Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

Eichorst, Stephanie A.; Trojan, Daniela; Roux, Simon; Herbold, Craig; Rattei, Thomas; Woebken, Dagmar

doi:10.1111/1462-2920.14043

Title: Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments

Journal Article · 11 March 2018 · Environmental Microbiology

DOI: https://doi.org/10.1111/1462-2920.14043 · OSTI ID:1425534

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Division of Microbial Ecology, Department of Microbiology and Ecosystem Science Research Network “Chemistry Meets Biology”, University of Vienna Vienna Austria
Department of Energy Joint Genome Institute Walnut Creek CA USA
Division of Computational Systems Biology, Department of Microbiology and Ecosystem Science Research Network “Chemistry Meets Biology”, University of Vienna Vienna Austria

Summary Members of the phylum Acidobacteria are abundant and ubiquitous across soils. We performed a large‐scale comparative genome analysis spanning subdivisions 1, 3, 4, 6, 8 and 23 ( n = 24) with the goal to identify features to help explain their prevalence in soils and understand their ecophysiology. Our analysis revealed that bacteriophage integration events along with transposable and mobile elements influenced the structure and plasticity of these genomes. Low‐ and high‐affinity respiratory oxygen reductases were detected in multiple genomes, suggesting the capacity for growing across different oxygen gradients. Among many genomes, the capacity to use a diverse collection of carbohydrates, as well as inorganic and organic nitrogen sources (such as via extracellular peptidases), was detected – both advantageous traits in environments with fluctuating nutrient environments. We also identified multiple soil acidobacteria with the potential to scavenge atmospheric concentrations of H ₂ , now encompassing mesophilic soil strains within the subdivision 1 and 3, in addition to a previously identified thermophilic strain in subdivision 4. This large‐scale acidobacteria genome analysis reveal traits that provide genomic, physiological and metabolic versatility, presumably allowing flexibility and versatility in the challenging and fluctuating soil environment.

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Research Organization:: Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1425534

Journal Information:: Environmental Microbiology, Journal Name: Environmental Microbiology Journal Issue: 3 Vol. 20; ISSN 1462-2912

Publisher:: Wiley-BlackwellCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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