Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome

Carlson, Craig H.; Choi, Yongwook; Chan, Agnes P.; Serapiglia, Michelle J.; Town, Christopher D.; Smart, Lawrence B.

doi:10.1093/gbe/evx174

Title: Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome

Journal Article · 01 September 2017 · Genome Biology and Evolution

DOI: https://doi.org/10.1093/gbe/evx174 · OSTI ID:1426176

Carlson, Craig H. ^[1]; Choi, Yongwook ^[2]; Chan, Agnes P. ^[2]; Serapiglia, Michelle J. ^[1]; Town, Christopher D. ^[2];

^[1]

Cornell Univ., Geneva, NY (United States). New York State Agricultural Experiment Station, School of Integrative Plant Science, Horticulture Section
J. Craig Venter Inst., Rockville, MD (United States)

The heritability of gene expression is critical in understanding heterosis and is dependent on allele-specific regulation by local and remote factors in the genome. We used RNA-Seq to test whether variation in gene expression among F₁ and F₂ intraspecific Salix purpurea progeny is attributable to cis- and trans-regulatory divergence. We assessed the mode of inheritance based on gene expression levels and allele-specific expression for F1 and F2 intraspecific progeny in two distinct tissue types: shoot tip and stem internode. In addition, we explored sexually dimorphic patterns of inheritance and regulatory divergence among F₁ progeny individuals. We show that in S. purpurea intraspecific crosses, gene expression inheritance largely exhibits a maternal dominant pattern, regardless of tissue type or pedigree. A significantly greater number of cis- and trans-regulated genes coincided with upregulation of the maternal parent allele in the progeny, irrespective of the magnitude, whereas the paternal allele was higher expressed for genes showing cis × trans or compensatory regulation. Importantly, consistent with previous genetic mapping results for sex in shrub willow, we have delimited sex-biased gene expression to a 2 Mb pericentromeric region on S. purpurea chr15 and further refined the sex determination region. Lastly, altogether, our results offer insight into the inheritance of gene expression in S. purpurea as well as evidence of sexually dimorphic expression which may have contributed to the evolution of dioecy in Salix.

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Research Organization:: Cornell Univ., Ithaca, NY (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: SC0008375

OSTI ID:: 1426176

Journal Information:: Genome Biology and Evolution, Vol. 9, Issue 9; ISSN 1759-6653

Publisher:: Society for Molecular Biology and EvolutionCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 26 works

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NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T Siriwardana, Chamindika L.; Gnesutta, Nerina; Kumimoto, Roderick W. PLOS Genetics, Vol. 12, Issue 12 https://doi.org/10.1371/journal.pgen.1006496	journal	December 2016
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