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Title: Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile

Dethiobacter alkaliphilus strain AHT1 T is an anaerobic, sulfidogenic, moderately salt-tolerant alkaliphilic chemolithotroph isolated from hypersaline soda lake sediments in northeastern Mongolia. It is thus a Gram-positive bacterium with low GC content, within the phylum Firmicutes. We report its draft genome sequence, which consists of 34 contigs with a total sequence length of 3.12 Mbp. D. alkaliphilus strain AHT1 T was sequenced by the Joint Genome Institute (JGI) as part of the Community Science Program due to its relevance to bioremediation and biotechnological applications.
Authors:
 [1] ;  [2] ;  [1] ;  [3] ;  [4] ;  [5] ;  [5] ;  [6] ;  [5] ;  [1]
  1. Univ. of Amsterdam (Netherlands). Dept. of Freshwater and Marine Ecology, Microbial System Ecology, Inst. for Biodiversity and Ecosystem Dynamics
  2. Research Centre of Biotechnology, Delft (Netherlands). Winogradsky Inst. of Microbiology; Delft Univ. of Technology (Netherlands). Dept. of Biotechnology
  3. St. Petersburg State Univ. (Russia). Center for Algorithmic Biotechnology, Inst. of Translational Biomedicine
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  6. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center; King Abdulaziz Univ., Jeddah (Saudi Arabia). Dept. of Biological Sciences
Publication Date:
Grant/Contract Number:
AC02-05CH11231
Type:
Accepted Manuscript
Journal Name:
Standards in Genomic Sciences
Additional Journal Information:
Journal Volume: 12; Journal Issue: 1; Journal ID: ISSN 1944-3277
Publisher:
BioMed Central
Research Org:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org:
USDOE Office of Science (SC)
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; extreme environment; soda lake; sediment; haloalkaliphilic; gram-positive; firmicutes
OSTI Identifier:
1416924

Melton, Emily Denise, Sorokin, Dimitry Y., Overmars, Lex, Lapidus, Alla L., Pillay, Manoj, Ivanova, Natalia, del Rio, Tijana Glavina, Kyrpides, Nikos C., Woyke, Tanja, and Muyzer, Gerard. Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile. United States: N. p., Web. doi:10.1186/s40793-017-0268-9.
Melton, Emily Denise, Sorokin, Dimitry Y., Overmars, Lex, Lapidus, Alla L., Pillay, Manoj, Ivanova, Natalia, del Rio, Tijana Glavina, Kyrpides, Nikos C., Woyke, Tanja, & Muyzer, Gerard. Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile. United States. doi:10.1186/s40793-017-0268-9.
Melton, Emily Denise, Sorokin, Dimitry Y., Overmars, Lex, Lapidus, Alla L., Pillay, Manoj, Ivanova, Natalia, del Rio, Tijana Glavina, Kyrpides, Nikos C., Woyke, Tanja, and Muyzer, Gerard. 2017. "Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile". United States. doi:10.1186/s40793-017-0268-9. https://www.osti.gov/servlets/purl/1416924.
@article{osti_1416924,
title = {Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile},
author = {Melton, Emily Denise and Sorokin, Dimitry Y. and Overmars, Lex and Lapidus, Alla L. and Pillay, Manoj and Ivanova, Natalia and del Rio, Tijana Glavina and Kyrpides, Nikos C. and Woyke, Tanja and Muyzer, Gerard},
abstractNote = {Dethiobacter alkaliphilus strain AHT1 T is an anaerobic, sulfidogenic, moderately salt-tolerant alkaliphilic chemolithotroph isolated from hypersaline soda lake sediments in northeastern Mongolia. It is thus a Gram-positive bacterium with low GC content, within the phylum Firmicutes. We report its draft genome sequence, which consists of 34 contigs with a total sequence length of 3.12 Mbp. D. alkaliphilus strain AHT1 T was sequenced by the Joint Genome Institute (JGI) as part of the Community Science Program due to its relevance to bioremediation and biotechnological applications.},
doi = {10.1186/s40793-017-0268-9},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 12,
place = {United States},
year = {2017},
month = {9}
}

Works referenced in this record:

Biosynthesis of isoprenoids via the non-mevalonate pathway
journal, June 2004
  • Eisenreich, W.; Bacher, A.; Arigoni, D.
  • Cellular and Molecular Life Sciences, Vol. 61, Issue 12, p. 1401-1426
  • DOI: 10.1007/s00018-004-3381-z

WebLogo: A Sequence Logo Generator
journal, May 2004
  • Crooks, Gavin E.; Hon, Gary; Chandonia, John-Marc
  • Genome Research, Vol. 14, Issue 6, p. 1188-1190
  • DOI: 10.1101/gr.849004

Basic local alignment search tool
journal, October 1990
  • Altschul, Stephen F.; Gish, Warren; Miller, Webb
  • Journal of Molecular Biology, Vol. 215, Issue 3, p. 403-410
  • DOI: 10.1016/S0022-2836(05)80360-2