Enhancement of Environmental Hazard Degradation in the Presence of Lignin: a Proteomics Study

Sun, Su; Xie, Shangxian; Cheng, Yanbing; Yu, Hongbo; Zhao, Honglu; Li, Muzi; Li, Xiaotong; Zhang, Xiaoyu; Yuan, Joshua S.; Dai, Susie Y.

doi:10.1038/s41598-017-10132-4

Title: Enhancement of Environmental Hazard Degradation in the Presence of Lignin: a Proteomics Study

Journal Article · 12 September 2017 · Scientific Reports

DOI: https://doi.org/10.1038/s41598-017-10132-4 · OSTI ID:1425151

Sun, Su ^[1]; Xie, Shangxian ^[2]; Cheng, Yanbing ^[3]; Yu, Hongbo ^[2]; Zhao, Honglu ^[4]; Li, Muzi ^[3]; Li, Xiaotong ^[3]; Zhang, Xiaoyu ^[4]; Yuan, Joshua S. ^[3]; Dai, Susie Y. ^[5]

Huazhong Univ. of Science and Technology, Wuhan (China). School of Life Science and Technology; Texas A & M Univ., College Station, TX (United States). Dept. of Veterinary Pathology
Huazhong Univ. of Science and Technology, Wuhan (China). School of Life Science and Technology; Texas A & M Univ., College Station, TX (United States). Synthetic and Systems Biology Innovation Hub. Dept. of Plant Pathology and Microbiology
Texas A & M Univ., College Station, TX (United States). Synthetic and Systems Biology Innovation Hub. Dept. of Plant Pathology and Microbiology
Huazhong Univ. of Science and Technology, Wuhan (China). School of Life Science and Technology
Texas A & M Univ., College Station, TX (United States). Dept. of Veterinary Pathology. Office of Texas State Chemist

Proteomics studies of fungal systems have progressed dramatically based on the availability of more fungal genome sequences in recent years. Different proteomics strategies have been applied toward characterization of fungal proteome and revealed important gene functions and proteome dynamics. Presented here is the application of shot-gun proteomic technology to study the bio-remediation of environmental hazards by white-rot fungus. Lignin, a naturally abundant component of the plant biomass, is discovered to promote the degradation of Azo dye by white-rot fungus Irpex lacteus CD2 in the lignin/dye/fungus system. Shotgun proteomics technique was used to understand degradation mechanism at the protein level for the lignin/dye/fungus system. Our proteomics study can identify about two thousand proteins (one third of the predicted white-rot fungal proteome) in a single experiment, as one of the most powerful proteomics platforms to study the fungal system to date. The study shows a significant enrichment of oxidoreduction functional category under the dye/lignin combined treatment. An in vitro validation is performed and supports our hypothesis that the synergy of Fenton reaction and manganese peroxidase might play an important role in DR5B dye degradation. The results could guide the development of effective bioremediation strategies and efficient lignocellulosic biomass conversion.

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Research Organization:: Texas A & M Univ., College Station, TX (United States); Huazhong Univ. of Science and Technology, Wuhan (China)

Sponsoring Organization:: USDOE Office of Energy Efficiency and Renewable Energy (EERE), Office of Sustainable Transportation and Fuels. Bioenergy Technologies Office (BETO); National Natural Science Foundation of China (NSFC); National High-tech Research and Development Program of China; Major State Basic Research Development Program of China; USDOE Office of Energy Efficiency and Renewable Energy (EERE), Office of Sustainable Transportation. Bioenergy Technologies Office (BETO)

Grant/Contract Number:: EE0006112; EE0007104; 31170104; 2012AA101805; 2014CB138301

OSTI ID:: 1425151

Alternate ID(s):: OSTI ID: 2525911

Journal Information:: Scientific Reports, Vol. 7; ISSN 2045-2322

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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