peroxidases
journal, December 2019


Uricase based fluorometric determination of uric acid based on the use of graphene quantum dot@silver core-shell nanocomposites
journal, December 2017


A synthesis of graphene quantum dots/hollow TiO2 nanosphere composites for enhancing visible light photocatalytic activity
journal, December 2019

  • Zhang, Hongjuan; Mo, Zunli; Pei, Hebing
  • Journal of Materials Science: Materials in Electronics, Vol. 31, Issue 2
  • DOI: 10.1007/s10854-019-02657-3

Anti-biofilm Activity of Graphene Quantum Dots via Self-Assembly with Bacterial Amyloid Proteins
posted_content, February 2019

  • Wang, Yichun; Kadiyala, Usha; Qu, Zhibei
  • ACS Nano
  • DOI: 10.1101/550285

Anti-Biofilm Activity of Graphene Quantum Dots via Self-Assembly with Bacterial Amyloid Proteins
journal, March 2019