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Title: Setaria Comes of Age: Meeting Report on the Second International Setaria Genetics Conference

Abstract

Setaria viridis is an emerging model for cereal and bioenergy grasses because of its short stature, rapid life cycle and expanding genetic and genomic toolkits. Its close phylogenetic relationship with economically important crops such as maize and sorghum positions Setaria as an ideal model system for accelerating discovery and characterization of crop genes that control agronomically important traits. The Second International Setaria Genetics Conference was held on March 6–8, 2017 at the Donald Danforth Plant Science Center, St. Louis, MO, United States to discuss recent technological breakthroughs and research directions in Setaria (presentation abstracts can be downloaded at https://www.brutnelllab.org/setaria). Here, we highlight topics presented in the conference including inflorescence architecture, C 4 photosynthesis and abiotic stress. Genetic and genomic toolsets including germplasm, mutant populations, transformation and gene editing technologies are also discussed. Since the last meeting in 2014, the Setaria community has matured greatly in the quality of research being conducted. Outreach and increased communication with maize and other plant communities will allow broader adoption of Setaria as a model system to translate fundamental discovery research to crop improvement.

Authors:
 [1];  [1];  [1]
  1. Donald Danforth Plant Science Center, St. Louis, MO (United States)
Publication Date:
Research Org.:
Donald Danforth Plant Science Center, St. Louis, MO (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER) (SC-23). Biological Systems Science Division; National Science Foundation (NSF); USDA National Inst. of Food and Agriculture (NIFA)
OSTI Identifier:
1423879
Grant/Contract Number:  
SC0008769; IOS-1413824; 2014-67012-22269
Resource Type:
Accepted Manuscript
Journal Name:
Frontiers in Plant Science
Additional Journal Information:
Journal Volume: 8; Journal ID: ISSN 1664-462X
Publisher:
Frontiers Research Foundation
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 54 ENVIRONMENTAL SCIENCES

Citation Formats

Zhu, Chuanmei, Yang, Jiani, and Shyu, Christine. Setaria Comes of Age: Meeting Report on the Second International Setaria Genetics Conference. United States: N. p., 2017. Web. doi:10.3389/fpls.2017.01562.
Zhu, Chuanmei, Yang, Jiani, & Shyu, Christine. Setaria Comes of Age: Meeting Report on the Second International Setaria Genetics Conference. United States. doi:10.3389/fpls.2017.01562.
Zhu, Chuanmei, Yang, Jiani, and Shyu, Christine. Thu . "Setaria Comes of Age: Meeting Report on the Second International Setaria Genetics Conference". United States. doi:10.3389/fpls.2017.01562. https://www.osti.gov/servlets/purl/1423879.
@article{osti_1423879,
title = {Setaria Comes of Age: Meeting Report on the Second International Setaria Genetics Conference},
author = {Zhu, Chuanmei and Yang, Jiani and Shyu, Christine},
abstractNote = {Setaria viridis is an emerging model for cereal and bioenergy grasses because of its short stature, rapid life cycle and expanding genetic and genomic toolkits. Its close phylogenetic relationship with economically important crops such as maize and sorghum positions Setaria as an ideal model system for accelerating discovery and characterization of crop genes that control agronomically important traits. The Second International Setaria Genetics Conference was held on March 6–8, 2017 at the Donald Danforth Plant Science Center, St. Louis, MO, United States to discuss recent technological breakthroughs and research directions in Setaria (presentation abstracts can be downloaded at https://www.brutnelllab.org/setaria). Here, we highlight topics presented in the conference including inflorescence architecture, C4 photosynthesis and abiotic stress. Genetic and genomic toolsets including germplasm, mutant populations, transformation and gene editing technologies are also discussed. Since the last meeting in 2014, the Setaria community has matured greatly in the quality of research being conducted. Outreach and increased communication with maize and other plant communities will allow broader adoption of Setaria as a model system to translate fundamental discovery research to crop improvement.},
doi = {10.3389/fpls.2017.01562},
journal = {Frontiers in Plant Science},
number = ,
volume = 8,
place = {United States},
year = {2017},
month = {9}
}

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Works referenced in this record:

Sparse panicle1 is required for inflorescence development in Setaria viridis and maize
journal, April 2017


Setaria viridis as a Model System to Advance Millet Genetics and Genomics
journal, November 2016


Setaria viridis floral-dip: A simple and rapid Agrobacterium-mediated transformation method
journal, June 2015

  • Martins, Polyana Kelly; Nakayama, Thiago Jonas; Ribeiro, Ana Paula
  • Biotechnology Reports, Vol. 6
  • DOI: 10.1016/j.btre.2015.02.006

Grasses suppress shoot-borne roots to conserve water during drought
journal, July 2016

  • Sebastian, Jose; Yee, Muh-Ching; Goudinho Viana, Willian
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 31
  • DOI: 10.1073/pnas.1604021113

Reference genome sequence of the model plant Setaria
journal, May 2012

  • Bennetzen, Jeffrey L.; Schmutz, Jeremy; Wang, Hao
  • Nature Biotechnology, Vol. 30, Issue 6
  • DOI: 10.1038/nbt.2196

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems
journal, August 2015

  • Rellán-Álvarez, Rubén; Lobet, Guillaume; Lindner, Heike
  • eLife, Vol. 4
  • DOI: 10.7554/eLife.07597

Setaria: A Food Crop and Translational Research Model for C4 Grasses
journal, December 2016

  • Pant, Shankar R.; Irigoyen, Sonia; Doust, Andrew N.
  • Frontiers in Plant Science, Vol. 7
  • DOI: 10.3389/fpls.2016.01885

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)
journal, June 2013

  • Jia, Guanqing; Huang, Xuehui; Zhi, Hui
  • Nature Genetics, Vol. 45, Issue 8
  • DOI: 10.1038/ng.2673

Morphogenic Regulators Baby boom and Wuschel Improve Monocot Transformation
journal, September 2016


Foxtail Millet: A Sequence-Driven Grass Model System: Figure 1.
journal, January 2009

  • Doust, Andrew N.; Kellogg, Elizabeth A.; Devos, Katrien M.
  • Plant Physiology, Vol. 149, Issue 1
  • DOI: 10.1104/pp.108.129627

Spike-dip transformation of Setaria viridis
journal, March 2016

  • Saha, Prasenjit; Blumwald, Eduardo
  • The Plant Journal, Vol. 86, Issue 1
  • DOI: 10.1111/tpj.13148

Population genetics of Setaria viridis , a new model system
journal, September 2014

  • Huang, Pu; Feldman, Maximilian; Schroder, Stephan
  • Molecular Ecology, Vol. 23, Issue 20
  • DOI: 10.1111/mec.12907

Enhancing crop yield by optimizing plant developmental features
journal, September 2016

  • Mathan, Jyotirmaya; Bhattacharya, Juhi; Ranjan, Aashish
  • Development, Vol. 143, Issue 18
  • DOI: 10.1242/dev.134072

CRISPR/Cas9: An RNA-guided highly precise synthetic tool for plant genome editing
journal, June 2017

  • Demirci, Yeliz; Zhang, Baohong; Unver, Turgay
  • Journal of Cellular Physiology, Vol. 233, Issue 3
  • DOI: 10.1002/jcp.25970

Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago
journal, April 2009

  • Lu, H.; Zhang, J.; Liu, K. -b.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 18
  • DOI: 10.1073/pnas.0900158106

A Multipurpose Toolkit to Enable Advanced Genome Engineering in Plants
journal, May 2017

  • Čermák, Tomáš; Curtin, Shaun J.; Gil-Humanes, Javier
  • The Plant Cell, Vol. 29, Issue 6
  • DOI: 10.1105/tpc.16.00922

A synthesis of transcriptomic surveys to dissect the genetic basis of C4 photosynthesis
journal, June 2016


Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses
journal, March 2011

  • Li, P.; Brutnell, T. P.
  • Journal of Experimental Botany, Vol. 62, Issue 9
  • DOI: 10.1093/jxb/err096

Setaria viridis : A Model for C 4 Photosynthesis
journal, August 2010

  • Brutnell, Thomas P.; Wang, Lin; Swartwood, Kerry
  • The Plant Cell, Vol. 22, Issue 8
  • DOI: 10.1105/tpc.110.075309

Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses
journal, June 2012