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Title: Know your enemy, embrace your friend: using omics to understand how plants respond differently to pathogenic and mutualistic microorganisms

ORCiD logo [1];  [2]
  1. Hawkesbury Institute for the Environment Western Sydney University Richmond NSW 2753 Australia
  2. Institut National de la Recherche Agronomique (INRA) Unité Mixte de Recherche 1136 INRA‐Université de Lorraine Interactions Arbres/Microorganismes Laboratoire d'excellence ARBRE Centre INRA‐Grand Est‐Nancy 54280 Champenoux France
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Publisher's Accepted Manuscript
Journal Name:
The Plant Journal
Additional Journal Information:
Journal Name: The Plant Journal Journal Volume: 93 Journal Issue: 4; Journal ID: ISSN 0960-7412
Country of Publication:
United Kingdom

Citation Formats

Plett, Jonathan M., and Martin, Francis M. Know your enemy, embrace your friend: using omics to understand how plants respond differently to pathogenic and mutualistic microorganisms. United Kingdom: N. p., 2018. Web.
Plett, Jonathan M., & Martin, Francis M. Know your enemy, embrace your friend: using omics to understand how plants respond differently to pathogenic and mutualistic microorganisms. United Kingdom.
Plett, Jonathan M., and Martin, Francis M. Thu . "Know your enemy, embrace your friend: using omics to understand how plants respond differently to pathogenic and mutualistic microorganisms". United Kingdom.
title = {Know your enemy, embrace your friend: using omics to understand how plants respond differently to pathogenic and mutualistic microorganisms},
author = {Plett, Jonathan M. and Martin, Francis M.},
abstractNote = {},
doi = {10.1111/tpj.13802},
journal = {The Plant Journal},
number = 4,
volume = 93,
place = {United Kingdom},
year = {2018},
month = {1}

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Works referenced in this record:

Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases
journal, October 2003

  • Radutoiu, Simona; Madsen, Lene Heegaard; Madsen, Esben Bjørn
  • Nature, Vol. 425, Issue 6958
  • DOI: 10.1038/nature02039

TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton
journal, May 2017

  • Cox, Kevin L.; Meng, Fanhong; Wilkins, Katherine E.
  • Nature Communications, Vol. 8, Issue 1
  • DOI: 10.1038/ncomms15588

Ethylene Signaling Is Important for Isoflavonoid-Mediated Resistance to Rhizoctonia solani in Roots of Medicago truncatula
journal, September 2017

  • Liu, Yao; Hassan, Samira; Kidd, Brendan N.
  • Molecular Plant-Microbe Interactions, Vol. 30, Issue 9
  • DOI: 10.1094/MPMI-03-17-0057-R

Metabolic priming by a secreted fungal effector
journal, October 2011

  • Djamei, Armin; Schipper, Kerstin; Rabe, Franziska
  • Nature, Vol. 478, Issue 7369
  • DOI: 10.1038/nature10454

Arabidopsis EDS1 Connects Pathogen Effector Recognition to Cell Compartment-Specific Immune Responses
journal, December 2011

Arbuscular mycorrhizal symbiosis enhanced growth and antioxidant metabolism in date palm subjected to long-term drought
journal, July 2015

Molecular basis of lipo-chitooligosaccharide recognition by the lysin motif receptor-like kinase LYR3 in legumes
journal, May 2016

  • Malkov, Nikita; Fliegmann, Judith; Rosenberg, Charles
  • Biochemical Journal, Vol. 473, Issue 10
  • DOI: 10.1042/BCJ20160073

Strigolactone-Induced Putative Secreted Protein 1 Is Required for the Establishment of Symbiosis by the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis
journal, April 2016

  • Tsuzuki, Syusaku; Handa, Yoshihiro; Takeda, Naoya
  • Molecular Plant-Microbe Interactions, Vol. 29, Issue 4
  • DOI: 10.1094/MPMI-10-15-0234-R

Gene silencing by microRNAs: contributions of translational repression and mRNA decay
journal, January 2011

  • Huntzinger, Eric; Izaurralde, Elisa
  • Nature Reviews Genetics, Vol. 12, Issue 2
  • DOI: 10.1038/nrg2936

A Downy Mildew Effector Attenuates Salicylic Acid–Triggered Immunity in Arabidopsis by Interacting with the Host Mediator Complex
journal, December 2013

Type IV Effector Proteins Involved in the Medicago - Sinorhizobium Symbiosis
journal, January 2017

  • Nelson, Matthew S.; Chun, Chan Lan; Sadowsky, Michael J.
  • Molecular Plant-Microbe Interactions, Vol. 30, Issue 1
  • DOI: 10.1094/MPMI-10-16-0211-R

Structural insight into the activation of plant receptor kinases
journal, August 2014

SWEETs, transporters for intracellular and intercellular sugar translocation
journal, June 2015

Identification of glutathione S-transferase genes responding to pathogen infestation in Populus tomentosa
journal, May 2014

Volatile signalling by sesquiterpenes from ectomycorrhizal fungi reprogrammes root architecture
journal, February 2015

  • Ditengou, Franck A.; Müller, Anna; Rosenkranz, Maaria
  • Nature Communications, Vol. 6, Issue 1
  • DOI: 10.1038/ncomms7279

Reciprocal Rewards Stabilize Cooperation in the Mycorrhizal Symbiosis
journal, August 2011

Wheat PR-1 proteins are targeted by necrotrophic pathogen effector proteins
journal, August 2016

  • Breen, Susan; Williams, Simon J.; Winterberg, Britta
  • The Plant Journal, Vol. 88, Issue 1
  • DOI: 10.1111/tpj.13228

A receptor kinase gene of the LysM type is involved in legumeperception of rhizobial signals
journal, October 2003

  • Madsen, Esben Bjørn; Madsen, Lene Heegaard; Radutoiu, Simona
  • Nature, Vol. 425, Issue 6958
  • DOI: 10.1038/nature02045

Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust Melampsora larici-populina
journal, March 2007

  • Rinaldi, Cécile; Kohler, Annegret; Frey, Pascal
  • Plant Physiology, Vol. 144, Issue 1
  • DOI: 10.1104/pp.106.094987

A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development
journal, July 2011

An Ethylene Biosynthesis-Inducing Endoxylanase Elicits Electrolyte Leakage and Necrosis in Nicotiana tabacum cv Xanthi Leaves
journal, December 1990

  • Bailey, Bryan A.; Dean, Jeffrey F. D.; Anderson, James D.
  • Plant Physiology, Vol. 94, Issue 4
  • DOI: 10.1104/pp.94.4.1849

Arabidopsis proteins important for modulating defense responses to Pseudomonas syringae that secrete HopW1-1
journal, May 2008

Impact of plant domestication on rhizosphere microbiome assembly and functions
journal, June 2015

  • Pérez-Jaramillo, Juan E.; Mendes, Rodrigo; Raaijmakers, Jos M.
  • Plant Molecular Biology, Vol. 90, Issue 6
  • DOI: 10.1007/s11103-015-0337-7

Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus
journal, June 2008

EIN2-mediated signaling is involved in pre-invasion defense in Nicotiana benthamiana against potato late blight pathogen, Phytophthora infestans
journal, April 2017

MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
journal, June 2015

The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species
journal, July 2008

The small RNA diversity from Medicago truncatularoots under biotic interactions evidences the environmental plasticity of the miRNAome
journal, September 2014

  • Formey, Damien; Sallet, Erika; Lelandais-Brière, Christine
  • Genome Biology, Vol. 15, Issue 9
  • DOI: 10.1186/s13059-014-0457-4

A J Domain Virulence Effector of Pseudomonas syringae Remodels Host Chloroplasts and Suppresses Defenses
journal, March 2007

An Effector-Targeted Protease Contributes to Defense against Phytophthora infestans and Is under Diversifying Selection in Natural Hosts
journal, October 2010

  • Kaschani, Farnusch; Shabab, Mohammed; Bozkurt, Tolga
  • Plant Physiology, Vol. 154, Issue 4
  • DOI: 10.1104/pp.110.158030

Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots
journal, January 2014

  • Plett, Jonathan M.; Khachane, Amit; Ouassou, Malika
  • New Phytologist, Vol. 202, Issue 1
  • DOI: 10.1111/nph.12655

Regulation of sugar transporter activity for antibacterial defense in Arabidopsis
journal, November 2016

Medicago truncatula symbiosis mutants affected in the interaction with a biotrophic root pathogen
journal, December 2014

  • Rey, Thomas; Chatterjee, Abhishek; Buttay, Margaux
  • New Phytologist, Vol. 206, Issue 2
  • DOI: 10.1111/nph.13233

The potential for give and take in plant–microbiome relationships
journal, June 2014

Host and non-host roots in rice: cellular and molecular approaches reveal differential responses to arbuscular mycorrhizal fungi
journal, August 2015

  • Fiorilli, Valentina; Vallino, Marta; Biselli, Chiara
  • Frontiers in Plant Science, Vol. 6
  • DOI: 10.3389/fpls.2015.00636

Plant hormones in arbuscular mycorrhizal symbioses: an emerging role for gibberellins
journal, March 2013

  • Foo, Eloise; Ross, John J.; Jones, William T.
  • Annals of Botany, Vol. 111, Issue 5
  • DOI: 10.1093/aob/mct041

The Arabidopsis vacuolar sugar transporter SWEET2 limits carbon sequestration from roots and restricts Pythium infection
journal, September 2015

  • Chen, Hsin-Yi; Huh, Jung-Hyun; Yu, Ya-Chi
  • The Plant Journal, Vol. 83, Issue 6
  • DOI: 10.1111/tpj.12948

Blurred boundaries: lifestyle lessons from ectomycorrhizal fungal genomes
journal, January 2011

Rhizobium–legume symbiosis in the absence of Nod factors: two possible scenarios with or without the T3SS
journal, July 2015

  • Okazaki, Shin; Tittabutr, Panlada; Teulet, Albin
  • The ISME Journal, Vol. 10, Issue 1
  • DOI: 10.1038/ismej.2015.103

Sugar transporters for intercellular exchange and nutrition of pathogens
journal, November 2010

  • Chen, Li-Qing; Hou, Bi-Huei; Lalonde, Sylvie
  • Nature, Vol. 468, Issue 7323
  • DOI: 10.1038/nature09606

Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os- 11N3
journal, November 2010

Truffles Regulate Plant Root Morphogenesis via the Production of Auxin and Ethylene
journal, June 2009

  • Splivallo, Richard; Fischer, Urs; Göbel, Cornelia
  • Plant Physiology, Vol. 150, Issue 4
  • DOI: 10.1104/pp.109.141325

Pseudomonas syringae Effector AvrPto Blocks Innate Immunity by Targeting Receptor Kinases
journal, January 2008

Hijacking of leguminous nodulation signaling by the rhizobial type III secretion system
journal, September 2013

  • Okazaki, S.; Kaneko, T.; Sato, S.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 42
  • DOI: 10.1073/pnas.1302360110

SWEET17, a Facilitative Transporter, Mediates Fructose Transport across the Tonoplast of Arabidopsis Roots and Leaves
journal, December 2013

  • Guo, Woei-Jiun; Nagy, Reka; Chen, Hsin-Yi
  • Plant Physiology, Vol. 164, Issue 2
  • DOI: 10.1104/pp.113.232751

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum
journal, August 2016

  • Baroncelli, Riccardo; Amby, Daniel Buchvaldt; Zapparata, Antonio
  • BMC Genomics, Vol. 17, Issue 1
  • DOI: 10.1186/s12864-016-2917-6

Identification of MicroRNAs Involved in Pathogen-Associated Molecular Pattern-Triggered Plant Innate Immunity
journal, February 2010

  • Li, Yan; Zhang, QingQing; Zhang, Jiangguang
  • Plant Physiology, Vol. 152, Issue 4
  • DOI: 10.1104/pp.109.151803

Nutrient computation for root architecture
journal, October 2014

Global gene expression of Poncirus trifoliata, Citrus sunki and their hybrids under infection of Phytophthora parasitica
journal, January 2011

  • Boava, Leonardo P.; Cristofani-Yaly, Mariângela; Mafra, Valéria S.
  • BMC Genomics, Vol. 12, Issue 1
  • DOI: 10.1186/1471-2164-12-39

The structure and function of a soybean  -glucan-elicitor-binding protein
journal, February 1997

  • Umemoto, N.; Kakitani, M.; Iwamatsu, A.
  • Proceedings of the National Academy of Sciences, Vol. 94, Issue 3
  • DOI: 10.1073/pnas.94.3.1029

A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy
journal, July 2011

Chestnut resistance to the blight disease: insights from transcriptome analysis
journal, January 2012

  • Barakat, Abdelali; Staton, Meg; Cheng, Chun-Huai
  • BMC Plant Biology, Vol. 12, Issue 1
  • DOI: 10.1186/1471-2229-12-38

Seven Lotus japonicus Genes Required for Transcriptional Reprogramming of the Root during Fungal and Bacterial Symbiosis
journal, June 2005

  • Kistner, Catherine; Winzer, Thilo; Pitzschke, Andrea
  • The Plant Cell, Vol. 17, Issue 8
  • DOI: 10.1105/tpc.105.032714

Pseudomonas syringae type III effector HopAF1 suppresses plant immunity by targeting methionine recycling to block ethylene induction
journal, June 2016

  • Washington, Erica J.; Mukhtar, M. Shahid; Finkel, Omri M.
  • Proceedings of the National Academy of Sciences, Vol. 113, Issue 25
  • DOI: 10.1073/pnas.1606322113

Massive sequencing of Ulmus minor’s transcriptome provides new molecular tools for a genus under the constant threat of Dutch elm disease
journal, July 2015

  • Perdiguero, Pedro; Venturas, Martin; Cervera, María Teresa
  • Frontiers in Plant Science, Vol. 6
  • DOI: 10.3389/fpls.2015.00541

Regulation of resource exchange in the arbuscular mycorrhizal symbiosis
journal, November 2015

RXLR Effector AVR2 Up-Regulates a Brassinosteroid-Responsive bHLH Transcription Factor to Suppress Immunity
journal, March 2017

  • Turnbull, Dionne; Yang, Lina; Naqvi, Shaista
  • Plant Physiology, Vol. 174, Issue 1
  • DOI: 10.1104/pp.16.01804

Plant Pattern-Recognition Receptor FLS2 Is Directed for Degradation by the Bacterial Ubiquitin Ligase AvrPtoB
journal, December 2008

Biotic and Abiotic Stimulation of Root Epidermal Cells Reveals Common and Specific Responses to Arbuscular Mycorrhizal Fungi
journal, January 2009

  • Genre, Andrea; Ortu, Giuseppe; Bertoldo, Chiara
  • Plant Physiology, Vol. 149, Issue 3
  • DOI: 10.1104/pp.108.132225

A Medicago truncatula phosphate transporter indispensable for the arbuscular mycorrhizal symbiosis
journal, January 2007

  • Javot, H.; Penmetsa, R. V.; Terzaghi, N.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 5
  • DOI: 10.1073/pnas.0608136104

Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization
journal, May 2005

  • Guimil, S.; Chang, H. -S.; Zhu, T.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 22
  • DOI: 10.1073/pnas.0502999102

Plant immunity triggered by engineered in vivo release of oligogalacturonides, damage-associated molecular patterns
journal, April 2015

  • Benedetti, Manuel; Pontiggia, Daniela; Raggi, Sara
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 17
  • DOI: 10.1073/pnas.1504154112

The rice LysM receptor-like kinase Os CERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling
journal, March 2017

  • Carotenuto, Gennaro; Chabaud, Mireille; Miyata, Kana
  • New Phytologist, Vol. 214, Issue 4
  • DOI: 10.1111/nph.14539

Identification of Bradyrhizobium elkanii Genes Involved in Incompatibility with Soybean Plants Carrying the Rj4 Allele
journal, July 2015

  • Faruque, Omar M.; Miwa, Hiroki; Yasuda, Michiko
  • Applied and Environmental Microbiology, Vol. 81, Issue 19
  • DOI: 10.1128/AEM.01942-15

Use of a Subtractive Hybridization Approach to Identify New Medicago truncatula Genes Induced During Root Nodule Development
journal, January 1996

Pathogen Effectors Target Arabidopsis EDS1 and Alter Its Interactions with Immune Regulators
journal, December 2011

Conserved C-Terminal Motifs Required for Avirulence and Suppression of Cell Death by Phytophthora sojae effector Avr1b
journal, April 2008

A unique virulence factor for proliferation and dwarfism in plants identified from a phytopathogenic bacterium
journal, March 2009

  • Hoshi, A.; Oshima, K.; Kakizawa, S.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 15
  • DOI: 10.1073/pnas.0813038106

Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae
journal, December 2013

Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis
journal, August 2017

  • MacLean, Allyson M.; Bravo, Armando; Harrison, Maria J.
  • The Plant Cell, Vol. 29, Issue 10
  • DOI: 10.1105/tpc.17.00555

Arbuscular mycorrhiza Symbiosis Induces a Major Transcriptional Reprogramming of the Potato SWEET Sugar Transporter Family
journal, April 2016

Pseudomonas syringae effector AvrPtoB suppresses basal defence in Arabidopsis
journal, August 2006

Algal ancestor of land plants was preadapted for symbiosis
journal, October 2015

  • Delaux, Pierre-Marc; Radhakrishnan, Guru V.; Jayaraman, Dhileepkumar
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 43
  • DOI: 10.1073/pnas.1515426112

Functional Analysis of NopM, a Novel E3 Ubiquitin Ligase (NEL) Domain Effector of Rhizobium sp. Strain NGR234
journal, May 2012

Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza
journal, January 2011

  • Maillet, Fabienne; Poinsot, Véréna; André, Olivier
  • Nature, Vol. 469, Issue 7328
  • DOI: 10.1038/nature09622

Accumulation of reactive oxygen species in arbuscular mycorrhizal roots
journal, May 2005

Role of plant–fungal nutrient trading and host control in determining the competitive success of ectomycorrhizal fungi
journal, July 2017

  • Hortal, Sara; Plett, Krista Lynn; Plett, Jonathan Michael
  • The ISME Journal, Vol. 11, Issue 12
  • DOI: 10.1038/ismej.2017.116

Maize susceptibility to Ustilago maydis is influenced by genetic and chemical perturbation of carbohydrate allocation : The transcriptome of tumours induced by
journal, November 2016

  • Kretschmer, Matthias; Croll, Daniel; Kronstad, James W.
  • Molecular Plant Pathology, Vol. 18, Issue 9
  • DOI: 10.1111/mpp.12486

Lipopolysaccharide from Xanthomonas campestris Induces Defense-Related Gene Expression in Brassica campestris
journal, January 1995

  • Newman, Mari- Anne
  • Molecular Plant-Microbe Interactions, Vol. 8, Issue 5
  • DOI: 10.1094/MPMI-8-0778

The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses
journal, March 2015

  • Plett, Jonathan M.; Tisserant, Emilie; Brun, Annick
  • Molecular Plant-Microbe Interactions, Vol. 28, Issue 3
  • DOI: 10.1094/MPMI-05-14-0129-FI

Filamentous pathogen effector functions: of pathogens, hosts and microbiomes
journal, August 2014

  • Rovenich, Hanna; Boshoven, Jordi C.; Thomma, Bart PHJ
  • Current Opinion in Plant Biology, Vol. 20
  • DOI: 10.1016/j.pbi.2014.05.001

ETHYLENE RESPONSE FACTOR1 Integrates Signals from Ethylene and Jasmonate Pathways in Plant Defense
journal, December 2002

  • Lorenzo, Oscar; Piqueras, Raquel; Sánchez-Serrano, Jose J.
  • The Plant Cell, Vol. 15, Issue 1
  • DOI: 10.1105/tpc.007468

Suppression of Arbuscule Degeneration in Medicago truncatula phosphate transporter4 Mutants Is Dependent on the Ammonium Transporter 2 Family Protein AMT2;3
journal, April 2015

  • Breuillin-Sessoms, Florence; Floss, Daniela S.; Gomez, S. Karen
  • The Plant Cell, Vol. 27, Issue 4
  • DOI: 10.1105/tpc.114.131144

New Phytologist ? an evolving host for mycorrhizal research
journal, April 2007

Transcriptome Analysis of Early Responsive Genes in Rice during Magnaporthe oryzae Infection
journal, December 2014

micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
journal, May 2015

  • Holt, Dennis B.; Gupta, Vikas; Meyer, Dörte
  • New Phytologist, Vol. 208, Issue 1
  • DOI: 10.1111/nph.13445

Positive Gene Regulation by a Natural Protective miRNA Enables Arbuscular Mycorrhizal Symbiosis
journal, January 2017

  • Couzigou, Jean-Malo; Lauressergues, Dominique; André, Olivier
  • Cell Host & Microbe, Vol. 21, Issue 1
  • DOI: 10.1016/j.chom.2016.12.001

The Origin and Early Evolution of Roots
journal, September 2014

Genetic and Cytogenetic Mapping of DMI1, DMI2 , and DMI3 Genes of Medicago truncatula Involved in Nod Factor Transduction, Nodulation, and Mycorrhization
journal, November 2002

  • Ané, Jean-Michel; Lévy, Julien; Thoquet, Philippe
  • Molecular Plant-Microbe Interactions, Vol. 15, Issue 11
  • DOI: 10.1094/MPMI.2002.15.11.1108

Mycorrhizal ecology and evolution: the past, the present, and the future
journal, February 2015

  • van der Heijden, Marcel G. A.; Martin, Francis M.; Selosse, Marc-André
  • New Phytologist, Vol. 205, Issue 4
  • DOI: 10.1111/nph.13288

Fungal Effectors and Plant Susceptibility
journal, April 2015

NFP, a LysM protein controlling Nod factor perception, also intervenes in Medicago truncatula resistance to pathogens
journal, February 2013

  • Rey, Thomas; Nars, Amaury; Bonhomme, Maxime
  • New Phytologist, Vol. 198, Issue 3
  • DOI: 10.1111/nph.12198

Integrated miRNA and mRNA expression profiling reveals the response regulators of a susceptible tomato cultivar to early blight disease
journal, March 2017

  • Sarkar, Deepti; Maji, Ranjan Kumar; Dey, Sayani
  • DNA Research, Vol. 24, Issue 3
  • DOI: 10.1093/dnares/dsx003

Using Ancient Traits to Convert Soil Health into Crop Yield: Impact of Selection on Maize Root and Rhizosphere Function
journal, March 2016

  • Schmidt, Jennifer E.; Bowles, Timothy M.; Gaudin, Amélie C. M.
  • Frontiers in Plant Science, Vol. 7
  • DOI: 10.3389/fpls.2016.00373

Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor
journal, July 2006

  • Kaku, H.; Nishizawa, Y.; Ishii-Minami, N.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 29
  • DOI: 10.1073/pnas.0508882103

Transcriptome Analysis of Poplar during Leaf Spot Infection with Sphaerulina spp.
journal, September 2015

Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
journal, September 2016

  • Hacquard, Stéphane; Kracher, Barbara; Hiruma, Kei
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms13072

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
journal, March 2010

  • Martin, Francis; Kohler, Annegret; Murat, Claude
  • Nature, Vol. 464, Issue 7291
  • DOI: 10.1038/nature08867

Mechanisms of resistance/tolerance of Pyrus communis to Stemphylium vesicarium. A transcriptome analysis
journal, July 2015

  • Pereira, Vanessa Tolentino; Sousa, Lisete; de Sousa, António Teixeira
  • Agroforestry Systems, Vol. 89, Issue 6
  • DOI: 10.1007/s10457-015-9831-9

Botrytis small RNA Bc -siR37 suppresses plant defense genes by cross-kingdom RNAi
journal, March 2017

CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis
journal, November 2007

  • Miya, A.; Albert, P.; Shinya, T.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 49
  • DOI: 10.1073/pnas.0705147104

Pseudomonas syringae type III effector AvrRpt2 alters Arabidopsis thaliana auxin physiology
journal, December 2007

  • Chen, Z.; Agnew, J. L.; Cohen, J. D.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 50
  • DOI: 10.1073/pnas.0704901104

Roles of small RNAs in soybean defense against Phytophthora sojae infection
journal, July 2014

  • Wong, James; Gao, Lei; Yang, Yang
  • The Plant Journal, Vol. 79, Issue 6
  • DOI: 10.1111/tpj.12590

Intracellular accommodation of microbes by plants: a common developmental program for symbiosis and disease?
journal, August 2000

Verticillium Ave1 effector induces tomato defense gene expression independent of Ve1 protein
journal, November 2016

The Xanthomonas Type III Effector Protein AvrBs3 Modulates Plant Gene Expression and Induces Cell Hypertrophy in the Susceptible Host
journal, July 2002

  • Marois, Eric; Van den Ackerveken, Guido; Bonas, Ulla
  • Molecular Plant-Microbe Interactions, Vol. 15, Issue 7
  • DOI: 10.1094/MPMI.2002.15.7.637

Phytoplasma protein effector SAP11 enhances insect vector reproduction by manipulating plant development and defense hormone biosynthesis
journal, November 2011

  • Sugio, A.; Kingdom, H. N.; MacLean, A. M.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 48
  • DOI: 10.1073/pnas.1105664108

Signaling cross-talk in plant disease resistance
journal, June 2013

The Pseudomonas syringae Type III Effector HopAM1 Enhances Virulence on Water-Stressed Plants
journal, March 2008

  • Goel, Ajay K.; Lundberg, Derek; Torres, Miguel A.
  • Molecular Plant-Microbe Interactions, Vol. 21, Issue 3
  • DOI: 10.1094/MPMI-21-3-0361

Harnessing the rhizosphere microbiome through plant breeding and agricultural management
journal, August 2012

Unconventionally secreted effectors of two filamentous pathogens target plant salicylate biosynthesis
journal, August 2014

  • Liu, Tingli; Song, Tianqiao; Zhang, Xiong
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms5686

Pseudomonas syringae Effector Protein AvrB Perturbs Arabidopsis Hormone Signaling by Activating MAP Kinase 4
journal, February 2010

The Pseudomonas syringae effector protein HopZ1a suppresses effector-triggered immunity
journal, July 2010

Cladosporium fulvum Avr4 Protects Fungal Cell Walls Against Hydrolysis by Plant Chitinases Accumulating During Infection
journal, December 2006

  • van den Burg, Harrold A.; Harrison, Stuart J.; Joosten, Matthieu H. A. J.
  • Molecular Plant-Microbe Interactions, Vol. 19, Issue 12
  • DOI: 10.1094/MPMI-19-1420

Host-selective toxins, Ptr ToxA and Ptr ToxB, as necrotrophic effectors in the Pyrenophora tritici-repentis-wheat interaction: Research review
journal, July 2010

Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes
journal, May 2014

  • Plett, J. M.; Daguerre, Y.; Wittulsky, S.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 22
  • DOI: 10.1073/pnas.1322671111

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
journal, November 2013

  • Tisserant, E.; Malbreil, M.; Kuo, A.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 50
  • DOI: 10.1073/pnas.1313452110

Bacterial RNA and small antiviral compounds activate caspase-1 through cryopyrin/Nalp3
journal, January 2006

  • Kanneganti, Thirumala-Devi; Özören, Nesrin; Body-Malapel, Mathilde
  • Nature, Vol. 440, Issue 7081
  • DOI: 10.1038/nature04517

Soybean miR172c Targets the Repressive AP2 Transcription Factor NNC1 to Activate ENOD40 Expression and Regulate Nodule Initiation
journal, December 2014

The Downy Mildew Effector Proteins ATR1 and ATR13 Promote Disease Susceptibility in Arabidopsis thaliana
journal, December 2007

The Bacterial Effector HopX1 Targets JAZ Transcriptional Repressors to Activate Jasmonate Signaling and Promote Infection in Arabidopsis
journal, February 2014

LYR3, a high-affinity LCO-binding protein of Medicago truncatula , interacts with LYK3, a key symbiotic receptor
journal, May 2016

  • Fliegmann, Judith; Jauneau, Alain; Pichereaux, Carole
  • FEBS Letters, Vol. 590, Issue 10
  • DOI: 10.1002/1873-3468.12191

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
journal, February 2015

  • Kohler, Annegret; Kuo, Alan; Nagy, Laszlo G.
  • Nature Genetics, Vol. 47, Issue 4
  • DOI: 10.1038/ng.3223

Fungal carbohydrate support in the ectomycorrhizal symbiosis: a review: Fungal carbohydrates in the ectomycorrhizal symbiosis
journal, February 2010

Effectiveness of arbuscular mycorrhizal fungi in the protection of olive plants against oxidative stress induced by drought
journal, June 2014

  • Fouad, Mohamed O.; Essahibi, Abdellatif; Benhiba, Laila
  • Spanish Journal of Agricultural Research, Vol. 12, Issue 3
  • DOI: 10.5424/sjar/2014123-4815

Streptomyces -Induced Resistance Against Oak Powdery Mildew Involves Host Plant Responses in Defense, Photosynthesis, and Secondary Metabolism Pathways
journal, September 2014

  • Kurth, Florence; Mailänder, Sarah; Bönn, Markus
  • Molecular Plant-Microbe Interactions, Vol. 27, Issue 9
  • DOI: 10.1094/MPMI-10-13-0296-R

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria
journal, May 2017

A secreted Ustilago maydis effector promotes virulence by targeting anthocyanin biosynthesis in maize
journal, January 2014

Homologous RXLR effectors from Hyaloperonospora arabidopsidis and Phytophthora sojae suppress immunity in distantly related plants
journal, October 2012

Both the Extracellular Leucine-Rich Repeat Domain and the Kinase Activity of FLS2 Are Required for Flagellin Binding and Signaling in Arabidopsis
journal, May 2001

  • Gómez-Gómez, Lourdes; Bauer, Zsuzsa; Boller, Thomas
  • The Plant Cell, Vol. 13, Issue 5
  • DOI: 10.1105/tpc.13.5.1155

Lectin Receptor Kinases Participate in Protein-Protein Interactions to Mediate Plasma Membrane-Cell Wall Adhesions in Arabidopsis
journal, December 2005

  • Gouget, Anne; Senchou, Virginie; Govers, Francine
  • Plant Physiology, Vol. 140, Issue 1
  • DOI: 10.1104/pp.105.066464

Fungal Effector Protein AVR2 Targets Diversifying Defense-Related Cys Proteases of Tomato
journal, April 2008

  • Shabab, Mohammed; Shindo, Takayuki; Gu, Christian
  • The Plant Cell, Vol. 20, Issue 4
  • DOI: 10.1105/tpc.107.056325

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways
journal, October 2013

Os8N3 is a host disease-susceptibility gene for bacterial blight of rice
journal, June 2006

  • Yang, B.; Sugio, A.; White, F. F.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 27
  • DOI: 10.1073/pnas.0604088103

Sesquiterpene emissions from Alternaria alternata and Fusarium oxysporum: Effects of age, nutrient availability and co-cultivation
journal, February 2016

  • Weikl, Fabian; Ghirardo, Andrea; Schnitzler, Jörg-Peter
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep22152

NopL, an Effector Protein of Rhizobium sp. NGR234, Thwarts Activation of Plant Defense Reactions
journal, February 2004

  • Bartsev, Alexander V.; Deakin, William J.; Boukli, Nawal M.
  • Plant Physiology, Vol. 134, Issue 2
  • DOI: 10.1104/pp.103.031740

Transcriptional Responses of Paxillus involutus and Betula pendula During Formation of Ectomycorrhizal Root Tissue
journal, February 2004

  • Johansson, Tomas; Le Quéré, Antoine; Ahren, Dag
  • Molecular Plant-Microbe Interactions, Vol. 17, Issue 2
  • DOI: 10.1094/MPMI.2004.17.2.202

A Thaumatin-Like Protein, Rj4, Controls Nodule Symbiotic Specificity in Soybean
journal, July 2014

  • Hayashi, Masaki; Shiro, Sokichi; Kanamori, Hiroyuki
  • Plant and Cell Physiology, Vol. 55, Issue 9
  • DOI: 10.1093/pcp/pcu099

Global Patterns of Gene Regulation Associated with the Development of Ectomycorrhiza Between Birch ( Betula pendula Roth.) and Paxillus involutus (Batsch) Fr.
journal, July 2005

  • Le Quéré, Antoine; Wright, Derek P.; Söderström, Bengt
  • Molecular Plant-Microbe Interactions, Vol. 18, Issue 7
  • DOI: 10.1094/MPMI-18-0659

Two Cytoplasmic Effectors of Phytophthora sojae Regulate Plant Cell Death via Interactions with Plant Catalases
journal, November 2014

Bacterial Effector Activates Jasmonate Signaling by Directly Targeting JAZ Transcriptional Repressors
journal, October 2013

Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus
journal, November 2004

Plant Stomata Function in Innate Immunity against Bacterial Invasion
journal, September 2006

Role of gibberellins during arbuscular mycorrhizal formation in tomato: new insights revealed by endogenous quantification and genetic analysis of their metabolism in mycorrhizal roots
journal, October 2014

  • Martín-Rodríguez, José Ángel; Ocampo, Juan Antonio; Molinero-Rosales, Nuria
  • Physiologia Plantarum, Vol. 154, Issue 1
  • DOI: 10.1111/ppl.12274

Pep1, a Secreted Effector Protein of Ustilago maydis, Is Required for Successful Invasion of Plant Cells
journal, February 2009

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
journal, September 2016

  • Spatafora, Joseph W.; Chang, Ying; Benny, Gerald L.
  • Mycologia, Vol. 108, Issue 5
  • DOI: 10.3852/16-042

Oak Root Response to Ectomycorrhizal Symbiosis Establishment: RNA-Seq Derived Transcript Identification and Expression Profiling
journal, May 2014

A family of conserved bacterial effectors inhibits salicylic acid-mediated basal immunity and promotes disease necrosis in plants
journal, June 2004

  • DebRoy, S.; Thilmony, R.; Kwack, Y. -B.
  • Proceedings of the National Academy of Sciences, Vol. 101, Issue 26
  • DOI: 10.1073/pnas.0401601101

DELLA proteins regulate arbuscule formation in arbuscular mycorrhizal symbiosis
journal, December 2013

  • Floss, D. S.; Levy, J. G.; Levesque-Tremblay, V.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 51
  • DOI: 10.1073/pnas.1308973110

The type 3 effector NopL of Sinorhizobium sp. strain NGR234 is a mitogen-activated protein kinase substrate
journal, February 2016

  • Ge, Ying-Ying; Xiang, Qi-Wang; Wagner, Christian
  • Journal of Experimental Botany, Vol. 67, Issue 8
  • DOI: 10.1093/jxb/erw065

Receptor-mediated chitin perception in legume roots is functionally separable from Nod factor perception
journal, September 2017

  • Bozsoki, Zoltan; Cheng, Jeryl; Feng, Feng
  • Proceedings of the National Academy of Sciences, Vol. 114, Issue 38
  • DOI: 10.1073/pnas.1706795114

LysM Domain Receptor Kinases Regulating Rhizobial Nod Factor-Induced Infection
journal, October 2003

Unearthing the roots of ectomycorrhizal symbioses
journal, October 2016

  • Martin, Francis; Kohler, Annegret; Murat, Claude
  • Nature Reviews Microbiology, Vol. 14, Issue 12
  • DOI: 10.1038/nrmicro.2016.149